Wall clock time and date at job start Tue Mar 31 2020 03:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47520 * 2 1 4 4 N 1.46497 * 109.47135 * 120.00175 * 2 1 3 5 5 C 1.36945 * 120.00132 * 275.00294 * 4 2 1 6 6 H 1.07999 * 119.99596 * 359.97438 * 5 4 2 7 7 C 1.38804 * 120.00243 * 180.27472 * 5 4 2 8 8 N 1.31618 * 120.00149 * 359.72074 * 7 5 4 9 9 Si 1.86800 * 120.00292 * 179.72313 * 7 5 4 10 10 H 1.48496 * 109.47113 * 89.99545 * 9 7 5 11 11 H 1.48495 * 109.47272 * 210.00160 * 9 7 5 12 12 H 1.48507 * 109.46864 * 329.99928 * 9 7 5 13 13 C 1.53003 * 109.47250 * 239.99815 * 2 1 3 14 14 H 1.08998 * 109.50876 * 64.90493 * 13 2 1 15 15 C 1.53302 * 109.51301 * 184.99995 * 13 2 1 16 16 N 1.47147 * 108.38175 * 172.22750 * 15 13 2 17 17 C 1.34779 * 120.98100 * 129.44684 * 16 15 13 18 18 O 1.21496 * 120.00028 * 353.83226 * 17 16 15 19 19 C 1.48276 * 120.00214 * 173.82773 * 17 16 15 20 20 C 1.47488 * 128.71409 * 173.50559 * 19 17 16 21 21 N 1.30649 * 102.71811 * 179.91237 * 20 19 17 22 22 O 1.20838 * 109.61894 * 0.36853 * 21 20 19 23 23 N 1.20907 * 115.90697 * 359.74055 * 22 21 20 24 24 C 1.47150 * 118.04089 * 309.46403 * 16 15 13 25 25 C 1.53297 * 108.38086 * 50.53542 * 24 16 15 26 26 O 1.42955 * 109.51447 * 304.74901 * 13 2 1 27 27 H 1.08994 * 109.47315 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47226 * 300.00158 * 1 2 3 29 29 H 1.09001 * 109.46876 * 60.00010 * 1 2 3 30 30 H 0.96997 * 120.00534 * 94.99973 * 4 2 1 31 31 H 0.97001 * 120.00372 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.68115 * 291.95421 * 15 13 2 33 33 H 1.09000 * 109.68046 * 52.46604 * 15 13 2 34 34 H 1.08004 * 128.63938 * 0.03669 * 20 19 17 35 35 H 1.08994 * 109.68728 * 170.25831 * 24 16 15 36 36 H 1.09003 * 109.68128 * 290.82134 * 24 16 15 37 37 H 1.09003 * 109.50943 * 67.62733 * 25 24 16 38 38 H 1.09000 * 109.51458 * 187.77290 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1490 -0.0075 2.3758 6 1 1.8925 1.0404 2.4242 7 6 2.6171 -0.6605 3.5077 8 7 2.9301 -1.9375 3.4487 9 14 2.8028 0.2732 5.1150 10 1 1.5387 0.1826 5.8889 11 1 3.9112 -0.3189 5.9062 12 1 3.1061 1.6982 4.8274 13 6 2.0400 -0.7213 -1.2492 14 1 1.7505 -0.1598 -2.1375 15 6 3.5678 -0.8318 -1.1888 16 7 4.0154 -1.6876 -2.2990 17 6 4.9960 -1.2867 -3.1322 18 8 5.4467 -0.1619 -3.0432 19 6 5.5248 -2.2182 -4.1575 20 6 6.4896 -1.9477 -5.2397 21 7 6.5934 -3.1090 -5.8294 22 8 5.8773 -3.9101 -5.2767 23 7 5.2464 -3.4924 -4.3337 24 6 3.3607 -2.9939 -2.4729 25 6 1.8430 -2.7780 -2.4708 26 8 1.4751 -2.0332 -1.3072 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.2490 -1.6318 1.1526 31 1 3.2569 -2.3939 4.2397 32 1 4.0117 0.1589 -1.2868 33 1 3.8665 -1.2755 -0.2390 34 1 6.9879 -1.0209 -5.4828 35 1 3.6674 -3.4349 -3.4213 36 1 3.6384 -3.6558 -1.6527 37 1 1.5527 -2.2248 -3.3640 38 1 1.3378 -3.7438 -2.4597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675615783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:25 Heat of formation + Delta-G solvation = 73.388128 kcal Electronic energy + Delta-G solvation = -24501.832426 eV Core-core repulsion = 20772.436508 eV Total energy + Delta-G solvation = -3729.395919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.22404 -40.44019 -38.51755 -35.76790 -35.11869 -34.80267 -34.44347 -32.32235 -30.30054 -28.42604 -28.32097 -26.05149 -24.39490 -24.09868 -23.53543 -22.40304 -20.18070 -19.71750 -19.35736 -18.42966 -17.75607 -17.28758 -16.46552 -15.93738 -15.69827 -15.15392 -14.97218 -14.73371 -14.32024 -14.11046 -13.43068 -13.40390 -13.17881 -13.02931 -12.71411 -12.28006 -11.93512 -11.75667 -11.54025 -11.32455 -11.26261 -11.04798 -10.85440 -10.82000 -10.65054 -10.47235 -10.24059 -9.97296 -9.92968 -9.61375 -8.95385 -8.55992 -6.96035 -5.76316 -3.05288 0.43773 1.01481 2.30954 2.69351 3.08918 3.16418 3.43960 3.49501 3.50763 3.56351 3.94057 4.26905 4.45453 4.58724 4.76858 5.00197 5.04375 5.11236 5.20924 5.35172 5.49023 5.59849 5.65109 5.73675 5.80059 5.93109 6.14592 6.21027 6.36205 6.42707 6.63266 6.75940 7.05949 7.12254 7.40771 7.69055 7.70446 8.10246 8.41662 9.54061 10.09759 10.46593 11.45854 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.003895 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.560590 B = 7186.742712 C = 7622.211123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.183 3.817 3 H 0.061 0.939 4 N -0.718 5.718 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.011 4.011 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.077 3.923 14 H 0.057 0.943 15 C 0.085 3.915 16 N -0.590 5.590 17 C 0.600 3.400 18 O -0.515 6.515 19 C -0.032 4.032 20 C 0.037 3.963 21 N -0.353 5.353 22 O 0.336 5.664 23 N -0.320 5.320 24 C 0.054 3.946 25 C 0.050 3.950 26 O -0.358 6.358 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.032 0.968 30 H 0.389 0.611 31 H 0.255 0.745 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.228 0.772 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.482 -2.337 -18.694 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.079 0.921 4 N -0.361 5.361 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.207 4.207 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.018 3.982 14 H 0.075 0.925 15 C -0.035 4.035 16 N -0.323 5.323 17 C 0.384 3.616 18 O -0.390 6.390 19 C -0.197 4.197 20 C -0.149 4.149 21 N -0.076 5.076 22 O 0.112 5.888 23 N -0.042 5.042 24 C -0.069 4.069 25 C -0.028 4.028 26 O -0.276 6.276 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.224 0.776 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.244 0.756 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.529 -2.810 -18.663 19.042 hybrid contribution 0.445 1.029 0.984 1.491 sum 2.974 -1.781 -17.679 18.015 Atomic orbital electron populations 1.22323 0.98333 1.01672 0.99637 1.20266 0.92948 0.94622 0.84976 0.92085 1.42422 1.77714 1.10973 1.04984 1.19237 1.36577 0.93903 0.87463 0.91144 1.24714 1.02063 0.95925 0.97975 1.69666 1.50618 1.08666 1.28881 0.86225 0.77257 0.78847 0.84056 1.21782 1.21867 1.20761 1.22943 0.91089 0.84317 0.99838 0.92508 1.22658 0.95533 0.96522 0.88828 1.48098 1.34995 1.19671 1.29512 1.16570 0.80308 0.85103 0.79658 1.90841 1.59411 1.18369 1.70337 1.26346 1.00994 0.91222 1.01110 1.27739 0.97328 0.98587 0.91237 1.75072 1.12011 1.01075 1.19478 1.85101 1.38266 1.35391 1.30040 1.75375 1.13138 1.11936 1.03800 1.23033 0.94371 0.84508 1.04965 1.22895 0.92946 0.97667 0.89299 1.88124 1.70824 1.27029 1.41579 0.92431 0.92730 0.94846 0.77610 0.93552 0.88039 0.87540 0.75589 0.87181 0.89407 0.93329 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.30 37.15 0.35 -2.53 16 2 C 0.18 3.51 2.80 -67.93 -0.19 3.32 16 3 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 4 N -0.72 -17.27 4.24 -53.43 -0.23 -17.50 16 5 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 8 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 9 Si 0.90 22.13 29.55 -169.99 -5.02 17.11 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.08 1.27 2.57 -26.57 -0.07 1.20 16 14 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 15 C 0.09 1.43 5.84 -3.53 -0.02 1.41 16 16 N -0.59 -8.57 3.02 -173.23 -0.52 -9.10 16 17 C 0.60 8.57 7.72 -12.13 -0.09 8.48 16 18 O -0.52 -8.57 16.52 5.37 0.09 -8.48 16 19 C -0.03 -0.36 7.19 -80.07 -0.58 -0.94 16 20 C 0.04 0.33 12.63 -14.29 -0.18 0.15 16 21 N -0.35 -3.38 12.22 30.72 0.38 -3.01 16 22 O 0.34 3.27 11.65 27.26 0.32 3.59 16 23 N -0.32 -3.42 9.06 33.50 0.30 -3.11 16 24 C 0.05 0.67 6.33 -3.53 -0.02 0.65 16 25 C 0.05 0.61 6.98 37.31 0.26 0.87 16 26 O -0.36 -5.88 9.24 -35.23 -0.33 -6.20 16 27 H 0.06 1.09 7.57 -51.93 -0.39 0.70 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.39 10.11 7.08 -40.82 -0.29 9.83 16 31 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.10 1.74 7.06 -51.93 -0.37 1.37 16 33 H 0.11 2.12 6.94 -51.93 -0.36 1.76 16 34 H 0.23 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.11 1.19 4.45 -51.93 -0.23 0.96 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 320.90 15.07 4.84 4.84 Total: -1.00 -30.82 320.90 -4.81 -35.63 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -4.56 Total: 7.49 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -0.79 Total: 5.60 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.65 Total: -59.58 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.82 -4.81 -35.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675615783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.016 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds