Wall clock time and date at job start Tue Mar 31 2020 03:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86796 * 120.00073 * 2 1 4 4 H 1.48508 * 109.47066 * 264.99851 * 3 2 1 5 5 H 1.48498 * 109.47216 * 24.99293 * 3 2 1 6 6 H 1.48495 * 109.47456 * 144.99746 * 3 2 1 7 7 C 1.37879 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99552 * 190.18976 * 7 2 1 9 9 C 1.50698 * 120.00048 * 10.19087 * 7 2 1 10 10 O 1.42909 * 113.41251 * 52.27942 * 9 7 2 11 11 C 1.53497 * 114.20566 * 185.47465 * 9 7 2 12 12 N 1.47064 * 87.98580 * 139.65658 * 11 9 7 13 13 C 1.34781 * 136.05961 * 152.83935 * 12 11 9 14 14 O 1.21280 * 119.99733 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00013 * 180.02562 * 13 12 11 16 16 C 1.53004 * 109.46872 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46721 * 180.02562 * 16 15 13 18 18 N 1.46505 * 109.46850 * 180.02562 * 17 16 15 19 19 C 1.34774 * 119.99680 * 180.02562 * 18 17 16 20 20 O 1.21279 * 120.00513 * 359.97438 * 19 18 17 21 21 C 1.50705 * 119.99469 * 179.97438 * 19 18 17 22 22 C 1.52999 * 117.49784 * 248.74433 * 21 19 18 23 23 C 1.53002 * 117.49465 * 180.08566 * 21 19 18 24 24 C 1.47067 * 87.88526 * 333.10387 * 12 11 9 25 25 H 0.96995 * 119.99814 * 0.02562 * 1 2 3 26 26 H 0.96700 * 113.99612 * 317.20962 * 10 9 7 27 27 H 1.09002 * 113.46527 * 24.87612 * 11 9 7 28 28 H 1.08999 * 113.46823 * 254.43659 * 11 9 7 29 29 H 1.09001 * 109.47054 * 60.00716 * 15 13 12 30 30 H 1.08999 * 109.47518 * 300.00661 * 15 13 12 31 31 H 1.09001 * 109.46964 * 60.00333 * 16 15 13 32 32 H 1.08997 * 109.47125 * 299.99948 * 16 15 13 33 33 H 1.08997 * 109.47206 * 299.99810 * 17 16 15 34 34 H 1.09001 * 109.47202 * 60.00391 * 17 16 15 35 35 H 0.96995 * 119.99917 * 359.97438 * 18 17 16 36 36 H 1.09000 * 115.54978 * 34.41742 * 21 19 18 37 37 H 1.09000 * 117.50052 * 0.02562 * 22 21 19 38 38 H 1.08999 * 117.49955 * 145.02711 * 22 21 19 39 39 H 1.09008 * 117.49501 * 214.97856 * 23 21 19 40 40 H 1.08999 * 117.50322 * 359.97434 * 23 21 19 41 41 H 1.08996 * 113.46981 * 141.67451 * 24 12 11 42 42 H 1.09001 * 113.46638 * 272.11777 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6025 1.9853 -1.3948 5 1 1.3978 2.6809 0.5915 6 1 3.4899 1.4730 0.8031 7 6 2.0046 -1.1941 0.0005 8 1 3.0718 -1.2013 0.1660 9 6 1.2689 -2.4890 -0.2298 10 8 0.4613 -2.4813 -1.4088 11 6 2.1386 -3.7438 -0.0709 12 7 1.0013 -4.3828 0.6081 13 6 0.5578 -5.6438 0.7806 14 8 1.1706 -6.5732 0.2993 15 6 -0.6993 -5.8989 1.5715 16 6 -0.9776 -7.4028 1.6158 17 6 -2.2543 -7.6617 2.4183 18 7 -2.5204 -9.1017 2.4612 19 6 -3.6012 -9.5679 3.1178 20 8 -4.3531 -8.7954 3.6734 21 6 -3.8753 -11.0492 3.1614 22 6 -5.0923 -11.5654 2.3912 23 6 -5.1190 -11.5153 3.9209 24 6 0.5570 -3.0398 1.0103 25 1 -0.4849 0.8400 -0.0004 26 1 -0.0388 -1.6637 -1.5375 27 1 3.0024 -3.5940 0.5768 28 1 2.3985 -4.2147 -1.0190 29 1 -1.5370 -5.3879 1.0970 30 1 -0.5724 -5.5231 2.5868 31 1 -0.1397 -7.9135 2.0905 32 1 -1.1044 -7.7788 0.6007 33 1 -2.1279 -7.2855 3.4335 34 1 -3.0919 -7.1510 1.9432 35 1 -1.9193 -9.7195 2.0165 36 1 -2.9939 -11.6894 3.1978 37 1 -5.6945 -10.8337 1.8525 38 1 -5.0118 -12.5455 1.9212 39 1 -5.0559 -12.4626 4.4565 40 1 -5.7387 -10.7507 4.3893 41 1 -0.5252 -2.9133 0.9798 42 1 0.9953 -2.7006 1.9489 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614707737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:48 Heat of formation + Delta-G solvation = -92.662711 kcal Electronic energy + Delta-G solvation = -23057.374386 eV Core-core repulsion = 19424.318306 eV Total energy + Delta-G solvation = -3633.056080 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32466 -40.96155 -39.29580 -37.41170 -36.44690 -35.88340 -34.22043 -33.75585 -30.72612 -28.51596 -26.97453 -26.75259 -24.85098 -23.31580 -22.85249 -21.86595 -20.97556 -19.89180 -19.21957 -18.45114 -17.90310 -17.32658 -17.17942 -17.00217 -16.40704 -16.29904 -16.01220 -15.85174 -15.26077 -15.10337 -14.81710 -14.40254 -14.07294 -13.83543 -13.58463 -13.54749 -13.24996 -13.21311 -12.79187 -12.73389 -12.52247 -12.44378 -12.24655 -12.16225 -11.95377 -11.54898 -11.45776 -11.31818 -10.99280 -10.87909 -10.71262 -10.19745 -10.16039 -9.58269 -8.27312 -6.42336 1.44696 1.46866 1.51183 1.58264 1.64096 1.88916 2.20955 2.41633 2.92019 2.94759 3.41966 3.66832 3.71870 3.85817 3.93522 3.98027 3.99286 4.09427 4.19926 4.25839 4.44196 4.48573 4.56023 4.64097 4.67168 4.74217 4.83840 4.90993 4.95678 4.98424 5.03087 5.05911 5.17240 5.22319 5.24453 5.39156 5.71128 5.89902 6.50274 6.62786 6.90480 7.14541 7.19291 7.29500 7.31218 8.78234 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.033874 B = 0.002308 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.401532 B =12126.201024 C =12576.808977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.036 3.964 3 Si 0.963 3.037 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.557 4.557 8 H 0.072 0.928 9 C 0.217 3.783 10 O -0.579 6.579 11 C 0.107 3.893 12 N -0.641 5.641 13 C 0.528 3.472 14 O -0.596 6.596 15 C -0.123 4.123 16 C -0.098 4.098 17 C 0.124 3.876 18 N -0.715 5.715 19 C 0.533 3.467 20 O -0.590 6.590 21 C -0.201 4.201 22 C -0.144 4.144 23 C -0.153 4.153 24 C 0.095 3.905 25 H 0.274 0.726 26 H 0.384 0.616 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.417 0.583 36 H 0.153 0.847 37 H 0.085 0.915 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 -17.369 6.221 19.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.166 4.166 3 Si 0.788 3.212 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.595 4.595 8 H 0.090 0.910 9 C 0.176 3.824 10 O -0.387 6.387 11 C -0.016 4.016 12 N -0.374 5.374 13 C 0.320 3.680 14 O -0.479 6.479 15 C -0.163 4.163 16 C -0.136 4.136 17 C 0.001 3.999 18 N -0.367 5.367 19 C 0.321 3.679 20 O -0.471 6.471 21 C -0.222 4.222 22 C -0.181 4.181 23 C -0.191 4.191 24 C -0.028 4.028 25 H 0.083 0.917 26 H 0.234 0.766 27 H 0.120 0.880 28 H 0.072 0.928 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.253 0.747 36 H 0.171 0.829 37 H 0.104 0.896 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.494 -17.985 6.329 20.142 hybrid contribution 0.494 1.565 -0.255 1.661 sum -6.000 -16.420 6.074 18.507 Atomic orbital electron populations 1.69824 1.06905 1.28839 1.48912 1.25709 0.95731 1.02359 0.92787 0.85496 0.78724 0.78646 0.78320 1.20360 1.20881 1.19228 1.21538 0.95462 0.90938 1.51603 0.90964 1.19747 0.88082 0.91892 0.82642 1.86076 1.63607 1.44110 1.44950 1.23288 0.91225 0.90860 0.96234 1.49875 1.28431 1.05601 1.53489 1.20847 0.87166 0.79781 0.80169 1.90608 1.61273 1.42801 1.53233 1.21466 0.94499 0.98673 1.01663 1.21344 0.96908 0.94157 1.01226 1.21257 0.96933 0.81210 1.00545 1.45871 1.27426 1.08654 1.54725 1.20329 0.79945 0.90621 0.76985 1.90683 1.49074 1.60017 1.47312 1.22303 0.96884 0.91819 1.11148 1.23054 0.96791 1.03505 0.94736 1.23031 0.97500 1.03421 0.95104 1.23828 1.00437 0.77406 1.01131 0.91683 0.76590 0.88037 0.92829 0.88076 0.87029 0.90331 0.90970 0.91424 0.91939 0.74658 0.82912 0.89632 0.84933 0.85390 0.89777 0.91748 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.43 11.81 21.45 0.25 -44.18 16 2 C 0.04 1.74 5.21 84.65 0.44 2.18 16 3 Si 0.96 38.51 29.55 68.60 2.03 40.54 16 4 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.56 -26.99 8.65 25.60 0.22 -26.77 16 8 H 0.07 3.41 7.83 -2.91 -0.02 3.39 16 9 C 0.22 10.12 1.41 -11.29 -0.02 10.11 16 10 O -0.58 -28.91 13.56 -148.98 -2.02 -30.93 16 11 C 0.11 4.55 8.03 83.18 0.67 5.22 16 12 N -0.64 -26.01 3.69 -859.30 -3.17 -29.19 16 13 C 0.53 19.93 8.08 87.66 0.71 20.64 16 14 O -0.60 -25.74 16.76 -3.03 -0.05 -25.79 16 15 C -0.12 -3.33 5.53 29.85 0.17 -3.16 16 16 C -0.10 -2.22 4.62 30.60 0.14 -2.07 16 17 C 0.12 2.63 5.67 86.38 0.49 3.12 16 18 N -0.72 -13.21 5.56 -463.05 -2.57 -15.79 16 19 C 0.53 11.72 7.61 87.66 0.67 12.39 16 20 O -0.59 -18.38 16.26 -3.03 -0.05 -18.43 16 21 C -0.20 -2.80 6.19 -11.54 -0.07 -2.87 16 22 C -0.14 -1.67 10.24 30.62 0.31 -1.36 16 23 C -0.15 -2.06 10.05 30.62 0.31 -1.75 16 24 C 0.09 3.92 7.82 83.09 0.65 4.57 16 25 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 26 H 0.38 19.19 7.09 -74.06 -0.53 18.67 16 27 H 0.10 3.94 8.10 -2.39 -0.02 3.92 16 28 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.08 1.76 8.10 -2.39 -0.02 1.75 16 32 H 0.07 1.73 8.10 -2.39 -0.02 1.71 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.42 5.37 8.47 -92.71 -0.79 4.58 16 36 H 0.15 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.08 1.55 7.67 -2.39 -0.02 1.54 16 41 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.09 3.55 8.10 -2.39 -0.02 3.53 16 Total: -1.00 -64.57 360.80 -1.17 -65.75 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -0.27 Total: 37.77 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 4.69 Total: 20.24 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -5.49 Total: -89.15 kcal Atomic # 8 Polarization: -73.03 SS G_CDS: -2.12 Total: -75.15 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -64.57 -1.17 -65.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614707737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.916 kcal (2) G-P(sol) polarization free energy of solvation -64.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds