Wall clock time and date at job start Tue Mar 31 2020 03:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00226 * 2 1 4 4 H 1.07997 * 120.00228 * 213.94502 * 3 2 1 5 5 C 1.38808 * 119.99708 * 33.94952 * 3 2 1 6 6 N 1.31618 * 120.00340 * 5.47483 * 5 3 2 7 7 Si 1.86806 * 119.99955 * 185.47421 * 5 3 2 8 8 H 1.48507 * 109.47038 * 89.99795 * 7 5 3 9 9 H 1.48499 * 109.47095 * 210.00074 * 7 5 3 10 10 H 1.48499 * 109.46870 * 330.00034 * 7 5 3 11 11 C 1.46498 * 119.99681 * 180.02562 * 2 1 3 12 12 H 1.08998 * 109.49867 * 180.02562 * 11 2 1 13 13 C 1.53045 * 109.49862 * 59.99654 * 11 2 1 14 14 C 1.53040 * 109.54031 * 178.68390 * 13 11 2 15 15 C 1.53190 * 109.31431 * 61.36435 * 14 13 11 16 16 N 1.46929 * 108.89115 * 305.29723 * 15 14 13 17 17 C 1.34778 * 120.62889 * 233.68010 * 16 15 14 18 18 O 1.21581 * 119.99998 * 355.07718 * 17 16 15 19 19 C 1.47619 * 120.00329 * 175.07922 * 17 16 15 20 20 N 1.31873 * 126.45354 * 5.79199 * 19 17 16 21 21 N 1.28466 * 110.14972 * 179.82059 * 20 19 17 22 22 H 0.97009 * 124.93448 * 180.18574 * 21 20 19 23 23 C 1.35725 * 110.13620 * 0.45417 * 21 20 19 24 24 C 1.35537 * 107.11567 * 359.72809 * 23 21 20 25 25 F 1.35106 * 127.24529 * 180.02562 * 24 23 21 26 26 C 1.47200 * 118.55830 * 53.53741 * 16 15 14 27 27 H 1.08997 * 109.46442 * 265.04685 * 1 2 3 28 28 H 1.08998 * 109.47163 * 25.03945 * 1 2 3 29 29 H 1.08994 * 109.47438 * 145.04308 * 1 2 3 30 30 H 0.96999 * 120.00250 * 180.02562 * 6 5 3 31 31 H 1.09002 * 109.45681 * 58.66060 * 13 11 2 32 32 H 1.08995 * 109.46111 * 298.70194 * 13 11 2 33 33 H 1.09002 * 109.49664 * 301.41276 * 14 13 11 34 34 H 1.09001 * 109.52306 * 181.33812 * 14 13 11 35 35 H 1.09000 * 109.58677 * 65.15443 * 15 14 13 36 36 H 1.08997 * 109.58978 * 185.43756 * 15 14 13 37 37 H 1.08004 * 126.44185 * 179.70811 * 23 21 20 38 38 H 1.09001 * 109.53544 * 186.67148 * 26 16 15 39 39 H 1.09001 * 109.55849 * 66.29552 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.0917 1.2656 -0.5222 5 6 1.6332 2.2855 0.6714 6 7 0.5420 2.1608 1.3967 7 14 2.4867 3.9424 0.5454 8 1 1.9331 4.6981 -0.6068 9 1 2.2619 4.7113 1.7958 10 1 3.9437 3.7348 0.3471 11 6 2.1975 -1.2688 -0.0006 12 1 3.2692 -1.0702 0.0000 13 6 1.8281 -2.0713 -1.2503 14 6 2.6173 -3.3823 -1.2685 15 6 2.2494 -4.2124 -0.0347 16 7 2.4660 -3.3976 1.1687 17 6 3.2376 -3.8520 2.1760 18 8 3.6890 -4.9801 2.1346 19 6 3.5345 -2.9801 3.3295 20 7 3.0300 -1.7832 3.5574 21 7 3.5003 -1.3061 4.6535 22 1 3.2708 -0.4403 5.0262 23 6 4.3696 -2.1866 5.2115 24 6 4.4194 -3.2685 4.3966 25 9 5.1577 -4.3871 4.5669 26 6 1.8248 -2.0749 1.2476 27 1 -0.3632 -0.0887 1.0238 28 1 -0.3633 0.9311 -0.4349 29 1 -0.3634 -0.8422 -0.5888 30 1 0.1808 2.9294 1.8655 31 1 2.0696 -1.4896 -2.1399 32 1 0.7604 -2.2904 -1.2387 33 1 3.6852 -3.1643 -1.2551 34 1 2.3718 -3.9428 -2.1706 35 1 1.2019 -4.5080 -0.0922 36 1 2.8782 -5.1017 0.0082 37 1 4.9185 -2.0506 6.1316 38 1 2.1751 -1.5526 2.1380 39 1 0.7426 -2.1962 1.2946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027565663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:39 Heat of formation + Delta-G solvation = 36.131716 kcal Electronic energy + Delta-G solvation = -24949.969789 eV Core-core repulsion = 21231.331100 eV Total energy + Delta-G solvation = -3718.638688 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.56942 -42.65763 -39.57335 -37.31466 -34.84095 -32.78740 -31.73376 -31.07407 -30.46936 -28.65054 -25.97545 -25.64894 -23.57200 -23.29099 -22.04021 -21.14489 -19.73089 -19.11354 -18.15646 -16.99404 -16.54655 -16.33143 -15.82872 -15.62809 -15.09724 -14.95195 -14.63530 -14.30127 -14.07721 -13.87975 -13.55542 -13.27217 -12.95703 -12.61314 -12.43448 -11.99293 -11.86502 -11.30274 -11.04302 -10.85035 -10.79826 -10.52127 -10.38705 -10.33575 -10.03917 -9.93843 -9.77979 -9.59182 -9.34700 -8.96560 -8.56270 -8.23994 -6.60909 -5.79675 -3.33714 1.53489 1.82569 2.65422 3.21326 3.31808 3.38462 3.39915 3.50497 4.16264 4.43447 4.56995 4.79107 4.94017 5.18030 5.31368 5.33724 5.36769 5.48273 5.65700 5.79049 5.85149 6.04964 6.13385 6.25216 6.27611 6.39451 6.47053 6.56230 6.74730 6.79402 6.91432 7.03190 7.15084 7.33119 7.61776 7.66273 7.77495 7.87497 8.40111 8.45066 9.21332 9.81133 10.37249 11.25356 Molecular weight = 296.14amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.006059 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.466332 B = 4620.314435 C = 6087.783286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.587 5.587 3 C -0.256 4.256 4 H 0.062 0.938 5 C 0.012 3.988 6 N -0.901 5.901 7 Si 0.900 3.100 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.170 3.830 12 H 0.062 0.938 13 C -0.135 4.135 14 C -0.130 4.130 15 C 0.113 3.887 16 N -0.590 5.590 17 C 0.599 3.401 18 O -0.543 6.543 19 C -0.029 4.029 20 N -0.206 5.206 21 N -0.368 5.368 22 H 0.457 0.543 23 C -0.039 4.039 24 C 0.032 3.968 25 F -0.104 7.104 26 C 0.060 3.940 27 H 0.020 0.980 28 H 0.048 0.952 29 H -0.003 1.003 30 H 0.252 0.748 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.196 0.804 38 H 0.139 0.861 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.078 -7.942 5.001 10.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.308 5.308 3 C -0.386 4.386 4 H 0.080 0.920 5 C -0.187 4.187 6 N -0.544 5.544 7 Si 0.730 3.270 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.061 3.939 12 H 0.080 0.920 13 C -0.175 4.175 14 C -0.168 4.168 15 C -0.009 4.009 16 N -0.322 5.322 17 C 0.385 3.615 18 O -0.419 6.419 19 C -0.190 4.190 20 N -0.042 5.042 21 N -0.083 5.083 22 H 0.304 0.696 23 C -0.185 4.185 24 C 0.002 3.998 25 F -0.082 7.082 26 C -0.064 4.064 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.213 0.787 38 H 0.156 0.844 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.506 -7.675 4.635 9.627 hybrid contribution 0.837 0.848 0.610 1.338 sum 4.342 -6.827 5.245 9.642 Atomic orbital electron populations 1.20742 0.83157 0.97041 0.97553 1.43753 1.01448 0.99931 1.85697 1.19123 1.05353 0.87860 1.26288 0.92040 1.25271 0.97900 0.98972 0.96553 1.70008 1.22208 1.29342 1.32860 0.86345 0.79404 0.84247 0.77043 1.21372 1.21721 1.20473 1.20647 0.96305 0.86275 0.90658 0.91954 1.22099 0.99657 0.95139 1.00586 1.21896 1.00970 0.97154 0.96821 1.21613 1.01303 0.94286 0.83726 1.48193 1.47564 1.19643 1.16819 1.16850 0.78693 0.85124 0.80856 1.90777 1.53758 1.18477 1.78917 1.22237 1.03005 0.94301 0.99467 1.73730 1.19639 1.09302 1.01527 1.43433 1.31099 1.17749 1.16039 0.69598 1.22645 1.01457 0.91655 1.02701 1.17118 0.99095 0.86521 0.97086 1.91512 1.74047 1.47727 1.94956 1.23647 0.97287 0.80707 1.04792 0.96193 0.93310 0.98477 0.93744 0.91915 0.92305 0.91835 0.91244 0.91622 0.89463 0.78744 0.84440 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.75 7.99 59.85 0.48 4.23 16 2 N -0.59 -14.03 2.78 -173.35 -0.48 -14.51 16 3 C -0.26 -6.75 9.46 -15.06 -0.14 -6.90 16 4 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 5 C 0.01 0.33 5.17 -17.43 -0.09 0.24 16 6 N -0.90 -24.79 11.10 55.49 0.62 -24.17 16 7 Si 0.90 20.88 29.56 -169.99 -5.02 15.86 16 8 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 C 0.17 3.46 2.75 -67.81 -0.19 3.27 16 12 H 0.06 1.35 7.89 -51.93 -0.41 0.94 16 13 C -0.14 -2.32 5.10 -26.69 -0.14 -2.46 16 14 C -0.13 -1.87 6.08 -26.61 -0.16 -2.03 16 15 C 0.11 1.71 6.41 -3.71 -0.02 1.69 16 16 N -0.59 -10.41 2.98 -173.74 -0.52 -10.93 16 17 C 0.60 11.22 7.70 -12.43 -0.10 11.12 16 18 O -0.54 -11.13 16.12 5.29 0.09 -11.04 16 19 C -0.03 -0.50 6.90 -82.74 -0.57 -1.07 16 20 N -0.21 -3.36 8.56 33.43 0.29 -3.08 16 21 N -0.37 -4.37 6.86 30.63 0.21 -4.16 16 22 H 0.46 3.94 8.96 -190.43 -1.71 2.24 16 23 C -0.04 -0.42 12.06 -16.79 -0.20 -0.62 16 24 C 0.03 0.47 8.03 -39.27 -0.32 0.16 16 25 F -0.10 -1.65 17.05 2.25 0.04 -1.61 16 26 C 0.06 1.15 5.69 -3.56 -0.02 1.13 16 27 H 0.02 0.50 7.74 -51.93 -0.40 0.09 16 28 H 0.05 1.24 7.23 -51.93 -0.38 0.87 16 29 H 0.00 -0.07 6.48 -51.93 -0.34 -0.40 16 30 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.00 6.75 -51.93 -0.35 0.65 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.31 7.03 -51.93 -0.37 0.95 16 37 H 0.20 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.14 2.79 3.72 -115.69 -0.43 2.36 16 39 H 0.06 1.18 7.51 -51.93 -0.39 0.79 16 LS Contribution 319.76 15.07 4.82 4.82 Total: -1.00 -31.89 319.76 -7.86 -39.75 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.43 Total: 0.30 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -1.47 Total: 8.76 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.11 Total: -56.84 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.89 -7.86 -39.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027565663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.884 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds