Wall clock time and date at job start Tue Mar 31 2020 04:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46919 * 2 1 4 4 C 1.34517 * 125.78808 * 89.99893 * 3 2 1 5 5 C 1.41382 * 106.84094 * 180.02562 * 4 3 2 6 6 C 1.34519 * 106.83677 * 0.02562 * 5 4 3 7 7 C 1.50706 * 125.78445 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47099 * 339.99941 * 7 6 5 9 9 C 1.53004 * 109.47045 * 100.00132 * 7 6 5 10 10 O 1.42898 * 109.46885 * 54.99638 * 9 7 6 11 11 C 1.42910 * 113.99800 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.46694 * 219.99711 * 7 6 5 13 13 C 1.46902 * 110.99842 * 155.00017 * 12 7 6 14 14 C 1.50696 * 109.47403 * 179.97438 * 13 12 7 15 15 O 1.21297 * 120.00052 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00221 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99975 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00231 * 0.02562 * 17 16 14 19 19 C 1.38959 * 119.99913 * 179.97438 * 17 16 14 20 20 N 1.31409 * 119.99870 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99915 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47204 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47061 * 120.00538 * 21 19 17 24 24 H 1.48504 * 109.46960 * 240.00074 * 21 19 17 25 25 O 1.34295 * 108.42259 * 0.26213 * 6 5 4 26 26 H 1.08999 * 109.47368 * 299.99866 * 1 2 3 27 27 H 1.08996 * 109.47555 * 59.99872 * 1 2 3 28 28 H 1.08997 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46933 * 240.00298 * 2 1 3 30 30 H 1.09003 * 109.46869 * 119.99641 * 2 1 3 31 31 H 1.08000 * 126.57962 * 0.02562 * 4 3 2 32 32 H 1.07994 * 126.58348 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47142 * 174.99889 * 9 7 6 34 34 H 1.09001 * 109.46815 * 295.00119 * 9 7 6 35 35 H 1.09002 * 109.46740 * 59.99775 * 11 10 9 36 36 H 1.08998 * 109.46819 * 179.97438 * 11 10 9 37 37 H 1.08997 * 109.46966 * 300.00085 * 11 10 9 38 38 H 1.00897 * 111.00413 * 31.05425 * 12 7 6 39 39 H 1.09001 * 109.47594 * 300.00356 * 13 12 7 40 40 H 1.09003 * 109.46874 * 60.00112 * 13 12 7 41 41 H 0.96996 * 119.99786 * 0.02562 * 16 14 13 42 42 H 0.96999 * 120.00081 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7396 3.4235 0.6321 6 6 2.7223 3.3771 -0.7122 7 6 3.1173 4.4988 -1.6378 8 1 3.0789 5.4453 -1.0987 9 6 4.5394 4.2608 -2.1497 10 8 4.6178 2.9685 -2.7545 11 6 5.9115 2.6445 -3.2680 12 7 2.1888 4.5450 -2.7752 13 6 2.1369 5.8924 -3.3580 14 6 1.1770 5.9007 -4.5197 15 8 0.5930 4.8842 -4.8312 16 7 0.9673 7.0376 -5.2126 17 6 0.0936 7.0452 -6.2690 18 1 -0.4270 6.1403 -6.5458 19 6 -0.1230 8.2175 -6.9831 20 7 0.5100 9.3186 -6.6459 21 14 -1.3140 8.2280 -8.4221 22 1 -1.8925 6.8714 -8.5958 23 1 -2.4036 9.2010 -8.1557 24 1 -0.5920 8.6198 -9.6592 25 8 2.2872 2.1638 -1.0894 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 2.1858 1.8540 2.1204 32 1 3.0366 4.2628 1.2433 33 1 4.7926 5.0228 -2.8867 34 1 5.2394 4.3148 -1.3160 35 1 6.6397 2.6650 -2.4571 36 1 5.8880 1.6484 -3.7098 37 1 6.1935 3.3730 -4.0281 38 1 1.2685 4.2329 -2.5037 39 1 1.8000 6.6024 -2.6027 40 1 3.1302 6.1763 -3.7060 41 1 1.4345 7.8503 -4.9637 42 1 0.3591 10.1368 -7.1446 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184803817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:07 Heat of formation + Delta-G solvation = -67.162339 kcal Electronic energy + Delta-G solvation = -23865.802278 eV Core-core repulsion = 20233.851977 eV Total energy + Delta-G solvation = -3631.950301 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.50444 -38.50840 -37.75038 -35.63234 -34.15445 -33.82587 -32.73165 -31.23141 -30.37316 -27.84568 -26.66077 -25.73854 -24.30734 -23.59874 -21.71260 -21.32321 -19.84138 -19.26121 -17.91148 -17.18303 -16.42965 -16.26220 -15.62572 -15.58417 -15.15814 -14.72978 -14.58640 -14.41152 -14.26033 -14.06286 -13.49807 -13.17127 -13.14173 -12.81171 -12.65188 -12.38671 -12.38172 -11.83151 -11.70148 -11.65466 -11.54452 -11.45893 -11.13366 -11.04974 -10.97844 -10.32266 -10.20189 -9.77971 -9.52383 -9.49332 -8.44235 -8.24067 -8.06356 -7.93467 -6.39690 -3.80084 1.80598 2.63263 2.96774 3.18167 3.28583 3.36335 3.82251 3.93505 4.09355 4.30741 4.50040 4.79893 4.97980 5.03355 5.06082 5.12845 5.17042 5.25523 5.29045 5.35334 5.37379 5.45018 5.46312 5.58730 5.64741 5.70974 5.73803 5.75407 5.86356 5.94427 6.00852 6.04158 6.19281 6.27635 6.56631 7.08425 7.27397 7.40882 7.57854 7.64413 8.09026 8.63980 9.20621 9.56651 10.08565 10.78270 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.017567 B = 0.003314 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.490757 B = 8445.870687 C = 9183.189543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.042 4.042 3 C -0.011 4.011 4 C -0.216 4.216 5 C -0.215 4.215 6 C 0.006 3.994 7 C 0.168 3.832 8 H 0.086 0.914 9 C 0.073 3.927 10 O -0.363 6.363 11 C 0.032 3.968 12 N -0.650 5.650 13 C 0.047 3.953 14 C 0.443 3.557 15 O -0.578 6.578 16 N -0.565 5.565 17 C -0.297 4.297 18 H 0.104 0.896 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 O -0.140 6.140 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.033 0.967 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.357 0.643 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.458 -11.114 15.708 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.080 4.080 3 C -0.062 4.062 4 C -0.235 4.235 5 C -0.235 4.235 6 C -0.046 4.046 7 C 0.058 3.942 8 H 0.103 0.897 9 C -0.005 4.005 10 O -0.280 6.280 11 C -0.065 4.065 12 N -0.284 5.284 13 C -0.085 4.085 14 C 0.228 3.772 15 O -0.462 6.462 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 O -0.034 6.034 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.177 0.823 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.225 0.775 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.296 -12.070 14.626 20.698 hybrid contribution -0.348 1.483 0.333 1.560 sum 7.948 -10.586 14.959 19.975 Atomic orbital electron populations 1.21794 0.93973 1.02171 1.02887 1.20051 0.96374 0.87728 1.03809 1.22480 1.04032 0.95226 0.84507 1.21430 1.08461 0.94530 0.99087 1.21490 1.08854 0.99604 0.93555 1.22100 1.03108 0.85975 0.93371 1.20231 0.93208 0.91970 0.88786 0.89680 1.22578 0.94877 0.86589 0.96407 1.88082 1.29834 1.33009 1.77120 1.22702 0.85253 1.01194 0.97381 1.60074 1.14637 1.24262 1.29456 1.21799 1.00602 0.89431 0.96709 1.19721 0.86529 0.84766 0.86162 1.90546 1.52505 1.32841 1.70261 1.41851 1.39914 1.09827 1.28599 1.19762 1.19160 0.97424 1.06328 0.87866 1.25254 0.98497 0.94834 0.99408 1.69618 1.42770 1.00597 1.41465 0.85803 0.79650 0.78507 0.80416 1.19200 1.20793 1.20767 1.84115 1.63662 1.21695 1.33962 0.92348 0.91852 0.91804 0.90006 0.89275 0.83954 0.83808 0.92293 0.93272 0.94855 0.89910 0.94178 0.82251 0.93642 0.89533 0.77503 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 37.16 0.37 -1.01 16 2 C -0.04 -0.41 6.47 -27.88 -0.18 -0.59 16 3 C -0.01 -0.15 6.58 -35.62 -0.23 -0.38 16 4 C -0.22 -2.60 10.81 -39.70 -0.43 -3.03 16 5 C -0.22 -2.70 10.80 -39.70 -0.43 -3.13 16 6 C 0.01 0.09 5.36 -35.62 -0.19 -0.10 16 7 C 0.17 2.34 2.87 -68.86 -0.20 2.14 16 8 H 0.09 0.97 7.79 -51.93 -0.40 0.57 16 9 C 0.07 0.96 5.69 37.16 0.21 1.17 16 10 O -0.36 -5.61 10.03 -35.23 -0.35 -5.96 16 11 C 0.03 0.37 11.01 101.05 1.11 1.48 16 12 N -0.65 -11.47 5.87 -109.22 -0.64 -12.11 16 13 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 14 C 0.44 10.70 7.82 -10.99 -0.09 10.61 16 15 O -0.58 -16.25 15.78 5.54 0.09 -16.16 16 16 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 17 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 18 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 21 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 O -0.14 -2.25 10.53 5.74 0.06 -2.19 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.06 0.75 7.35 -51.93 -0.38 0.36 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.36 6.77 8.05 -39.29 -0.32 6.45 16 39 H 0.05 0.71 8.06 -51.93 -0.42 0.29 16 40 H 0.09 1.41 7.36 -51.93 -0.38 1.02 16 41 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -33.79 361.22 -6.47 -40.26 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -6.39 Total: 13.05 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -0.33 Total: -0.08 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.03 Total: -50.63 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.21 Total: -24.31 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.79 -6.47 -40.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184803817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.900 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds