Wall clock time and date at job start Tue Mar 31 2020 03:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30375 * 125.96698 * 2 1 4 4 N 1.39920 * 109.02121 * 180.28271 * 3 2 1 5 5 C 1.46499 * 125.74363 * 179.74877 * 4 3 2 6 6 C 1.34418 * 108.51330 * 359.71678 * 4 3 2 7 7 F 1.35090 * 126.34185 * 179.97438 * 6 4 3 8 8 C 1.38504 * 107.31093 * 359.97438 * 6 4 3 9 9 C 1.47169 * 126.45461 * 180.02562 * 8 6 4 10 10 O 1.21632 * 120.00168 * 90.02408 * 9 8 6 11 11 N 1.34774 * 119.99857 * 270.01542 * 9 8 6 12 12 C 1.46500 * 120.00029 * 179.97438 * 11 9 8 13 13 H 1.09001 * 112.85215 * 317.24594 * 12 11 9 14 14 C 1.53783 * 113.61213 * 88.44285 * 12 11 9 15 15 C 1.53774 * 87.08154 * 89.11481 * 14 12 11 16 16 H 1.09001 * 113.61606 * 140.06664 * 15 14 12 17 17 N 1.46504 * 113.61853 * 270.88061 * 15 14 12 18 18 C 1.36931 * 120.00654 * 200.64418 * 17 15 14 19 19 H 1.08000 * 119.99670 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00462 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00457 * 180.27846 * 20 18 17 22 22 Si 1.86799 * 119.99970 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47277 * 89.99949 * 22 20 18 24 24 H 1.48504 * 109.47492 * 210.00215 * 22 20 18 25 25 H 1.48504 * 109.47110 * 330.00130 * 22 20 18 26 26 C 1.53777 * 87.08421 * 25.43166 * 15 14 12 27 27 H 1.08996 * 109.46804 * 270.18389 * 1 2 3 28 28 H 1.09000 * 109.47154 * 30.18765 * 1 2 3 29 29 H 1.08997 * 109.46820 * 150.18887 * 1 2 3 30 30 H 1.08999 * 109.46986 * 269.96315 * 5 4 3 31 31 H 1.09002 * 109.46798 * 29.95972 * 5 4 3 32 32 H 1.09000 * 109.46945 * 149.96426 * 5 4 3 33 33 H 0.97002 * 119.99961 * 0.02562 * 11 9 8 34 34 H 1.09002 * 113.61567 * 334.56431 * 14 12 11 35 35 H 1.08999 * 113.61633 * 203.66948 * 14 12 11 36 36 H 0.97006 * 119.99620 * 20.64954 * 17 15 14 37 37 H 0.97003 * 120.00178 * 179.72485 * 21 20 18 38 38 H 1.09003 * 113.61242 * 89.10914 * 26 15 14 39 39 H 1.08999 * 113.61844 * 220.01933 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2728 1.0552 0.0000 4 7 3.6112 0.6474 -0.0065 5 6 4.7764 1.5354 -0.0138 6 6 3.6480 -0.6963 -0.0043 7 9 4.7576 -1.4668 -0.0094 8 6 2.3375 -1.1444 0.0043 9 6 1.8931 -2.5474 0.0100 10 8 1.7151 -3.1247 1.0657 11 7 1.6833 -3.1926 -1.1546 12 6 1.2414 -4.5893 -1.1489 13 1 1.7681 -5.1969 -0.4130 14 6 -0.2871 -4.7517 -1.1016 15 6 -0.2603 -4.7107 -2.6385 16 1 -0.9469 -5.4164 -3.1062 17 7 -0.3702 -3.3586 -3.1916 18 6 -0.7804 -3.1793 -4.4857 19 1 -1.0233 -4.0348 -5.0986 20 6 -0.8841 -1.8983 -5.0099 21 7 -1.2836 -1.7257 -6.2521 22 14 -0.4647 -0.4186 -3.9497 23 1 0.9768 -0.0950 -4.0994 24 1 -1.2806 0.7455 -4.3794 25 1 -0.7571 -0.7299 -2.5274 26 6 1.1866 -5.2237 -2.5487 27 1 -0.3633 0.0033 1.0276 28 1 -0.3633 0.8883 -0.5167 29 1 -0.3633 -0.8917 -0.5109 30 1 5.0603 1.7537 -1.0433 31 1 4.5283 2.4644 0.4995 32 1 5.6073 1.0486 0.4968 33 1 1.8255 -2.7322 -1.9965 34 1 -0.8025 -3.9035 -0.6510 35 1 -0.6120 -5.7098 -0.6958 36 1 -0.1524 -2.5902 -2.6411 37 1 -1.3599 -0.8302 -6.6171 38 1 1.2646 -6.3109 -2.5386 39 1 1.8609 -4.7566 -3.2665 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023033181.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:29 Heat of formation + Delta-G solvation = 19.757493 kcal Electronic energy + Delta-G solvation = -24763.436299 eV Core-core repulsion = 21044.087571 eV Total energy + Delta-G solvation = -3719.348728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.54463 -42.59532 -41.11081 -39.21627 -35.55822 -35.33899 -34.14929 -32.49177 -31.51429 -30.56321 -27.41188 -26.58272 -26.17890 -24.60936 -23.18830 -22.00235 -21.31702 -20.66075 -19.47157 -19.14840 -18.16073 -17.86803 -17.33837 -17.10826 -16.61404 -16.26002 -15.93739 -15.79317 -15.43651 -15.19304 -14.94190 -14.70481 -14.44860 -14.27387 -13.87628 -13.78931 -13.47625 -13.44657 -13.18071 -13.14848 -12.84250 -12.54915 -12.16914 -12.00407 -11.90935 -11.75588 -11.24421 -11.00612 -10.94221 -10.51231 -10.05946 -9.98137 -9.29357 -8.01372 -5.34887 0.12851 0.79364 0.99948 1.31862 1.35525 1.36798 1.45504 2.16699 2.47214 2.61950 3.17982 3.28909 3.52099 3.64031 3.68803 3.77845 3.96947 3.99476 4.14757 4.24627 4.25020 4.35706 4.52410 4.56532 4.61108 4.73998 4.82973 4.93068 5.01084 5.07296 5.16426 5.24921 5.31727 5.54229 5.58565 5.83323 6.12932 6.23295 6.38706 7.04914 7.08706 7.85475 8.03710 9.19382 Molecular weight = 296.14amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.006707 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.034593 B = 4173.967375 C = 5365.699329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.125 3.875 3 N -0.281 5.281 4 N -0.366 5.366 5 C 0.079 3.921 6 C 0.296 3.704 7 F -0.082 7.082 8 C -0.318 4.318 9 C 0.605 3.395 10 O -0.560 6.560 11 N -0.695 5.695 12 C 0.122 3.878 13 H 0.099 0.901 14 C -0.153 4.153 15 C 0.147 3.853 16 H 0.068 0.932 17 N -0.733 5.733 18 C -0.225 4.225 19 H 0.063 0.937 20 C -0.060 4.060 21 N -0.982 5.982 22 Si 0.931 3.069 23 H -0.285 1.285 24 H -0.300 1.300 25 H -0.233 1.233 26 C -0.159 4.159 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.403 0.597 34 H 0.054 0.946 35 H 0.121 0.879 36 H 0.365 0.635 37 H 0.256 0.744 38 H 0.122 0.878 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.078 2.720 15.274 19.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 N -0.105 5.105 4 N -0.150 5.150 5 C -0.059 4.059 6 C 0.146 3.854 7 F -0.061 7.061 8 C -0.334 4.334 9 C 0.390 3.610 10 O -0.438 6.438 11 N -0.346 5.346 12 C 0.018 3.982 13 H 0.117 0.883 14 C -0.193 4.193 15 C 0.037 3.963 16 H 0.086 0.914 17 N -0.375 5.375 18 C -0.356 4.356 19 H 0.081 0.919 20 C -0.252 4.252 21 N -0.632 5.632 22 Si 0.759 3.241 23 H -0.212 1.212 24 H -0.227 1.227 25 H -0.157 1.157 26 C -0.199 4.199 27 H 0.126 0.874 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.239 0.761 34 H 0.073 0.927 35 H 0.140 0.860 36 H 0.199 0.801 37 H 0.065 0.935 38 H 0.140 0.860 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.090 3.587 15.806 20.220 hybrid contribution 0.557 0.372 -0.487 0.828 sum 12.646 3.959 15.319 20.255 Atomic orbital electron populations 1.20580 0.84561 1.04370 1.05167 1.22420 0.97909 0.87945 0.95793 1.77278 0.84987 1.21040 1.27148 1.49076 1.07836 1.02540 1.55560 1.22567 0.82477 0.94827 1.06041 1.17691 0.82969 0.82620 1.02088 1.91664 1.49186 1.71547 1.93736 1.19759 0.91464 0.95420 1.26736 1.17097 0.76181 0.84173 0.83581 1.90744 1.52886 1.68318 1.31855 1.45968 1.66864 1.13595 1.08142 1.21955 0.95748 0.81176 0.99353 0.88274 1.23820 0.95628 1.03391 0.96433 1.21462 0.95596 0.86160 0.93037 0.91396 1.42549 1.80916 1.03256 1.10818 1.19058 1.35234 0.93064 0.88218 0.91933 1.25400 1.02490 1.00026 0.97265 1.69867 1.55627 1.21793 1.15946 0.85801 0.77502 0.79831 0.80970 1.21161 1.22675 1.15666 1.23992 0.99595 1.02038 0.94299 0.87381 0.89066 0.90761 0.88284 0.86449 0.86713 0.76087 0.92728 0.86037 0.80106 0.93535 0.86007 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.38 9.97 71.24 0.71 -1.67 16 2 C 0.13 3.76 7.26 43.56 0.32 4.08 16 3 N -0.28 -7.96 12.49 -46.64 -0.58 -8.54 16 4 N -0.37 -8.67 3.98 -368.86 -1.47 -10.14 16 5 C 0.08 0.97 11.43 127.77 1.46 2.43 16 6 C 0.30 8.02 8.70 84.36 0.73 8.75 16 7 F -0.08 -2.03 17.31 44.97 0.78 -1.25 16 8 C -0.32 -9.91 5.89 -20.09 -0.12 -10.03 16 9 C 0.60 20.24 7.35 86.59 0.64 20.88 16 10 O -0.56 -21.30 16.99 -4.13 -0.07 -21.37 16 11 N -0.70 -22.02 4.43 -443.54 -1.96 -23.98 16 12 C 0.12 3.50 4.04 45.52 0.18 3.69 16 13 H 0.10 2.66 7.97 -2.39 -0.02 2.65 16 14 C -0.15 -4.45 7.61 31.12 0.24 -4.21 16 15 C 0.15 5.09 4.55 45.51 0.21 5.30 16 16 H 0.07 2.41 8.12 -2.39 -0.02 2.39 16 17 N -0.73 -31.91 4.75 -320.47 -1.52 -33.43 16 18 C -0.22 -12.21 10.46 84.03 0.88 -11.33 16 19 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 20 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 21 N -0.98 -61.77 13.97 21.65 0.30 -61.46 16 22 Si 0.93 43.63 27.73 68.60 1.90 45.53 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 25 H -0.23 -9.45 5.02 99.48 0.50 -8.95 16 26 C -0.16 -4.50 7.57 31.12 0.24 -4.27 16 27 H 0.11 2.41 8.14 -2.39 -0.02 2.40 16 28 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.20 6.86 -2.39 -0.02 2.18 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.40 13.33 7.65 -92.71 -0.71 12.62 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.36 15.36 4.24 -92.70 -0.39 14.96 16 37 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -72.62 335.72 3.11 -69.51 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -0.21 Total: 34.52 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 5.95 Total: 10.63 kcal Atomic # 7 Polarization: -132.34 SS G_CDS: -5.24 Total: -137.57 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.07 Total: -21.37 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.25 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.90 Total: 45.53 kcal Total: -72.62 3.11 -69.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023033181.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.270 kcal (2) G-P(sol) polarization free energy of solvation -72.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds