Wall clock time and date at job start Tue Mar 31 2020 03:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.58181 * 2 1 4 4 C 1.53190 * 109.58854 * 239.55363 * 2 1 3 5 5 C 1.53039 * 109.31106 * 185.56048 * 4 2 1 6 6 H 1.08997 * 109.46582 * 301.37736 * 5 4 2 7 7 N 1.46500 * 109.45928 * 181.40180 * 5 4 2 8 8 C 1.36940 * 120.00103 * 154.97765 * 7 5 4 9 9 H 1.08004 * 119.99851 * 359.97438 * 8 7 5 10 10 C 1.38805 * 119.99960 * 180.02562 * 8 7 5 11 11 N 1.31619 * 120.00135 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 120.00194 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46890 * 90.00257 * 12 10 8 14 14 H 1.48495 * 109.46873 * 330.00041 * 12 10 8 15 15 H 1.48494 * 109.47106 * 209.99814 * 12 10 8 16 16 C 1.53043 * 109.52633 * 61.39070 * 5 4 2 17 17 C 1.53194 * 109.31050 * 298.62790 * 16 5 4 18 18 N 1.46922 * 108.77701 * 54.63222 * 17 16 5 19 19 C 1.34777 * 120.63049 * 126.41368 * 18 17 16 20 20 O 1.21578 * 120.00122 * 174.09388 * 19 18 17 21 21 C 1.47616 * 119.99994 * 354.09768 * 19 18 17 22 22 N 1.31872 * 126.46054 * 5.95314 * 21 19 18 23 23 N 1.28467 * 110.15825 * 180.02562 * 22 21 19 24 24 H 0.96998 * 124.93629 * 179.97438 * 23 22 21 25 25 C 1.35726 * 110.13344 * 359.97438 * 23 22 21 26 26 C 1.35549 * 107.11418 * 359.72815 * 25 23 22 27 27 F 1.35099 * 127.23926 * 180.28742 * 26 25 23 28 28 H 1.09000 * 109.47503 * 305.80823 * 1 2 3 29 29 H 1.09002 * 109.46479 * 65.81312 * 1 2 3 30 30 H 1.09003 * 109.46836 * 185.80383 * 1 2 3 31 31 H 1.09003 * 109.48489 * 65.62341 * 4 2 1 32 32 H 1.08997 * 109.51210 * 305.52377 * 4 2 1 33 33 H 0.97001 * 120.00069 * 334.97635 * 7 5 4 34 34 H 0.97005 * 120.00438 * 180.02562 * 11 10 8 35 35 H 1.08997 * 109.49328 * 58.57541 * 16 5 4 36 36 H 1.08997 * 109.49704 * 178.67376 * 16 5 4 37 37 H 1.08999 * 109.58529 * 174.41904 * 17 16 5 38 38 H 1.08999 * 109.58320 * 294.84254 * 17 16 5 39 39 H 1.07998 * 126.44181 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0437 -0.7313 -1.2442 5 6 3.5676 -0.8494 -1.1689 6 1 4.0060 0.1461 -1.0992 7 7 4.0654 -1.5187 -2.3732 8 6 5.3497 -1.3016 -2.7960 9 1 5.9955 -0.6365 -2.2417 10 6 5.8212 -1.9353 -3.9374 11 7 7.0554 -1.7263 -4.3440 12 14 4.7040 -3.0850 -4.8964 13 1 3.9688 -2.3127 -5.9300 14 1 3.7334 -3.7197 -3.9689 15 1 5.5217 -4.1365 -5.5527 16 6 3.9571 -1.6655 0.0658 17 6 3.4650 -0.9451 1.3251 18 7 2.0226 -0.6979 1.1954 19 6 1.1674 -1.1034 2.1550 20 8 -0.0081 -0.7999 2.0895 21 6 1.6580 -1.9158 3.2856 22 7 2.9143 -2.2242 3.5421 23 7 2.9854 -2.9451 4.6031 24 1 3.8069 -3.2914 4.9853 25 6 1.7441 -3.1519 5.1115 26 6 0.8691 -2.5056 4.3028 27 9 -0.4737 -2.4408 4.4372 28 1 -0.3634 0.6012 0.8334 29 1 -0.3632 0.4211 -0.9375 30 1 -0.3633 -1.0224 0.1039 31 1 1.7660 -0.1700 -2.1364 32 1 1.6033 -1.7274 -1.2887 33 1 3.4853 -2.1157 -2.8712 34 1 7.3848 -2.1689 -5.1419 35 1 3.4985 -2.6527 0.0088 36 1 5.0413 -1.7693 0.1062 37 1 3.6517 -1.5688 2.1993 38 1 3.9903 0.0040 1.4318 39 1 1.4999 -3.7207 5.9965 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044729196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:03 Heat of formation + Delta-G solvation = 41.043600 kcal Electronic energy + Delta-G solvation = -24460.442928 eV Core-core repulsion = 20742.017234 eV Total energy + Delta-G solvation = -3718.425693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.83409 -43.01825 -40.17833 -37.40639 -34.64222 -33.30775 -31.92960 -31.49255 -30.83308 -29.72966 -27.16972 -24.85159 -23.90177 -22.83412 -22.25391 -21.32019 -20.15140 -19.55917 -18.64180 -17.55364 -16.85111 -16.64707 -16.15549 -15.94715 -15.31618 -14.97644 -14.80361 -14.62392 -14.17711 -14.10416 -13.65927 -13.45155 -13.06876 -12.81212 -12.54430 -12.18263 -12.13838 -11.81901 -11.70685 -11.04963 -10.99155 -10.80203 -10.72188 -10.32238 -10.10654 -9.92700 -9.84201 -9.59233 -9.27709 -9.20685 -8.89408 -8.41503 -7.26598 -5.77599 -3.12850 1.15841 1.52641 2.27619 2.94518 3.23954 3.37743 3.41372 3.45475 3.85014 4.25009 4.47825 4.59079 4.63801 4.91630 5.02918 5.17375 5.31966 5.37627 5.54098 5.59096 5.65979 5.83667 5.87238 5.95656 6.05907 6.09758 6.22650 6.33790 6.37801 6.43866 6.44911 6.58556 6.72863 6.89068 7.01174 7.33158 7.54424 7.98778 8.20372 8.41719 9.20352 9.93317 10.13554 11.40769 Molecular weight = 296.14amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.004060 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.872143 B = 6894.306505 C = 7522.319321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.148 3.852 3 H 0.076 0.924 4 C -0.138 4.138 5 C 0.181 3.819 6 H 0.057 0.943 7 N -0.749 5.749 8 C -0.242 4.242 9 H 0.091 0.909 10 C 0.005 3.995 11 N -0.935 5.935 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.278 1.278 15 H -0.292 1.292 16 C -0.146 4.146 17 C 0.073 3.927 18 N -0.586 5.586 19 C 0.596 3.404 20 O -0.525 6.525 21 C -0.020 4.020 22 N -0.229 5.229 23 N -0.374 5.374 24 H 0.456 0.544 25 C -0.035 4.035 26 C 0.035 3.965 27 F -0.101 7.101 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.131 0.869 38 H 0.065 0.935 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.356 -1.800 20.787 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.045 3.955 3 H 0.094 0.906 4 C -0.177 4.177 5 C 0.072 3.928 6 H 0.075 0.925 7 N -0.391 5.391 8 C -0.372 4.372 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.583 5.583 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.204 1.204 15 H -0.218 1.218 16 C -0.187 4.187 17 C -0.050 4.050 18 N -0.318 5.318 19 C 0.381 3.619 20 O -0.400 6.400 21 C -0.182 4.182 22 N -0.065 5.065 23 N -0.089 5.089 24 H 0.302 0.698 25 C -0.180 4.180 26 C 0.005 3.995 27 F -0.079 7.079 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.148 0.852 38 H 0.083 0.917 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.742 -1.378 20.285 22.545 hybrid contribution -1.034 -1.351 -0.271 1.723 sum -10.776 -2.730 20.014 22.894 Atomic orbital electron populations 1.22218 0.92828 1.03576 1.01020 1.21337 0.95469 0.95316 0.83371 0.90610 1.22338 0.97621 1.00934 0.96845 1.20186 0.90720 0.95439 0.86463 0.92540 1.42803 1.13164 1.54752 1.28333 1.19078 0.87728 1.23101 1.07273 0.89168 1.24655 0.96092 1.00118 0.98224 1.69700 1.15131 1.47267 1.26166 0.86568 0.80360 0.81315 0.80397 1.21058 1.20395 1.21809 1.22570 1.01927 0.99575 0.94635 1.22822 0.78329 1.01772 1.02110 1.48060 1.08154 1.56194 1.19399 1.16893 0.85366 0.79068 0.80538 1.90872 1.16435 1.56651 1.76057 1.22455 0.89300 1.06229 1.00188 1.73441 1.19935 1.10341 1.02762 1.43336 1.08901 1.37678 1.18949 0.69816 1.22683 0.84888 1.07136 1.03329 1.17139 0.79410 1.05092 0.97845 1.91538 1.26142 1.95017 1.95224 0.90477 0.93493 0.91817 0.90414 0.91898 0.80697 0.93091 0.92611 0.90340 0.85244 0.91659 0.78570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 7.61 37.16 0.28 -1.70 16 2 C 0.15 2.16 3.49 -67.60 -0.24 1.92 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.14 -2.24 4.84 -26.61 -0.13 -2.37 16 5 C 0.18 3.42 2.73 -67.89 -0.19 3.23 16 6 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 7 N -0.75 -17.51 4.92 -53.39 -0.26 -17.77 16 8 C -0.24 -6.71 10.41 -15.06 -0.16 -6.86 16 9 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 10 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 11 N -0.93 -29.14 13.97 55.49 0.78 -28.36 16 12 Si 0.88 22.14 27.74 -169.99 -4.71 17.43 16 13 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 16 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 17 C 0.07 1.03 6.33 -3.71 -0.02 1.01 16 18 N -0.59 -8.65 2.97 -166.41 -0.49 -9.14 16 19 C 0.60 9.18 7.50 -12.43 -0.09 9.09 16 20 O -0.52 -9.05 12.25 5.30 0.06 -8.99 16 21 C -0.02 -0.27 6.90 -82.74 -0.57 -0.84 16 22 N -0.23 -2.45 8.55 33.43 0.29 -2.17 16 23 N -0.37 -2.45 6.86 30.64 0.21 -2.24 16 24 H 0.46 1.07 8.96 -190.44 -1.71 -0.64 16 25 C -0.03 -0.24 12.06 -16.79 -0.20 -0.44 16 26 C 0.03 0.40 8.03 -39.26 -0.32 0.09 16 27 F -0.10 -1.32 17.05 2.25 0.04 -1.29 16 28 H 0.08 1.16 6.55 -51.93 -0.34 0.82 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.00 6.94 -51.93 -0.36 0.64 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.36 8.42 5.66 -40.82 -0.23 8.18 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.13 1.68 3.68 -119.77 -0.44 1.24 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.20 0.48 8.06 -52.49 -0.42 0.06 16 LS Contribution 317.42 15.07 4.78 4.78 Total: -1.00 -34.64 317.42 -7.66 -42.30 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.47 Total: 4.90 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.88 Total: 0.54 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.51 Total: -59.68 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.06 Total: -8.99 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.64 -7.66 -42.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044729196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.347 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds