Wall clock time and date at job start Tue Mar 31 2020 03:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 N 1.28714 * 125.32137 * 2 1 4 4 N 1.28975 * 108.98789 * 180.02562 * 3 2 1 5 5 C 1.34183 * 107.25443 * 359.97438 * 4 3 2 6 6 C 1.48007 * 126.69783 * 179.97438 * 5 4 3 7 7 O 1.21543 * 119.99911 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00113 * 359.74916 * 6 5 4 9 9 C 1.46504 * 119.99858 * 180.27108 * 8 6 5 10 10 C 1.53004 * 109.46929 * 180.02562 * 9 8 6 11 11 H 1.08998 * 110.88213 * 302.57200 * 10 9 8 12 12 C 1.54903 * 111.00479 * 66.45599 * 10 9 8 13 13 N 1.47421 * 104.83128 * 155.08443 * 12 10 9 14 14 C 1.36941 * 125.64720 * 155.83320 * 13 12 10 15 15 H 1.08000 * 120.00127 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99847 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99889 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99940 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47027 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47084 * 120.00102 * 18 16 14 21 21 H 1.48504 * 109.47182 * 239.99762 * 18 16 14 22 22 C 1.47020 * 108.70409 * 335.87164 * 13 12 10 23 23 C 1.54324 * 107.26899 * 1.05839 * 22 13 12 24 24 H 1.09004 * 110.71903 * 140.56019 * 23 22 13 25 25 O 1.42902 * 110.71868 * 263.82996 * 23 22 13 26 26 N 1.28872 * 125.31965 * 180.34869 * 2 1 3 27 27 H 1.09004 * 109.46563 * 89.98338 * 1 2 3 28 28 H 1.09000 * 109.46969 * 209.98106 * 1 2 3 29 29 H 1.09000 * 109.46886 * 329.97943 * 1 2 3 30 30 H 0.97001 * 119.99727 * 0.28007 * 8 6 5 31 31 H 1.08998 * 109.47306 * 300.00567 * 9 8 6 32 32 H 1.08997 * 109.46860 * 60.00391 * 9 8 6 33 33 H 1.09007 * 110.36559 * 273.91785 * 12 10 9 34 34 H 1.09001 * 110.36928 * 36.13325 * 12 10 9 35 35 H 0.97007 * 119.99943 * 180.02562 * 17 16 14 36 36 H 1.08994 * 109.88502 * 120.47677 * 22 13 12 37 37 H 1.08999 * 109.88308 * 241.48817 * 22 13 12 38 38 H 0.96694 * 114.00107 * 293.52167 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2093 1.0502 0.0000 4 7 3.4470 0.6875 -0.0005 5 6 3.4685 -0.6542 -0.0003 6 6 4.6693 -1.5195 -0.0013 7 8 4.5470 -2.7287 -0.0014 8 7 5.8984 -0.9665 -0.0077 9 6 7.0869 -1.8231 -0.0146 10 6 8.3441 -0.9509 -0.0203 11 1 8.3463 -0.2782 -0.8779 12 6 8.4779 -0.1611 1.3055 13 7 9.9201 0.1150 1.4363 14 6 10.4743 1.1406 2.1548 15 1 9.8384 1.8322 2.6875 16 6 11.8536 1.2914 2.1983 17 7 12.6285 0.4489 1.5487 18 14 12.6097 2.6901 3.1789 19 1 11.5310 3.4906 3.8118 20 1 13.4966 2.1334 4.2319 21 1 13.4027 3.5583 2.2720 22 6 10.6647 -0.8926 0.6671 23 6 9.6265 -1.8238 0.0063 24 1 9.9342 -2.0880 -1.0055 25 8 9.4236 -2.9966 0.7971 26 7 2.2102 -1.0515 -0.0064 27 1 -0.3632 0.0003 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 5.9960 -0.0014 -0.0075 31 1 7.0861 -2.4530 0.8749 32 1 7.0764 -2.4518 -0.9050 33 1 7.9166 0.7717 1.2496 34 1 8.1278 -0.7641 2.1433 35 1 13.5924 0.5541 1.5794 36 1 11.2656 -0.4040 -0.0998 37 1 11.3092 -1.4659 1.3334 38 1 10.1958 -3.5765 0.8460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958316973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:06 Heat of formation + Delta-G solvation = 50.889611 kcal Electronic energy + Delta-G solvation = -23552.317087 eV Core-core repulsion = 19854.238311 eV Total energy + Delta-G solvation = -3698.078776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.138 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -45.56777 -40.95789 -39.77997 -36.45408 -36.35450 -36.10958 -34.36744 -33.94123 -31.58543 -29.92352 -29.28975 -27.48061 -26.41335 -24.92036 -23.93929 -22.48855 -21.83867 -21.25354 -19.59194 -19.06130 -18.74129 -18.22377 -17.69849 -17.16028 -16.79692 -16.45534 -15.77465 -15.53947 -15.33660 -15.20284 -14.92673 -14.40736 -14.33679 -14.19701 -14.10512 -13.55408 -13.19020 -13.12006 -13.08455 -12.69709 -12.37068 -12.31059 -12.26185 -12.06420 -11.90228 -11.78367 -11.75089 -11.49954 -11.37978 -10.76797 -10.70288 -10.25889 -8.88863 -7.84898 -5.19513 -0.19287 0.23372 0.79824 1.47207 1.47572 1.58067 1.71386 1.86413 2.49825 2.77308 3.04822 3.30235 3.38471 3.56884 3.90188 3.93515 3.99318 4.02121 4.06844 4.24252 4.44731 4.50677 4.59854 4.62392 4.64893 4.85572 4.90701 4.96760 5.00659 5.16171 5.38589 5.44399 5.55586 5.72972 6.18253 6.20071 6.79618 6.97856 7.00625 7.11350 7.77653 8.41631 9.25438 Molecular weight = 296.14amu Principal moments of inertia in cm(-1) A = 0.021275 B = 0.003275 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.758972 B = 8547.896217 C = 9677.727705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.115 5.115 3 N -0.061 5.061 4 N -0.268 5.268 5 C 0.117 3.883 6 C 0.617 3.383 7 O -0.543 6.543 8 N -0.691 5.691 9 C 0.154 3.846 10 C -0.094 4.094 11 H 0.110 0.890 12 C 0.140 3.860 13 N -0.624 5.624 14 C -0.239 4.239 15 H 0.081 0.919 16 C -0.066 4.066 17 N -0.951 5.951 18 Si 0.977 3.023 19 H -0.267 1.267 20 H -0.294 1.294 21 H -0.290 1.290 22 C 0.158 3.842 23 C 0.098 3.902 24 H 0.091 0.909 25 O -0.570 6.570 26 N -0.261 5.261 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.142 0.858 30 H 0.418 0.582 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.014 0.986 35 H 0.247 0.753 36 H 0.024 0.976 37 H 0.015 0.985 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.025 -2.215 -6.530 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.030 5.030 3 N -0.054 5.054 4 N -0.142 5.142 5 C -0.167 4.167 6 C 0.398 3.602 7 O -0.417 6.417 8 N -0.343 5.343 9 C 0.031 3.969 10 C -0.114 4.114 11 H 0.128 0.872 12 C 0.015 3.985 13 N -0.351 5.351 14 C -0.368 4.368 15 H 0.099 0.901 16 C -0.259 4.259 17 N -0.600 5.600 18 Si 0.806 3.194 19 H -0.191 1.191 20 H -0.221 1.221 21 H -0.217 1.217 22 C 0.033 3.967 23 C 0.038 3.962 24 H 0.109 0.891 25 O -0.378 6.378 26 N -0.117 5.117 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.161 0.839 30 H 0.255 0.745 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.056 0.944 36 H 0.042 0.958 37 H 0.033 0.967 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -23.880 -2.208 -6.403 24.822 hybrid contribution 1.727 0.511 0.640 1.912 sum -22.153 -1.697 -5.763 22.953 Atomic orbital electron populations 1.23285 0.64858 1.09490 1.08798 1.50850 1.12775 0.99445 1.39934 1.78867 0.96087 1.14474 1.15970 1.76132 1.11187 1.09892 1.16995 1.25100 0.93316 0.90448 1.07835 1.16164 0.81235 0.85391 0.77455 1.90834 1.86107 1.14046 1.50754 1.45733 1.04206 1.12044 1.72272 1.21126 0.80589 0.91899 1.03293 1.22596 0.92741 0.96679 0.99366 0.87181 1.21706 0.85239 0.96952 0.94638 1.44694 1.01428 1.31187 1.57768 1.19495 0.90633 1.03986 1.22726 0.90106 1.25606 0.96540 1.01718 1.02025 1.70148 1.03039 1.39297 1.47528 0.85024 0.78189 0.78585 0.77631 1.19143 1.22137 1.21739 1.21708 0.92044 0.89479 0.93460 1.22934 0.94124 0.85064 0.94065 0.89089 1.86373 1.42734 1.34720 1.73946 1.75046 1.02327 1.15491 1.18802 0.85042 0.84995 0.83941 0.74485 0.91268 0.89642 0.93277 0.96768 0.94398 0.95827 0.96699 0.75893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.20 11.62 127.77 1.49 1.68 16 2 N -0.11 -1.97 4.39 -206.56 -0.91 -2.88 16 3 N -0.06 -1.32 13.23 37.02 0.49 -0.83 16 4 N -0.27 -7.06 12.26 -52.37 -0.64 -7.71 16 5 C 0.12 3.22 8.14 137.15 1.12 4.33 16 6 C 0.62 18.63 7.84 86.83 0.68 19.31 16 7 O -0.54 -19.46 17.10 -3.85 -0.07 -19.52 16 8 N -0.69 -18.86 5.40 -465.80 -2.52 -21.38 16 9 C 0.15 4.45 4.74 86.38 0.41 4.86 16 10 C -0.09 -3.02 3.03 -9.40 -0.03 -3.04 16 11 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 12 C 0.14 5.65 6.40 86.85 0.56 6.21 16 13 N -0.62 -31.80 3.39 -692.01 -2.35 -34.15 16 14 C -0.24 -13.43 10.28 84.03 0.86 -12.57 16 15 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 16 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 17 N -0.95 -56.46 10.31 21.65 0.22 -56.24 16 18 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 C 0.16 7.51 5.14 86.73 0.45 7.96 16 23 C 0.10 3.38 4.09 31.78 0.13 3.51 16 24 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 25 O -0.57 -18.74 12.09 -148.98 -1.80 -20.54 16 26 N -0.26 -6.35 12.17 -52.32 -0.64 -6.99 16 27 H 0.13 -0.22 8.14 -2.38 -0.02 -0.24 16 28 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.14 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.42 10.45 8.09 -92.71 -0.75 9.70 16 31 H 0.07 2.30 7.42 -2.39 -0.02 2.29 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.01 0.62 8.00 -2.39 -0.02 0.60 16 35 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 36 H 0.02 1.24 7.38 -2.39 -0.02 1.22 16 37 H 0.01 0.80 7.43 -2.39 -0.02 0.78 16 38 H 0.39 10.09 9.12 -74.06 -0.68 9.41 16 Total: -1.00 -79.03 328.55 -0.36 -79.39 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -0.31 Total: 13.97 kcal Atomic # 6 Polarization: 22.85 SS G_CDS: 6.12 Total: 28.97 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -6.34 Total: -130.18 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -1.87 Total: -40.06 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -79.03 -0.36 -79.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958316973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.283 kcal (2) G-P(sol) polarization free energy of solvation -79.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds