Wall clock time and date at job start Tue Mar 31 2020 03:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.70392 * 2 1 4 4 C 1.53192 * 109.58322 * 120.35232 * 2 1 3 5 5 C 1.53039 * 109.31013 * 174.41969 * 4 2 1 6 6 H 1.09003 * 109.46107 * 58.64357 * 5 4 2 7 7 N 1.46503 * 109.45984 * 178.61427 * 5 4 2 8 8 C 1.36935 * 120.00058 * 204.99978 * 7 5 4 9 9 H 1.07999 * 119.99963 * 359.72649 * 8 7 5 10 10 C 1.38813 * 120.00171 * 179.72836 * 8 7 5 11 11 N 1.31624 * 119.99850 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00203 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47272 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47083 * 119.99810 * 12 10 8 15 15 H 1.48493 * 109.47306 * 239.99737 * 12 10 8 16 16 C 1.53044 * 109.53853 * 298.63696 * 5 4 2 17 17 C 1.53183 * 109.31524 * 61.36615 * 16 5 4 18 18 N 1.46923 * 109.58619 * 239.64230 * 2 1 3 19 19 C 1.34777 * 120.62780 * 6.62424 * 18 2 1 20 20 O 1.21572 * 120.00520 * 6.41953 * 19 18 2 21 21 C 1.47624 * 119.99630 * 186.41202 * 19 18 2 22 22 N 1.31865 * 126.46190 * 6.03592 * 21 19 18 23 23 N 1.28470 * 110.15767 * 179.85712 * 22 21 19 24 24 H 0.96995 * 124.93744 * 180.17098 * 23 22 21 25 25 C 1.35730 * 110.12877 * 0.41429 * 23 22 21 26 26 C 1.35544 * 107.12063 * 359.74981 * 25 23 22 27 27 F 1.35098 * 127.24369 * 179.97438 * 26 25 23 28 28 H 1.08999 * 109.46620 * 293.80571 * 1 2 3 29 29 H 1.08999 * 109.46810 * 53.80142 * 1 2 3 30 30 H 1.08992 * 109.47441 * 173.80097 * 1 2 3 31 31 H 1.09007 * 109.49549 * 54.47268 * 4 2 1 32 32 H 1.08995 * 109.52864 * 294.38729 * 4 2 1 33 33 H 0.97003 * 119.99965 * 24.72886 * 7 5 4 34 34 H 0.96994 * 120.00054 * 180.02562 * 11 10 8 35 35 H 1.08999 * 109.49400 * 181.32055 * 16 5 4 36 36 H 1.09003 * 109.49243 * 301.41056 * 16 5 4 37 37 H 1.08994 * 109.59124 * 185.57999 * 17 16 5 38 38 H 1.08995 * 109.70709 * 65.21841 * 17 16 5 39 39 H 1.08006 * 126.43815 * 179.72015 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5675 -0.8480 1.1702 6 1 4.0062 0.1473 1.0991 7 7 4.0652 -1.5157 2.3755 8 6 5.3496 -1.2987 2.7975 9 1 5.9972 -0.6388 2.2394 10 6 5.8195 -1.9270 3.9427 11 7 5.0301 -2.7309 4.6232 12 14 7.5719 -1.6316 4.5180 13 1 8.2477 -0.6942 3.5854 14 1 7.5528 -1.0454 5.8823 15 1 8.3084 -2.9207 4.5435 16 6 3.9569 -1.6658 -0.0634 17 6 3.4651 -0.9471 -1.3237 18 7 2.0226 -0.6996 -1.1944 19 6 1.1674 -1.1063 -2.1535 20 8 -0.0061 -0.7945 -2.0936 21 6 1.6559 -1.9302 -3.2768 22 7 2.8677 -2.4324 -3.4114 23 7 2.9508 -3.1010 -4.5052 24 1 3.7456 -3.5628 -4.8150 25 6 1.7665 -3.0630 -5.1671 26 6 0.9130 -2.3251 -4.4158 27 9 -0.3750 -2.0284 -4.6953 28 1 -0.3632 0.4148 0.9402 29 1 -0.3633 0.6069 -0.8293 30 1 -0.3634 -1.0216 -0.1110 31 1 1.6029 -1.7253 1.2914 32 1 1.7660 -0.1673 2.1372 33 1 3.4835 -2.1085 2.8768 34 1 5.3582 -3.1696 5.4237 35 1 5.0411 -1.7697 -0.1035 36 1 3.4982 -2.6529 -0.0050 37 1 3.6518 -1.5719 -2.1970 38 1 3.9901 0.0017 -1.4342 39 1 1.5457 -3.5321 -6.1146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044729194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:00 Heat of formation + Delta-G solvation = 36.520242 kcal Electronic energy + Delta-G solvation = -24394.713961 eV Core-core repulsion = 20676.092121 eV Total energy + Delta-G solvation = -3718.621841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.80181 -42.97877 -40.10517 -37.29348 -34.48550 -33.23745 -31.88620 -31.43558 -30.78381 -29.19811 -27.00612 -24.77300 -23.92437 -22.87589 -22.34502 -21.30623 -20.08518 -19.40980 -18.59030 -17.10476 -16.86197 -16.54396 -16.11940 -15.86857 -15.31342 -14.86935 -14.77835 -14.62012 -14.11883 -13.80206 -13.70701 -13.31390 -13.10703 -12.78629 -12.57341 -12.06947 -11.93519 -11.63898 -11.47863 -10.94200 -10.90502 -10.74571 -10.60852 -10.19186 -10.13344 -9.83647 -9.80140 -9.67366 -9.23817 -9.14561 -8.86466 -8.34176 -6.94478 -5.75986 -3.04676 1.19792 1.56201 2.31655 3.01559 3.27987 3.42696 3.48222 3.50609 3.89835 4.28669 4.51717 4.58581 4.68832 4.95609 5.21577 5.27953 5.40652 5.49343 5.60270 5.66098 5.77585 5.91569 5.94951 6.07534 6.14853 6.24808 6.33954 6.43014 6.50928 6.54866 6.58210 6.64249 6.81964 6.99387 7.12380 7.37076 7.60335 7.70577 8.25999 8.42468 9.53599 10.12052 10.46923 11.46799 Molecular weight = 296.14amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.003837 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.648462 B = 7295.948654 C = 8147.086216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.147 3.853 3 H 0.073 0.927 4 C -0.134 4.134 5 C 0.177 3.823 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.237 4.237 9 H 0.071 0.929 10 C -0.014 4.014 11 N -0.933 5.933 12 Si 0.905 3.095 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.143 4.143 17 C 0.076 3.924 18 N -0.585 5.585 19 C 0.596 3.404 20 O -0.524 6.524 21 C -0.021 4.021 22 N -0.227 5.227 23 N -0.374 5.374 24 H 0.455 0.545 25 C -0.036 4.036 26 C 0.035 3.965 27 F -0.101 7.101 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.127 0.873 38 H 0.061 0.939 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.681 0.394 -21.171 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.045 3.955 3 H 0.091 0.909 4 C -0.173 4.173 5 C 0.066 3.934 6 H 0.065 0.935 7 N -0.365 5.365 8 C -0.368 4.368 9 H 0.089 0.911 10 C -0.210 4.210 11 N -0.581 5.581 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.220 1.220 16 C -0.185 4.185 17 C -0.048 4.048 18 N -0.318 5.318 19 C 0.381 3.619 20 O -0.400 6.400 21 C -0.182 4.182 22 N -0.063 5.063 23 N -0.089 5.089 24 H 0.302 0.698 25 C -0.182 4.182 26 C 0.005 3.995 27 F -0.079 7.079 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.079 0.921 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.177 0.601 -20.548 21.199 hybrid contribution 0.455 -0.435 -0.065 0.633 sum -4.722 0.165 -20.613 21.148 Atomic orbital electron populations 1.22204 0.92882 1.03582 1.00932 1.21356 0.95424 0.95207 0.83539 0.90863 1.22294 0.97667 1.00960 0.96402 1.20213 0.90855 0.95012 0.87271 0.93529 1.42440 1.12784 1.54574 1.26673 1.19288 0.89074 1.22268 1.06169 0.91132 1.24739 0.98101 0.99989 0.98184 1.69676 1.35232 1.34002 1.19216 0.86143 0.84591 0.77238 0.78381 1.20574 1.21907 1.21959 1.22571 1.01450 0.99879 0.94557 1.22742 0.78449 1.01358 1.02253 1.48045 1.08070 1.56198 1.19443 1.16890 0.85359 0.79171 0.80462 1.90868 1.16568 1.56845 1.75718 1.22470 0.90892 1.06099 0.98760 1.73502 1.19473 1.09319 1.04027 1.43328 1.12456 1.38359 1.14771 0.69843 1.22674 0.87017 1.06606 1.01858 1.17150 0.81863 1.04586 0.95902 1.91536 1.31631 1.91791 1.92979 0.93457 0.90626 0.91787 0.91789 0.90521 0.78301 0.93598 0.90874 0.92374 0.85668 0.92095 0.78601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 7.61 37.16 0.28 -1.80 16 2 C 0.15 2.26 3.49 -67.60 -0.24 2.03 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 4 C -0.13 -2.32 4.84 -26.61 -0.13 -2.45 16 5 C 0.18 3.48 2.73 -67.89 -0.19 3.29 16 6 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 7 N -0.72 -18.05 5.12 -53.38 -0.27 -18.32 16 8 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 9 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 10 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 11 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 12 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 C -0.14 -2.52 5.66 -26.61 -0.15 -2.67 16 17 C 0.08 1.10 6.32 -3.71 -0.02 1.08 16 18 N -0.59 -8.99 2.97 -166.42 -0.49 -9.49 16 19 C 0.60 9.50 7.49 -12.43 -0.09 9.41 16 20 O -0.52 -9.34 12.28 5.30 0.07 -9.27 16 21 C -0.02 -0.28 6.87 -82.74 -0.57 -0.85 16 22 N -0.23 -2.55 8.62 33.43 0.29 -2.26 16 23 N -0.37 -2.59 6.86 30.64 0.21 -2.37 16 24 H 0.46 1.23 8.96 -190.44 -1.71 -0.48 16 25 C -0.04 -0.25 12.06 -16.79 -0.20 -0.46 16 26 C 0.03 0.41 8.03 -39.26 -0.32 0.09 16 27 F -0.10 -1.35 17.05 2.25 0.04 -1.31 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.18 6.57 -51.93 -0.34 0.84 16 30 H 0.06 1.06 6.92 -51.93 -0.36 0.70 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 34 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.13 1.68 3.75 -110.01 -0.41 1.26 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.20 0.53 8.06 -52.48 -0.42 0.10 16 LS Contribution 320.64 15.07 4.83 4.83 Total: -1.00 -33.86 320.64 -7.99 -41.84 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.49 Total: 6.06 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.87 Total: 0.53 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.45 Total: -59.87 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.86 -7.99 -41.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044729194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.362 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds