Wall clock time and date at job start Tue Mar 31 2020 04:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99974 * 2 1 4 4 H 1.48504 * 109.46809 * 269.99349 * 3 2 1 5 5 H 1.48501 * 109.47398 * 29.99603 * 3 2 1 6 6 H 1.48500 * 109.47236 * 149.99835 * 3 2 1 7 7 C 1.38812 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00512 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99791 * 0.02562 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.66689 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09006 * 117.40754 * 252.33884 * 16 13 11 18 18 N 1.46503 * 117.44579 * 107.64647 * 16 13 11 19 19 C 1.34775 * 119.99929 * 135.75651 * 18 16 13 20 20 O 1.21285 * 120.00261 * 0.02562 * 19 18 16 21 21 C 1.50699 * 119.99742 * 180.02562 * 19 18 16 22 22 C 1.53005 * 109.47066 * 180.02562 * 21 19 18 23 23 O 1.42968 * 109.46926 * 294.99988 * 22 21 19 24 24 C 1.43086 * 113.76880 * 181.20426 * 23 22 21 25 25 C 1.53263 * 108.94142 * 57.97070 * 24 23 22 26 26 C 1.53260 * 108.84535 * 305.47398 * 25 24 23 27 27 O 1.42970 * 109.47164 * 175.00076 * 22 21 19 28 28 H 0.96995 * 119.99869 * 0.02562 * 1 2 3 29 29 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 30 30 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 31 31 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 32 32 H 1.08995 * 110.50834 * 338.42485 * 15 9 7 33 33 H 0.96998 * 119.99589 * 315.76144 * 18 16 13 34 34 H 1.09003 * 109.47217 * 300.00225 * 21 19 18 35 35 H 1.08993 * 109.47620 * 60.00389 * 21 19 18 36 36 H 1.08996 * 109.47185 * 55.00210 * 22 21 19 37 37 H 1.09007 * 109.56325 * 298.13373 * 24 23 22 38 38 H 1.08998 * 109.65273 * 177.86149 * 24 23 22 39 39 H 1.09008 * 109.57444 * 185.66466 * 25 24 23 40 40 H 1.08998 * 109.57827 * 65.28746 * 25 24 23 41 41 H 1.08995 * 109.55833 * 294.68345 * 26 25 24 42 42 H 1.08997 * 109.64576 * 174.41706 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1793 -2.5891 0.0070 11 6 -0.3706 -3.7840 -0.9519 12 1 -0.9337 -3.6107 -1.8690 13 6 0.9655 -4.5554 -0.9512 14 1 1.3978 -4.9568 -1.8678 15 6 1.8844 -3.7601 0.0005 16 6 -0.2955 -5.1963 -0.3682 17 1 -0.3527 -5.2955 0.7158 18 7 -0.9195 -6.2777 -1.1347 19 6 -1.3390 -7.3938 -0.5065 20 8 -1.2003 -7.5029 0.6934 21 6 -1.9803 -8.5064 -1.2951 22 6 -2.3619 -9.6473 -0.3498 23 8 -1.1772 -10.2166 0.2127 24 6 -1.4277 -11.3152 1.0945 25 6 -2.1942 -12.4010 0.3313 26 6 -3.4532 -11.7792 -0.2830 27 8 -3.0740 -10.6512 -1.0773 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7144 -1.7149 -0.3637 30 1 -0.5205 -2.8479 1.0094 31 1 1.8505 -4.1843 1.0040 32 1 2.9077 -3.7556 -0.3749 33 1 -1.0307 -6.1903 -2.0943 34 1 -2.8755 -8.1311 -1.7910 35 1 -1.2776 -8.8736 -2.0431 36 1 -2.9941 -9.2608 0.4496 37 1 -2.0236 -10.9748 1.9415 38 1 -0.4816 -11.7204 1.4534 39 1 -2.4785 -13.1985 1.0179 40 1 -1.5634 -12.8056 -0.4601 41 1 -4.1257 -11.4565 0.5117 42 1 -3.9564 -12.5148 -0.9105 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958628852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:23 Heat of formation + Delta-G solvation = -86.714925 kcal Electronic energy + Delta-G solvation = -23744.953285 eV Core-core repulsion = 20112.155121 eV Total energy + Delta-G solvation = -3632.798164 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37114 -40.66328 -39.56128 -36.68434 -35.97689 -34.41733 -34.08347 -32.19702 -30.94905 -28.82038 -27.62482 -26.92814 -25.13222 -23.32580 -22.13482 -21.93739 -21.38167 -20.78491 -18.91391 -18.74149 -17.88159 -17.82064 -17.21367 -16.93378 -16.68179 -15.96899 -15.84880 -15.71612 -15.49046 -15.03578 -14.66698 -14.53520 -14.29427 -13.92795 -13.74445 -13.34960 -13.19442 -13.01771 -12.91512 -12.70373 -12.42059 -12.12783 -12.10215 -12.07873 -11.98704 -11.71172 -11.64021 -11.08691 -10.99021 -10.91432 -10.68343 -10.64893 -9.69275 -8.96534 -7.75801 -5.23205 1.48554 1.50571 1.54293 1.59257 1.80051 2.49427 2.64926 2.71909 2.88292 3.33468 3.54030 3.64494 3.78540 3.79151 3.84751 3.87154 3.94273 4.09162 4.16726 4.24518 4.38265 4.40791 4.44641 4.52115 4.56854 4.69878 4.82914 4.83378 4.86555 4.92874 4.99140 5.11346 5.29005 5.40671 5.45937 5.54819 5.77970 5.83415 6.15120 6.26196 6.52438 7.02623 7.22736 7.69392 8.44414 9.25838 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.052942 B = 0.002475 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.756975 B =11311.332317 C =11503.763873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.071 4.071 3 Si 0.985 3.015 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.231 4.231 8 H 0.084 0.916 9 N -0.625 5.625 10 C 0.153 3.847 11 C -0.172 4.172 12 H 0.122 0.878 13 C -0.172 4.172 14 H 0.131 0.869 15 C 0.153 3.847 16 C 0.117 3.883 17 H 0.105 0.895 18 N -0.683 5.683 19 C 0.521 3.479 20 O -0.575 6.575 21 C -0.118 4.118 22 C 0.262 3.738 23 O -0.406 6.406 24 C 0.045 3.955 25 C -0.185 4.185 26 C 0.048 3.952 27 O -0.404 6.404 28 H 0.249 0.751 29 H 0.109 0.891 30 H -0.004 1.004 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.419 0.581 34 H 0.148 0.852 35 H 0.128 0.872 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.539 -24.741 -4.792 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.263 4.263 3 Si 0.813 3.187 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.197 1.197 7 C -0.359 4.359 8 H 0.102 0.898 9 N -0.350 5.350 10 C 0.029 3.971 11 C -0.193 4.193 12 H 0.140 0.860 13 C -0.194 4.194 14 H 0.149 0.851 15 C 0.027 3.973 16 C 0.010 3.990 17 H 0.122 0.878 18 N -0.334 5.334 19 C 0.309 3.691 20 O -0.453 6.453 21 C -0.157 4.157 22 C 0.166 3.834 23 O -0.327 6.327 24 C -0.031 4.031 25 C -0.223 4.223 26 C -0.027 4.027 27 O -0.326 6.326 28 H 0.059 0.941 29 H 0.127 0.873 30 H 0.014 0.986 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.257 0.743 34 H 0.165 0.835 35 H 0.147 0.853 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.287 -24.485 -4.163 25.884 hybrid contribution 0.222 0.966 0.253 1.023 sum -7.065 -23.520 -3.910 24.867 Atomic orbital electron populations 1.69740 1.06229 1.25051 1.58927 1.25618 0.96651 1.00926 1.03064 0.84974 0.77417 0.78764 0.77521 1.21053 1.22068 1.19708 1.19494 0.90956 0.83390 1.42109 0.89833 1.46434 1.02167 1.00459 1.85950 1.22312 0.84793 0.96374 0.93656 1.24316 1.01338 0.91000 1.02665 0.86002 1.24302 0.90248 1.02265 1.02559 0.85076 1.21191 0.96030 0.84446 0.95635 1.21408 0.96746 0.85399 0.95456 0.87756 1.45147 1.60433 1.15849 1.11934 1.20771 0.77535 0.82960 0.87836 1.90722 1.57215 1.80459 1.16935 1.21464 1.05093 0.90827 0.98309 1.22838 0.83015 0.86659 0.90874 1.88143 1.32376 1.49333 1.62854 1.22850 1.02171 0.86380 0.91659 1.22767 0.98179 0.99347 1.01967 1.22935 0.95842 0.87812 0.96156 1.88018 1.73938 1.31611 1.38990 0.94108 0.87330 0.98601 0.96174 0.92058 0.74310 0.83460 0.85348 0.92928 0.92875 0.87642 0.87128 0.90309 0.92044 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.38 10.12 21.65 0.22 -56.16 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.99 45.71 29.55 68.60 2.03 47.73 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.23 -13.06 10.42 84.03 0.88 -12.18 16 8 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 9 N -0.63 -32.94 3.46 -678.24 -2.35 -35.29 16 10 C 0.15 7.65 6.43 85.80 0.55 8.21 16 11 C -0.17 -6.52 6.96 -9.89 -0.07 -6.59 16 12 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 13 C -0.17 -6.08 7.06 -9.90 -0.07 -6.15 16 14 H 0.13 3.91 8.14 -2.38 -0.02 3.89 16 15 C 0.15 6.56 7.05 86.53 0.61 7.17 16 16 C 0.12 3.94 5.96 44.99 0.27 4.20 16 17 H 0.10 4.14 7.40 -2.38 -0.02 4.13 16 18 N -0.68 -17.00 5.56 -442.53 -2.46 -19.46 16 19 C 0.52 13.94 7.71 87.66 0.68 14.61 16 20 O -0.57 -20.93 14.99 10.74 0.16 -20.77 16 21 C -0.12 -2.15 5.78 29.85 0.17 -1.98 16 22 C 0.26 5.75 2.80 71.98 0.20 5.95 16 23 O -0.41 -10.37 9.77 -120.75 -1.18 -11.55 16 24 C 0.05 0.82 6.96 72.07 0.50 1.33 16 25 C -0.18 -2.26 6.35 30.77 0.20 -2.07 16 26 C 0.05 0.63 6.96 72.07 0.50 1.13 16 27 O -0.40 -7.72 10.54 -126.22 -1.33 -9.05 16 28 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.11 6.10 5.34 -2.39 -0.01 6.08 16 30 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.42 7.29 8.83 -92.71 -0.82 6.47 16 34 H 0.15 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.26 7.96 -2.39 -0.02 1.24 16 37 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -74.42 342.77 0.18 -74.24 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.21 Total: 20.22 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 4.88 Total: 10.09 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -4.59 Total: -110.92 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -2.35 Total: -41.37 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -74.42 0.18 -74.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958628852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.470 kcal (2) G-P(sol) polarization free energy of solvation -74.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds