Wall clock time and date at job start Tue Mar 31 2020 04:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 110.21618 * 2 1 4 4 C 1.53006 * 109.47127 * 300.70021 * 3 2 1 5 5 C 1.50698 * 109.47184 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00025 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00035 * 179.97438 * 5 4 3 8 8 C 1.47064 * 136.05362 * 359.63552 * 7 5 4 9 9 C 1.53240 * 88.07929 * 207.19885 * 8 7 5 10 10 O 1.42901 * 114.01649 * 87.72031 * 9 8 7 11 11 C 1.50700 * 114.32648 * 220.46810 * 9 8 7 12 12 H 1.08006 * 119.99698 * 93.76673 * 11 9 8 13 13 C 1.37872 * 120.00471 * 273.76103 * 11 9 8 14 14 N 1.31516 * 119.99810 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00268 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46797 * 60.00510 * 15 13 11 17 17 H 1.48501 * 109.47133 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47181 * 300.00050 * 15 13 11 19 19 C 1.47062 * 136.05806 * 180.02562 * 7 5 4 20 20 C 1.54478 * 110.24738 * 121.93158 * 2 1 3 21 21 C 1.54630 * 101.76768 * 93.66885 * 20 2 1 22 22 C 1.51279 * 104.19205 * 24.79857 * 21 20 2 23 23 O 1.21284 * 124.94022 * 163.77824 * 22 21 20 24 24 N 1.34563 * 110.14519 * 343.67196 * 22 21 20 25 25 H 1.08997 * 109.47421 * 60.00024 * 1 2 3 26 26 H 1.09000 * 109.47389 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46931 * 299.99761 * 1 2 3 28 28 H 1.09001 * 109.46832 * 180.70342 * 3 2 1 29 29 H 1.08993 * 109.47194 * 60.69863 * 3 2 1 30 30 H 1.09001 * 109.46801 * 300.00272 * 4 3 2 31 31 H 1.09001 * 109.46998 * 59.99868 * 4 3 2 32 32 H 1.08997 * 113.47187 * 321.93034 * 8 7 5 33 33 H 1.08997 * 113.46740 * 92.37708 * 8 7 5 34 34 H 0.96700 * 114.00144 * 86.38586 * 10 9 8 35 35 H 0.96999 * 119.99929 * 179.97438 * 14 13 11 36 36 H 1.09000 * 113.47354 * 267.62944 * 19 7 5 37 37 H 1.09005 * 113.46474 * 38.06897 * 19 7 5 38 38 H 1.08999 * 110.97088 * 211.78704 * 20 2 1 39 39 H 1.09006 * 110.97042 * 335.51351 * 20 2 1 40 40 H 1.08997 * 110.48664 * 143.47639 * 21 20 2 41 41 H 1.09002 * 110.48775 * 265.98982 * 21 20 2 42 42 H 0.96998 * 124.43752 * 179.64228 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4357 0.0000 4 6 1.5438 2.1688 -1.2404 5 6 2.0641 3.5832 -1.2401 6 8 2.7769 3.9669 -0.3370 7 7 1.7381 4.4213 -2.2439 8 6 0.9378 4.3383 -3.4750 9 6 1.8275 5.4371 -4.0660 10 8 3.0042 4.9477 -4.7126 11 6 1.0849 6.4689 -4.8753 12 1 0.7477 7.3820 -4.4072 13 6 0.8359 6.2474 -6.2131 14 7 1.2461 5.1354 -6.7830 15 14 -0.0853 7.5261 -7.2160 16 1 0.6681 8.8057 -7.1984 17 1 -0.2233 7.0515 -8.6164 18 1 -1.4335 7.7372 -6.6304 19 6 2.0316 5.8192 -2.5937 20 6 2.0646 -0.7666 1.2300 21 6 2.2646 -2.1874 0.6536 22 6 2.4538 -1.9625 -0.8303 23 8 2.9119 -2.7769 -1.6035 24 7 2.0378 -0.7283 -1.1687 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.1486 1.4215 -0.0126 29 1 1.7123 1.9504 0.8961 30 1 1.8902 1.6540 -2.1366 31 1 0.4540 2.1829 -1.2278 32 1 1.0314 3.3822 -3.9899 33 1 -0.0993 4.6453 -3.3400 34 1 2.8725 4.7078 -5.6401 35 1 1.0706 4.9794 -7.7241 36 1 1.2891 6.5251 -2.2215 37 1 3.0533 6.1196 -2.3610 38 1 3.0113 -0.3468 1.5701 39 1 1.3306 -0.7717 2.0358 40 1 3.1509 -2.6528 1.0850 41 1 1.3836 -2.8019 0.8391 42 1 2.0701 -0.3659 -2.0678 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356576283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:07 Heat of formation + Delta-G solvation = -117.109432 kcal Electronic energy + Delta-G solvation = -24270.476069 eV Core-core repulsion = 20636.359899 eV Total energy + Delta-G solvation = -3634.116169 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.73684 -41.18158 -39.29729 -38.22061 -35.89189 -34.14080 -34.10159 -32.28941 -31.04855 -29.77407 -27.55997 -26.86629 -26.41762 -24.11848 -21.94523 -21.75345 -20.87860 -19.85427 -19.25191 -18.26930 -17.57489 -17.22833 -17.10056 -16.75793 -16.58791 -15.97114 -15.90943 -15.34269 -15.04839 -14.91035 -14.50077 -14.46158 -14.03747 -13.82353 -13.60523 -13.43428 -13.41040 -13.23099 -13.07668 -12.79595 -12.76704 -12.55325 -12.23402 -12.17966 -12.02921 -11.79209 -11.56632 -11.38825 -10.95143 -10.91834 -10.64085 -10.24124 -10.15214 -9.58177 -8.28329 -6.45619 1.48086 1.50433 1.56826 1.57512 1.64071 1.97669 2.38749 2.40436 2.93899 3.31939 3.38265 3.59034 3.75951 3.82773 4.00219 4.10159 4.13506 4.21302 4.30922 4.43874 4.49663 4.57276 4.63041 4.75717 4.80520 4.90182 4.91882 4.93434 4.94500 4.98979 5.14293 5.14978 5.20128 5.23990 5.42094 5.71795 5.85793 5.90200 6.05987 6.60214 6.90602 7.14756 7.22149 7.28882 7.47247 8.77402 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.003274 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.161354 B = 8550.646358 C = 9059.344245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.157 3.843 3 C -0.095 4.095 4 C -0.126 4.126 5 C 0.525 3.475 6 O -0.597 6.597 7 N -0.638 5.638 8 C 0.088 3.912 9 C 0.215 3.785 10 O -0.589 6.589 11 C -0.554 4.554 12 H 0.075 0.925 13 C 0.033 3.967 14 N -0.918 5.918 15 Si 0.970 3.030 16 H -0.276 1.276 17 H -0.284 1.284 18 H -0.265 1.265 19 C 0.105 3.895 20 C -0.116 4.116 21 C -0.146 4.146 22 C 0.507 3.493 23 O -0.596 6.596 24 N -0.721 5.721 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.389 0.611 35 H 0.276 0.724 36 H 0.104 0.896 37 H 0.049 0.951 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.125 0.875 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.210 -9.958 13.767 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.071 3.929 3 C -0.134 4.134 4 C -0.166 4.166 5 C 0.318 3.682 6 O -0.479 6.479 7 N -0.371 5.371 8 C -0.035 4.035 9 C 0.174 3.826 10 O -0.402 6.402 11 C -0.592 4.592 12 H 0.093 0.907 13 C -0.168 4.168 14 N -0.558 5.558 15 Si 0.795 3.205 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.190 1.190 19 C -0.018 4.018 20 C -0.153 4.153 21 C -0.186 4.186 22 C 0.295 3.705 23 O -0.478 6.478 24 N -0.375 5.375 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.136 0.864 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.245 0.755 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.143 0.857 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.303 -10.368 14.542 18.630 hybrid contribution -0.256 0.852 -2.054 2.238 sum -5.559 -9.516 12.488 16.656 Atomic orbital electron populations 1.22266 0.92039 1.03410 1.03957 1.21253 0.95381 0.90730 0.85555 1.21615 1.00799 0.93379 0.97566 1.21682 1.03774 0.89794 1.01318 1.20981 0.79970 0.88314 0.78976 1.90617 1.40839 1.79131 1.37339 1.49819 1.50320 1.13651 1.23349 1.23925 0.96955 1.01239 0.81358 1.19802 0.83344 0.90990 0.88461 1.86034 1.35894 1.86472 1.31765 1.21646 1.36687 1.05296 0.95538 0.90702 1.25762 0.95401 0.97153 0.98446 1.69317 1.47147 1.25839 1.13541 0.85417 0.79122 0.78745 0.77227 1.20088 1.20932 1.18961 1.23310 1.00386 0.83974 0.94164 1.22778 1.03905 0.92226 0.96421 1.22385 1.06390 0.99881 0.89962 1.21714 0.74983 0.81154 0.92610 1.90722 1.48123 1.49412 1.59494 1.46711 1.63120 1.15666 1.11972 0.92137 0.91219 0.88906 0.92358 0.88751 0.89406 0.86380 0.91854 0.88526 0.75516 0.91371 0.87836 0.93284 0.89590 0.85754 0.87276 0.85666 0.75679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.41 71.98 0.61 -1.20 16 2 C 0.16 2.35 0.87 4.05 0.00 2.35 16 3 C -0.10 -1.95 3.70 30.60 0.11 -1.83 16 4 C -0.13 -3.16 5.03 29.85 0.15 -3.01 16 5 C 0.53 19.33 8.08 87.66 0.71 20.04 16 6 O -0.60 -25.56 16.76 -3.04 -0.05 -25.61 16 7 N -0.64 -25.35 3.69 -859.36 -3.17 -28.52 16 8 C 0.09 3.52 7.82 83.09 0.65 4.17 16 9 C 0.22 10.08 1.57 -11.30 -0.02 10.06 16 10 O -0.59 -30.54 13.53 -148.98 -2.02 -32.56 16 11 C -0.55 -26.84 8.69 25.60 0.22 -26.62 16 12 H 0.07 3.49 7.81 -2.91 -0.02 3.47 16 13 C 0.03 1.58 5.40 84.65 0.46 2.03 16 14 N -0.92 -45.44 11.01 21.45 0.24 -45.20 16 15 Si 0.97 38.31 29.54 68.60 2.03 40.34 16 16 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 19 C 0.10 4.46 8.03 83.17 0.67 5.12 16 20 C -0.12 -1.21 6.21 31.65 0.20 -1.01 16 21 C -0.15 -1.93 6.86 30.59 0.21 -1.72 16 22 C 0.51 11.96 8.43 87.87 0.74 12.70 16 23 O -0.60 -20.24 18.03 -3.04 -0.05 -20.30 16 24 N -0.72 -14.69 5.40 -419.78 -2.27 -16.95 16 25 H 0.06 0.79 6.49 -2.39 -0.02 0.77 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 29 H 0.09 1.82 8.10 -2.39 -0.02 1.80 16 30 H 0.09 2.22 6.89 -2.39 -0.02 2.20 16 31 H 0.12 2.40 6.48 -2.39 -0.02 2.38 16 32 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.10 3.55 8.10 -2.39 -0.02 3.53 16 34 H 0.39 20.48 6.33 -74.06 -0.47 20.01 16 35 H 0.28 13.03 8.31 -92.71 -0.77 12.26 16 36 H 0.10 3.95 8.10 -2.39 -0.02 3.93 16 37 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 38 H 0.09 0.96 7.91 -2.39 -0.02 0.94 16 39 H 0.12 0.58 7.89 -2.38 -0.02 0.56 16 40 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.40 8.84 7.68 -92.71 -0.71 8.13 16 Total: -1.00 -67.05 345.44 -0.72 -67.78 By element: Atomic # 1 Polarization: 40.08 SS G_CDS: -0.13 Total: 39.95 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 4.71 Total: 21.08 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -5.20 Total: -90.68 kcal Atomic # 8 Polarization: -76.34 SS G_CDS: -2.12 Total: -78.46 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -67.05 -0.72 -67.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356576283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.333 kcal (2) G-P(sol) polarization free energy of solvation -67.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds