Wall clock time and date at job start Tue Mar 31 2020 03:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99697 * 2 1 4 4 H 1.48497 * 109.46862 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47150 * 300.00184 * 3 2 1 6 6 H 1.48499 * 109.47007 * 60.00220 * 3 2 1 7 7 C 1.37874 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00154 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00006 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47200 * 180.02562 * 9 7 2 11 11 C 1.34767 * 120.00183 * 180.02562 * 10 9 7 12 12 O 1.21289 * 120.00232 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00171 * 180.02562 * 11 10 9 14 14 N 1.46903 * 109.46969 * 179.97438 * 13 11 10 15 15 C 1.50098 * 110.99989 * 285.72914 * 14 13 11 16 16 C 1.50926 * 102.23478 * 213.15269 * 15 14 13 17 17 H 1.09000 * 109.47371 * 290.45093 * 16 15 14 18 18 C 1.50308 * 125.69349 * 155.98799 * 16 15 14 19 19 C 1.55937 * 104.16210 * 214.80395 * 18 16 15 20 20 C 1.56404 * 105.79433 * 7.51601 * 19 18 16 21 21 C 1.51018 * 101.59800 * 25.00452 * 20 19 18 22 22 H 1.08997 * 109.71419 * 69.28070 * 21 20 19 23 23 C 1.49626 * 110.99579 * 165.91653 * 14 13 11 24 24 H 1.08997 * 110.46035 * 233.53983 * 23 14 13 25 25 C 1.50703 * 110.36802 * 355.82489 * 23 14 13 26 26 O 1.20820 * 120.00352 * 49.82698 * 25 23 14 27 27 O 1.34231 * 119.99603 * 229.82268 * 25 23 14 28 28 H 0.97003 * 120.00170 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47154 * 60.00155 * 9 7 2 30 30 H 1.08998 * 109.47521 * 300.00510 * 9 7 2 31 31 H 0.97001 * 119.99655 * 359.97438 * 10 9 7 32 32 H 1.09001 * 109.46957 * 60.00129 * 13 11 10 33 33 H 1.08992 * 109.47133 * 299.99838 * 13 11 10 34 34 H 1.09004 * 110.85235 * 94.96902 * 15 14 13 35 35 H 1.09001 * 110.85849 * 331.34093 * 15 14 13 36 36 H 1.08996 * 110.49088 * 333.47215 * 18 16 15 37 37 H 1.08998 * 110.49341 * 95.99846 * 18 16 15 38 38 H 1.08993 * 110.18734 * 126.59647 * 19 18 16 39 39 H 1.08994 * 110.18478 * 248.36292 * 19 18 16 40 40 H 1.09002 * 110.99986 * 266.92737 * 20 19 18 41 41 H 1.08995 * 110.99783 * 143.08693 * 20 19 18 42 42 H 0.96696 * 117.00146 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5615 -5.1050 -0.0011 13 6 2.7332 -6.0287 -0.0005 14 7 1.9987 -7.3009 -0.0006 15 6 1.4002 -7.5766 1.3480 16 6 1.4725 -9.0820 1.4284 17 1 0.7669 -9.5180 0.7212 18 6 1.4986 -9.8924 2.6940 19 6 2.4250 -11.1000 2.3548 20 6 3.0311 -10.7893 0.9468 21 6 2.9491 -9.2819 0.9070 22 1 3.6567 -8.8562 1.6185 23 6 2.9041 -8.4428 -0.3400 24 1 2.4960 -9.0189 -1.1703 25 6 4.2818 -7.9362 -0.6812 26 8 4.8399 -7.1593 0.0569 27 8 4.8889 -8.3481 -1.8053 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 3.1568 -3.4354 -0.0009 32 1 3.3592 -5.9711 0.8900 33 1 3.3605 -5.9709 -0.8899 34 1 0.3659 -7.2351 1.3907 35 1 1.9945 -7.1169 2.1377 36 1 1.9181 -9.3079 3.5128 37 1 0.4960 -10.2372 2.9471 38 1 3.2196 -11.1844 3.0960 39 1 1.8440 -12.0216 2.3203 40 1 2.4283 -11.2344 0.1552 41 1 4.0658 -11.1261 0.8841 42 1 5.7718 -7.9955 -1.9819 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299990189.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:43 Heat of formation + Delta-G solvation = -131.255312 kcal Electronic energy + Delta-G solvation = -24555.423841 eV Core-core repulsion = 20920.694260 eV Total energy + Delta-G solvation = -3634.729581 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.61421 -40.52704 -40.21311 -37.41935 -36.49440 -35.99441 -34.36790 -31.95006 -31.50937 -29.39189 -28.03363 -26.83342 -24.67111 -24.18830 -22.17771 -21.51367 -21.16901 -20.56244 -19.55780 -18.99915 -18.01130 -17.65261 -17.09056 -16.99406 -16.42512 -16.28000 -15.96527 -15.92135 -15.54727 -15.01422 -14.70251 -14.47913 -14.33101 -14.01190 -13.99702 -13.60449 -13.12513 -12.92707 -12.82090 -12.78917 -12.69464 -12.52146 -12.24484 -12.13471 -12.07626 -11.77646 -11.69125 -11.47976 -11.27614 -11.08531 -10.83351 -10.75819 -9.86563 -9.58930 -8.31168 -6.47981 0.92310 1.41281 1.42694 1.56284 1.70861 1.90905 2.16625 2.38855 2.78182 2.94453 3.03347 3.64006 3.71301 3.86401 3.97240 4.02587 4.14105 4.18398 4.28575 4.31529 4.37575 4.51696 4.64809 4.68270 4.71584 4.85874 4.99154 5.06625 5.08589 5.18361 5.21445 5.22343 5.35717 5.45896 5.46668 5.49541 5.52079 5.55790 5.69471 5.82540 6.62378 6.86547 6.87789 7.20896 7.44631 8.81276 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.024407 B = 0.003340 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.957083 B = 8380.396272 C = 9090.605340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.269 3.731 10 N -0.711 5.711 11 C 0.496 3.504 12 O -0.578 6.578 13 C 0.043 3.957 14 N -0.496 5.496 15 C 0.057 3.943 16 C -0.103 4.103 17 H 0.093 0.907 18 C -0.106 4.106 19 C -0.115 4.115 20 C -0.098 4.098 21 C -0.121 4.121 22 H 0.072 0.928 23 C 0.091 3.909 24 H 0.138 0.862 25 C 0.478 3.522 26 O -0.537 6.537 27 O -0.503 6.503 28 H 0.269 0.731 29 H -0.012 1.012 30 H -0.012 1.012 31 H 0.405 0.595 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.205 -24.558 1.517 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.179 1.179 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.595 4.595 8 H 0.099 0.901 9 C 0.147 3.853 10 N -0.361 5.361 11 C 0.282 3.718 12 O -0.458 6.458 13 C -0.088 4.088 14 N -0.222 5.222 15 C -0.070 4.070 16 C -0.122 4.122 17 H 0.111 0.889 18 C -0.144 4.144 19 C -0.152 4.152 20 C -0.136 4.136 21 C -0.141 4.141 22 H 0.090 0.910 23 C -0.017 4.017 24 H 0.156 0.844 25 C 0.320 3.680 26 O -0.427 6.427 27 O -0.316 6.316 28 H 0.078 0.922 29 H 0.006 0.994 30 H 0.006 0.994 31 H 0.240 0.760 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 9.591 -24.478 1.381 26.326 hybrid contribution 1.505 1.747 0.390 2.339 sum 11.096 -22.730 1.771 25.356 Atomic orbital electron populations 1.70143 1.08219 1.28556 1.49876 1.26071 0.95822 1.03884 0.93774 0.85093 0.78962 0.77231 0.77817 1.17858 1.20251 1.20269 1.21631 0.94211 0.90649 1.53028 0.90107 1.18540 0.88565 0.84113 0.94127 1.46207 1.11120 1.05576 1.73237 1.21201 0.89834 0.84666 0.76120 1.90620 1.18649 1.85273 1.51227 1.22408 0.93517 0.88443 1.04445 1.65381 1.27576 0.99480 1.29752 1.22452 1.00148 0.96600 0.87796 1.22123 0.96489 0.93249 1.00369 0.88912 1.21533 1.01232 0.96280 0.95373 1.22924 0.98554 0.97893 0.95864 1.21835 1.02240 0.90855 0.98626 1.22428 0.98961 0.98301 0.94394 0.90972 1.21757 0.85464 0.93299 1.01138 0.84416 1.23817 0.88614 0.77384 0.78176 1.90758 1.66684 1.34126 1.51149 1.84515 1.37887 1.68227 1.40965 0.92167 0.99365 0.99368 0.76021 0.89284 0.87880 0.90716 0.93550 0.91907 0.90133 0.90964 0.89678 0.89422 0.90377 0.70858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.99 43.29 29.54 68.60 2.03 45.32 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.56 -31.42 9.28 25.60 0.24 -31.18 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.27 15.41 5.43 85.63 0.46 15.88 16 10 N -0.71 -32.57 5.55 -466.78 -2.59 -35.16 16 11 C 0.50 21.68 7.68 87.66 0.67 22.35 16 12 O -0.58 -29.95 15.49 -3.06 -0.05 -29.99 16 13 C 0.04 1.42 3.89 85.56 0.33 1.75 16 14 N -0.50 -14.57 4.89 -872.82 -4.27 -18.84 16 15 C 0.06 1.58 5.77 85.00 0.49 2.07 16 16 C -0.10 -1.97 2.81 -10.61 -0.03 -2.00 16 17 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 18 C -0.11 -1.53 6.69 30.74 0.21 -1.33 16 19 C -0.11 -1.20 6.95 32.80 0.23 -0.97 16 20 C -0.10 -1.10 6.72 31.13 0.21 -0.89 16 21 C -0.12 -2.11 2.18 -10.56 -0.02 -2.13 16 22 H 0.07 1.48 7.78 -2.39 -0.02 1.46 16 23 C 0.09 1.93 3.71 42.79 0.16 2.09 16 24 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 25 C 0.48 10.10 5.79 71.24 0.41 10.51 16 26 O -0.54 -14.14 14.12 21.98 0.31 -13.83 16 27 O -0.50 -7.55 13.42 -51.43 -0.69 -8.24 16 28 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 29 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 30 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 31 H 0.40 15.93 8.32 -92.71 -0.77 15.16 16 32 H 0.09 2.87 6.46 -2.39 -0.02 2.86 16 33 H 0.10 3.14 6.17 -2.39 -0.01 3.13 16 34 H 0.07 2.48 7.71 -2.38 -0.02 2.46 16 35 H 0.05 1.33 7.63 -2.39 -0.02 1.31 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.43 2.87 9.10 -74.06 -0.67 2.20 16 Total: -1.00 -76.42 340.46 -1.55 -77.96 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -0.40 Total: 22.69 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 3.82 Total: 16.84 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -6.57 Total: -110.75 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -0.43 Total: -52.06 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -76.42 -1.55 -77.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299990189.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.290 kcal (2) G-P(sol) polarization free energy of solvation -76.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds