Wall clock time and date at job start Tue Mar 31 2020 04:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35473 * 116.99604 * 2 1 4 4 N 1.32426 * 119.11686 * 0.02562 * 3 2 1 5 5 C 1.32130 * 120.97074 * 180.02562 * 4 3 2 6 6 C 1.38799 * 119.22905 * 359.97438 * 5 4 3 7 7 C 1.39473 * 118.38159 * 0.02562 * 6 5 4 8 8 C 1.48464 * 120.51155 * 179.97438 * 7 6 5 9 9 O 1.21476 * 119.99984 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99394 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99630 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47304 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.47082 * 294.99890 * 12 11 10 14 14 C 1.52995 * 109.47443 * 174.99839 * 12 11 10 15 15 O 1.42899 * 109.47156 * 305.00211 * 14 12 11 16 16 N 1.46498 * 109.47009 * 54.99714 * 12 11 10 17 17 C 1.36935 * 120.00239 * 204.99963 * 16 12 11 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 12 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 12 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 N 1.32085 * 119.10956 * 180.29541 * 3 2 1 26 26 H 1.08999 * 109.47453 * 300.00160 * 1 2 3 27 27 H 1.09005 * 109.47147 * 60.00173 * 1 2 3 28 28 H 1.08995 * 109.47065 * 179.97438 * 1 2 3 29 29 H 1.08003 * 120.38364 * 180.02562 * 5 4 3 30 30 H 1.07997 * 120.81495 * 179.97438 * 6 5 4 31 31 H 0.96999 * 120.00577 * 359.97438 * 10 8 7 32 32 H 1.09008 * 109.47336 * 59.99723 * 11 10 8 33 33 H 1.08993 * 109.47303 * 299.99847 * 11 10 8 34 34 H 1.09002 * 109.47180 * 64.99995 * 14 12 11 35 35 H 1.09003 * 109.47292 * 184.99767 * 14 12 11 36 36 H 0.96704 * 113.99871 * 179.97438 * 15 14 12 37 37 H 0.97004 * 119.99747 * 25.00702 * 16 12 11 38 38 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 7 1.3057 2.3064 0.0005 5 6 1.8670 3.5025 0.0000 6 6 3.2515 3.6015 -0.0005 7 6 4.0002 2.4248 -0.0010 8 6 5.4840 2.4755 -0.0022 9 8 6.0551 3.5476 -0.0031 10 7 6.1972 1.3319 -0.0032 11 6 7.6614 1.3818 -0.0038 12 6 8.2203 -0.0424 -0.0043 13 1 7.9491 -0.5395 0.9271 14 6 9.7442 0.0078 -0.1307 15 8 10.1014 0.7605 -1.2916 16 7 7.6607 -0.7861 -1.1356 17 6 7.5788 -2.1520 -1.0838 18 1 7.9263 -2.6811 -0.2086 19 6 7.0490 -2.8568 -2.1559 20 7 6.6205 -2.2117 -3.2202 21 14 6.9365 -4.7201 -2.0849 22 1 6.3323 -5.2279 -3.3428 23 1 8.2974 -5.2923 -1.9232 24 1 6.0906 -5.1213 -0.9322 25 7 3.3639 1.2558 -0.0059 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.2557 4.3929 0.0009 30 1 3.7372 4.5660 -0.0013 31 1 5.7412 0.4758 -0.0029 32 1 8.0074 1.9073 0.8864 33 1 8.0066 1.9083 -0.8935 34 1 10.1668 0.4830 0.7546 35 1 10.1350 -1.0058 -0.2203 36 1 11.0550 0.8342 -1.4346 37 1 7.3484 -0.3110 -1.9215 38 1 6.6786 -1.2442 -3.2570 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755633169.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:00 Heat of formation + Delta-G solvation = -44.003889 kcal Electronic energy + Delta-G solvation = -23769.088878 eV Core-core repulsion = 20034.602460 eV Total energy + Delta-G solvation = -3734.486418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.45509 -39.47684 -38.22381 -37.19779 -35.05947 -34.21450 -33.59631 -31.63398 -31.30730 -28.18908 -27.66298 -26.23052 -24.72422 -23.75642 -23.30451 -20.84033 -20.27359 -18.77402 -18.23078 -17.65592 -16.90992 -16.67530 -16.55446 -15.84828 -15.60525 -15.17643 -14.76712 -14.68536 -14.16806 -14.12052 -13.81373 -13.65210 -13.41471 -13.27398 -13.03096 -12.16457 -11.90059 -11.51900 -11.49228 -11.33954 -10.97481 -10.85858 -10.71591 -10.46078 -10.27429 -9.98201 -9.51013 -9.36146 -9.21390 -9.14345 -8.93666 -8.74398 -7.05530 -6.08023 -3.09340 0.40530 0.85270 2.37898 2.80904 3.20224 3.52449 3.56356 3.73610 3.74321 3.78759 4.37892 4.52591 4.66643 4.80899 4.86969 5.06221 5.07506 5.11680 5.32340 5.41222 5.42627 5.50046 5.59428 5.80262 5.83897 5.95471 5.97103 6.24000 6.40870 6.43275 6.63785 6.73162 6.95883 7.67932 7.78257 7.90311 8.13722 8.31342 8.77691 9.21570 10.08587 10.23105 11.39702 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.011589 B = 0.005199 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.517012 B = 5384.145455 C = 7449.658174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.283 6.283 3 C 0.501 3.499 4 N -0.558 5.558 5 C 0.186 3.814 6 C -0.215 4.215 7 C 0.178 3.822 8 C 0.565 3.435 9 O -0.534 6.534 10 N -0.685 5.685 11 C 0.113 3.887 12 C 0.171 3.829 13 H 0.068 0.932 14 C 0.060 3.940 15 O -0.562 6.562 16 N -0.723 5.723 17 C -0.339 4.339 18 H 0.064 0.936 19 C -0.039 4.039 20 N -0.937 5.937 21 Si 1.079 2.921 22 H -0.285 1.285 23 H -0.297 1.297 24 H -0.295 1.295 25 N -0.493 5.493 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.180 0.820 30 H 0.164 0.836 31 H 0.422 0.578 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.028 0.972 35 H 0.050 0.950 36 H 0.365 0.635 37 H 0.372 0.628 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.793 10.167 9.053 15.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.183 6.183 3 C 0.198 3.802 4 N -0.288 5.288 5 C 0.019 3.981 6 C -0.238 4.238 7 C 0.030 3.970 8 C 0.347 3.653 9 O -0.411 6.411 10 N -0.336 5.336 11 C -0.011 4.011 12 C 0.060 3.940 13 H 0.086 0.914 14 C -0.021 4.021 15 O -0.366 6.366 16 N -0.366 5.366 17 C -0.470 4.470 18 H 0.082 0.918 19 C -0.237 4.237 20 N -0.582 5.582 21 Si 0.910 3.090 22 H -0.211 1.211 23 H -0.224 1.224 24 H -0.222 1.222 25 N -0.221 5.221 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.197 0.803 30 H 0.181 0.819 31 H 0.261 0.739 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.210 0.790 37 H 0.205 0.795 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.833 8.182 8.330 14.641 hybrid contribution 1.062 1.823 0.699 2.222 sum -7.771 10.004 9.029 15.557 Atomic orbital electron populations 1.23019 0.75643 1.03791 1.02637 1.86194 1.23319 1.22111 1.86694 1.20581 0.85681 0.84934 0.88970 1.68006 1.41612 0.99404 1.19790 1.23039 0.92191 0.94446 0.88422 1.22772 0.95535 1.01013 1.04522 1.21582 0.95235 0.87957 0.92274 1.17701 0.84544 0.84841 0.78211 1.90770 1.70161 1.29154 1.51057 1.45959 1.07895 1.09373 1.70361 1.21720 0.78103 0.98787 1.02452 1.20527 0.90148 0.89943 0.93413 0.91400 1.23023 0.98574 0.94592 0.85944 1.86546 1.27157 1.75610 1.47262 1.42346 1.73968 1.04025 1.16261 1.19980 1.40240 0.82978 1.03761 0.91783 1.25729 0.98566 1.06415 0.93002 1.70854 1.48703 1.09152 1.29454 0.83264 0.75730 0.74428 0.75580 1.21098 1.22409 1.22198 1.67523 1.08319 1.29192 1.17072 0.91958 0.91852 0.87673 0.80297 0.81882 0.73890 0.91465 0.90173 0.95353 0.93141 0.79030 0.79454 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.36 101.05 1.05 1.50 16 2 O -0.28 -4.34 10.56 -18.11 -0.19 -4.53 16 3 C 0.50 7.93 8.48 -91.36 -0.77 7.15 16 4 N -0.56 -7.23 9.20 -14.74 -0.14 -7.36 16 5 C 0.19 1.92 11.30 -17.22 -0.19 1.73 16 6 C -0.21 -2.63 9.71 -38.91 -0.38 -3.00 16 7 C 0.18 2.85 6.79 -82.65 -0.56 2.29 16 8 C 0.56 10.03 7.83 -12.05 -0.09 9.94 16 9 O -0.53 -10.14 16.42 5.39 0.09 -10.05 16 10 N -0.68 -12.62 5.38 -61.05 -0.33 -12.95 16 11 C 0.11 2.05 5.12 -4.04 -0.02 2.03 16 12 C 0.17 3.35 2.84 -67.93 -0.19 3.15 16 13 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 14 C 0.06 1.05 6.86 37.16 0.25 1.31 16 15 O -0.56 -10.00 12.64 -35.23 -0.45 -10.44 16 16 N -0.72 -17.73 4.51 -53.43 -0.24 -17.98 16 17 C -0.34 -9.28 9.93 -15.06 -0.15 -9.43 16 18 H 0.06 1.71 7.83 -52.48 -0.41 1.30 16 19 C -0.04 -1.11 5.50 -17.43 -0.10 -1.21 16 20 N -0.94 -29.19 13.70 55.49 0.76 -28.43 16 21 Si 1.08 25.93 29.92 -169.99 -5.09 20.84 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 N -0.49 -8.62 9.73 -11.29 -0.11 -8.73 16 26 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 27 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.18 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.16 1.69 7.73 -52.49 -0.41 1.29 16 31 H 0.42 8.42 7.52 -40.82 -0.31 8.11 16 32 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 33 H 0.08 1.58 7.39 -51.93 -0.38 1.20 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.36 4.66 9.12 45.56 0.42 5.07 16 37 H 0.37 9.88 6.63 -40.82 -0.27 9.61 16 38 H 0.26 8.01 6.77 -40.82 -0.28 7.73 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -35.25 335.97 -5.59 -40.84 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -3.81 Total: 18.28 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: -1.16 Total: 15.45 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -0.05 Total: -75.45 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.55 Total: -25.02 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.09 Total: 20.84 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.25 -5.59 -40.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755633169.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.161 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds