Wall clock time and date at job start Tue Mar 31 2020 04:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 110.21618 * 2 1 4 4 C 1.53006 * 109.47127 * 300.70021 * 3 2 1 5 5 C 1.50698 * 109.47184 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00025 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00035 * 179.97438 * 5 4 3 8 8 C 1.47064 * 136.05362 * 359.63552 * 7 5 4 9 9 C 1.53240 * 88.07929 * 207.19885 * 8 7 5 10 10 O 1.42901 * 114.01649 * 87.72031 * 9 8 7 11 11 C 1.50700 * 114.32648 * 220.46810 * 9 8 7 12 12 H 1.08006 * 119.99698 * 93.76673 * 11 9 8 13 13 C 1.37872 * 120.00471 * 273.76103 * 11 9 8 14 14 N 1.31516 * 119.99810 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00268 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46797 * 60.00510 * 15 13 11 17 17 H 1.48501 * 109.47133 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47181 * 300.00050 * 15 13 11 19 19 C 1.47062 * 136.05806 * 180.02562 * 7 5 4 20 20 C 1.54478 * 110.24738 * 121.93158 * 2 1 3 21 21 C 1.54630 * 101.76768 * 93.66885 * 20 2 1 22 22 C 1.51279 * 104.19205 * 24.79857 * 21 20 2 23 23 O 1.21284 * 124.94022 * 163.77824 * 22 21 20 24 24 N 1.34563 * 110.14519 * 343.67196 * 22 21 20 25 25 H 1.08997 * 109.47421 * 60.00024 * 1 2 3 26 26 H 1.09000 * 109.47389 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46931 * 299.99761 * 1 2 3 28 28 H 1.09001 * 109.46832 * 180.70342 * 3 2 1 29 29 H 1.08993 * 109.47194 * 60.69863 * 3 2 1 30 30 H 1.09001 * 109.46801 * 300.00272 * 4 3 2 31 31 H 1.09001 * 109.46998 * 59.99868 * 4 3 2 32 32 H 1.08997 * 113.47187 * 321.93034 * 8 7 5 33 33 H 1.08997 * 113.46740 * 92.37708 * 8 7 5 34 34 H 0.96700 * 114.00144 * 86.38586 * 10 9 8 35 35 H 0.96999 * 119.99929 * 179.97438 * 14 13 11 36 36 H 1.09000 * 113.47354 * 267.62944 * 19 7 5 37 37 H 1.09005 * 113.46474 * 38.06897 * 19 7 5 38 38 H 1.08999 * 110.97088 * 211.78704 * 20 2 1 39 39 H 1.09006 * 110.97042 * 335.51351 * 20 2 1 40 40 H 1.08997 * 110.48664 * 143.47639 * 21 20 2 41 41 H 1.09002 * 110.48775 * 265.98982 * 21 20 2 42 42 H 0.96998 * 124.43752 * 179.64228 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4357 0.0000 4 6 1.5438 2.1688 -1.2404 5 6 2.0641 3.5832 -1.2401 6 8 2.7769 3.9669 -0.3370 7 7 1.7381 4.4213 -2.2439 8 6 0.9378 4.3383 -3.4750 9 6 1.8275 5.4371 -4.0660 10 8 3.0042 4.9477 -4.7126 11 6 1.0849 6.4689 -4.8753 12 1 0.7477 7.3820 -4.4072 13 6 0.8359 6.2474 -6.2131 14 7 1.2461 5.1354 -6.7830 15 14 -0.0853 7.5261 -7.2160 16 1 0.6681 8.8057 -7.1984 17 1 -0.2233 7.0515 -8.6164 18 1 -1.4335 7.7372 -6.6304 19 6 2.0316 5.8192 -2.5937 20 6 2.0646 -0.7666 1.2300 21 6 2.2646 -2.1874 0.6536 22 6 2.4538 -1.9625 -0.8303 23 8 2.9119 -2.7769 -1.6035 24 7 2.0378 -0.7283 -1.1687 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.1486 1.4215 -0.0126 29 1 1.7123 1.9504 0.8961 30 1 1.8902 1.6540 -2.1366 31 1 0.4540 2.1829 -1.2278 32 1 1.0314 3.3822 -3.9899 33 1 -0.0993 4.6453 -3.3400 34 1 2.8725 4.7078 -5.6401 35 1 1.0706 4.9794 -7.7241 36 1 1.2891 6.5251 -2.2215 37 1 3.0533 6.1196 -2.3610 38 1 3.0113 -0.3468 1.5701 39 1 1.3306 -0.7717 2.0358 40 1 3.1509 -2.6528 1.0850 41 1 1.3836 -2.8019 0.8391 42 1 2.0701 -0.3659 -2.0678 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356576283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:11 Heat of formation + Delta-G solvation = -93.832888 kcal Electronic energy + Delta-G solvation = -24269.466722 eV Core-core repulsion = 20636.359899 eV Total energy + Delta-G solvation = -3633.106822 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.84905 -39.62143 -37.82323 -37.08396 -34.05270 -33.08891 -32.24072 -31.55730 -29.84266 -28.50519 -26.31292 -25.24139 -25.11519 -23.13092 -20.98176 -20.47968 -19.83049 -18.24777 -17.55171 -17.09413 -16.34543 -16.17526 -15.57882 -15.43720 -15.01790 -14.90357 -14.27100 -14.21836 -13.96104 -13.76518 -13.26513 -13.10585 -12.90822 -12.76205 -12.41395 -12.38812 -12.32534 -11.92141 -11.70893 -11.60147 -11.23077 -11.10414 -11.08357 -10.98623 -10.78303 -10.53943 -10.31347 -9.99124 -9.68224 -9.28739 -9.22421 -8.82296 -8.45325 -7.90721 -6.45036 -4.55778 2.47754 3.11361 3.12618 3.19104 3.20815 3.21437 3.47854 4.05735 4.13867 4.19917 4.43790 4.69292 4.72650 4.78775 4.98506 5.09685 5.13936 5.27641 5.29526 5.42862 5.49589 5.57559 5.59260 5.63924 5.68747 5.84445 5.89480 6.01070 6.12014 6.18015 6.35593 6.44690 6.57460 6.63343 6.69281 6.92297 7.05479 7.58048 7.75275 8.13340 8.45148 8.49123 8.69833 9.15924 9.43869 10.61608 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.003274 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.161354 B = 8550.646358 C = 9059.344245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.154 3.846 3 C -0.103 4.103 4 C -0.136 4.136 5 C 0.534 3.466 6 O -0.566 6.566 7 N -0.635 5.635 8 C 0.071 3.929 9 C 0.240 3.760 10 O -0.572 6.572 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.898 5.898 15 Si 0.909 3.091 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.106 3.894 20 C -0.123 4.123 21 C -0.156 4.156 22 C 0.519 3.481 23 O -0.540 6.540 24 N -0.721 5.721 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.394 0.606 35 H 0.275 0.725 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 -9.626 12.323 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 C -0.141 4.141 4 C -0.175 4.175 5 C 0.323 3.677 6 O -0.447 6.447 7 N -0.368 5.368 8 C -0.052 4.052 9 C 0.198 3.802 10 O -0.385 6.385 11 C -0.574 4.574 12 H 0.090 0.910 13 C -0.130 4.130 14 N -0.539 5.539 15 Si 0.736 3.264 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.017 4.017 20 C -0.161 4.161 21 C -0.196 4.196 22 C 0.305 3.695 23 O -0.417 6.417 24 N -0.377 5.377 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.250 0.750 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.329 -10.055 13.060 16.815 hybrid contribution -0.921 0.687 -1.613 1.980 sum -4.250 -9.368 11.448 15.390 Atomic orbital electron populations 1.22258 0.93708 1.02568 1.03317 1.21126 0.94278 0.92413 0.85441 1.21661 1.02061 0.91957 0.98426 1.21624 1.02392 0.93473 1.00060 1.19987 0.80818 0.86797 0.80048 1.90637 1.39565 1.78221 1.36264 1.49743 1.50125 1.14021 1.22894 1.24173 0.96860 1.02383 0.81775 1.19481 0.83271 0.89645 0.87812 1.86050 1.34290 1.86193 1.31976 1.21396 1.36324 1.04803 0.94832 0.90976 1.25078 0.94726 0.95578 0.97628 1.69250 1.46598 1.24684 1.13326 0.86359 0.80054 0.81237 0.78713 1.19802 1.20957 1.19861 1.23319 1.00702 0.82545 0.95096 1.22705 1.03009 0.93676 0.96690 1.22346 1.04970 0.98770 0.93508 1.20918 0.76095 0.81513 0.90960 1.90759 1.45566 1.47732 1.57641 1.46518 1.63869 1.15738 1.11525 0.91437 0.92116 0.90872 0.90297 0.89539 0.89560 0.88919 0.91796 0.90068 0.74953 0.91469 0.89736 0.91611 0.89502 0.88955 0.88124 0.87920 0.74982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 8.41 37.16 0.31 -0.88 16 2 C 0.15 1.35 0.87 -130.90 -0.11 1.23 16 3 C -0.10 -1.14 3.70 -26.73 -0.10 -1.24 16 4 C -0.14 -1.80 5.03 -27.88 -0.14 -1.94 16 5 C 0.53 10.01 8.08 -10.99 -0.09 9.92 16 6 O -0.57 -12.19 16.76 5.56 0.09 -12.10 16 7 N -0.63 -12.78 3.69 -185.40 -0.68 -13.46 16 8 C 0.07 1.45 7.82 -8.64 -0.07 1.38 16 9 C 0.24 5.60 1.57 -91.40 -0.14 5.46 16 10 O -0.57 -14.54 13.53 -35.23 -0.48 -15.02 16 11 C -0.54 -13.06 8.69 -34.44 -0.30 -13.36 16 12 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 13 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16 14 N -0.90 -22.26 11.01 55.43 0.61 -21.65 16 15 Si 0.91 18.98 29.54 -169.99 -5.02 13.96 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 C 0.11 2.25 8.03 -8.52 -0.07 2.18 16 20 C -0.12 -0.85 6.21 -25.10 -0.16 -1.00 16 21 C -0.16 -1.23 6.86 -26.74 -0.18 -1.41 16 22 C 0.52 6.31 8.43 -10.80 -0.09 6.21 16 23 O -0.54 -8.99 18.03 5.55 0.10 -8.89 16 24 N -0.72 -7.70 5.40 -46.58 -0.25 -7.95 16 25 H 0.07 0.55 6.49 -51.93 -0.34 0.21 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 29 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 30 H 0.09 1.13 6.89 -51.93 -0.36 0.77 16 31 H 0.09 1.07 6.48 -51.93 -0.34 0.73 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 34 H 0.39 10.12 6.33 45.56 0.29 10.41 16 35 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 36 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.09 0.60 7.91 -51.93 -0.41 0.19 16 39 H 0.09 0.45 7.89 -51.93 -0.41 0.04 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.41 4.53 7.68 -40.82 -0.31 4.21 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -30.53 345.44 -7.30 -37.83 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -5.64 Total: 13.87 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -1.24 Total: 8.21 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.33 Total: -43.06 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.28 Total: -36.01 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.53 -7.30 -37.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356576283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.004 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds