Wall clock time and date at job start Tue Mar 31 2020 03:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34774 * 120.00243 * 2 1 4 4 O 1.21275 * 120.00152 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99897 * 359.97438 * 3 2 1 6 6 N 1.46494 * 109.47278 * 180.02562 * 5 3 2 7 7 N 1.28885 * 125.44987 * 269.71811 * 6 5 3 8 8 C 1.31045 * 107.91782 * 179.89510 * 7 6 5 9 9 N 1.33319 * 106.89760 * 0.35898 * 8 7 6 10 10 N 1.28789 * 125.45200 * 90.02413 * 6 5 3 11 11 C 1.46500 * 119.99783 * 179.97438 * 2 1 3 12 12 H 1.08999 * 110.91648 * 177.55285 * 11 2 1 13 13 C 1.54910 * 111.00500 * 301.45601 * 11 2 1 14 14 N 1.47426 * 104.83209 * 155.08471 * 13 11 2 15 15 C 1.36932 * 125.64638 * 155.89300 * 14 13 11 16 16 H 1.08002 * 120.00173 * 0.02562 * 15 14 13 17 17 C 1.38818 * 119.99942 * 180.02562 * 15 14 13 18 18 N 1.31615 * 119.99835 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99957 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47201 * 89.99832 * 19 17 15 21 21 H 1.48504 * 109.46988 * 209.99240 * 19 17 15 22 22 H 1.48494 * 109.47504 * 329.99666 * 19 17 15 23 23 C 1.47019 * 108.70209 * 335.87354 * 14 13 11 24 24 C 1.54322 * 107.27223 * 1.05519 * 23 14 13 25 25 H 1.08995 * 110.72403 * 263.65428 * 24 23 14 26 26 O 1.42903 * 110.71746 * 140.55776 * 24 23 14 27 27 H 1.08995 * 109.47189 * 270.00562 * 1 2 3 28 28 H 1.09004 * 109.46336 * 30.00489 * 1 2 3 29 29 H 1.08998 * 109.46965 * 150.00529 * 1 2 3 30 30 H 1.09004 * 109.47091 * 300.00636 * 5 3 2 31 31 H 1.08997 * 109.47077 * 60.00487 * 5 3 2 32 32 H 1.07997 * 126.54869 * 180.13835 * 8 7 6 33 33 H 1.08998 * 110.36709 * 36.24572 * 13 11 2 34 34 H 1.09005 * 110.36466 * 273.92106 * 13 11 2 35 35 H 0.97001 * 119.99871 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.88389 * 120.48020 * 23 14 13 37 37 H 1.09003 * 109.87977 * 241.64361 * 23 14 13 38 38 H 0.96702 * 113.99961 * 61.45491 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 7 2.3375 3.5858 -0.0011 7 7 2.8193 4.1578 1.0486 8 6 3.6345 5.1046 0.6534 9 7 3.6249 5.0929 -0.6797 10 7 2.8225 4.1534 -1.0505 11 6 2.1975 -1.2688 0.0006 12 1 3.2730 -1.0972 -0.0430 13 6 1.8216 -2.1264 1.2346 14 7 2.0991 -3.5158 0.8272 15 6 2.3686 -4.5572 1.6746 16 1 2.3898 -4.3933 2.7419 17 6 2.6145 -5.8235 1.1618 18 7 2.5881 -6.0233 -0.1389 19 14 2.9814 -7.2442 2.3177 20 1 1.7118 -7.9152 2.6959 21 1 3.8725 -8.2183 1.6376 22 1 3.6516 -6.7288 3.5385 23 6 2.0381 -3.5982 -0.6394 24 6 1.7321 -2.1801 -1.1656 25 1 0.6648 -2.0594 -1.3507 26 8 2.4828 -1.9078 -2.3507 27 1 -0.3633 0.0001 1.0276 28 1 -0.3632 0.8900 -0.5140 29 1 -0.3633 -0.8900 -0.5137 30 1 0.7591 2.5298 -0.8908 31 1 0.7586 2.5303 0.8892 32 1 4.2026 5.7699 1.2867 33 1 0.7650 -2.0049 1.4733 34 1 2.4388 -1.8514 2.0899 35 1 2.7596 -6.9082 -0.4972 36 1 2.9957 -3.9406 -1.0316 37 1 1.2457 -4.2839 -0.9395 38 1 2.2845 -2.5022 -3.0872 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047380752.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:37 Heat of formation + Delta-G solvation = 98.836640 kcal Electronic energy + Delta-G solvation = -24253.782670 eV Core-core repulsion = 20557.783033 eV Total energy + Delta-G solvation = -3695.999637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.43749 -40.27181 -38.10773 -35.44107 -35.10570 -34.94663 -33.19189 -32.06156 -29.91313 -28.39327 -27.58435 -26.70694 -24.61083 -24.07462 -23.33889 -21.01707 -20.54887 -19.29730 -18.31261 -17.82220 -17.15564 -17.00284 -16.30030 -16.11586 -15.81834 -15.33701 -14.70341 -14.16038 -14.03700 -13.95262 -13.59758 -13.23012 -12.93617 -12.76952 -12.64720 -12.39433 -12.10362 -12.06804 -11.53129 -11.33504 -11.26115 -11.09380 -10.96634 -10.85694 -10.74847 -10.23032 -10.09452 -9.95040 -9.88198 -9.39160 -8.84218 -8.60604 -7.01926 -5.84742 -3.20382 1.04789 1.60208 2.14594 2.28832 2.79251 3.33517 3.39218 3.41135 3.88079 3.97788 4.22413 4.37777 4.40374 4.56345 4.70197 4.84867 5.07507 5.18542 5.36586 5.40778 5.48636 5.56397 5.59231 5.61481 5.76437 5.84726 5.92807 5.96466 6.31864 6.41963 6.64834 7.18350 7.24639 7.37945 7.64438 7.87740 8.07934 8.08662 8.23734 9.05541 9.65682 10.27567 11.26732 Molecular weight = 296.14amu Principal moments of inertia in cm(-1) A = 0.029861 B = 0.003405 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.437582 B = 8221.515351 C = 8504.321630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.591 5.591 3 C 0.505 3.495 4 O -0.517 6.517 5 C 0.112 3.888 6 N -0.125 5.125 7 N -0.301 5.301 8 C 0.144 3.856 9 N -0.287 5.287 10 N -0.049 5.049 11 C 0.133 3.867 12 H 0.116 0.884 13 C 0.133 3.867 14 N -0.598 5.598 15 C -0.233 4.233 16 H 0.081 0.919 17 C -0.005 4.005 18 N -0.922 5.922 19 Si 0.916 3.084 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.152 3.848 24 C 0.065 3.935 25 H 0.059 0.941 26 O -0.562 6.562 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.236 0.764 33 H 0.027 0.973 34 H 0.049 0.951 35 H 0.254 0.746 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.988 16.550 -0.617 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.324 5.324 3 C 0.289 3.711 4 O -0.392 6.392 5 C -0.013 4.013 6 N -0.037 5.037 7 N -0.151 5.151 8 C -0.160 4.160 9 N -0.158 5.158 10 N -0.043 5.043 11 C 0.030 3.970 12 H 0.134 0.866 13 C 0.006 3.994 14 N -0.326 5.326 15 C -0.361 4.361 16 H 0.099 0.901 17 C -0.202 4.202 18 N -0.569 5.569 19 Si 0.746 3.254 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.026 3.974 24 C 0.004 3.996 25 H 0.077 0.923 26 O -0.367 6.367 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.252 0.748 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.278 16.500 -0.804 18.052 hybrid contribution 0.035 -1.146 0.722 1.355 sum -7.242 15.354 -0.082 16.976 Atomic orbital electron populations 1.21990 0.79288 1.03813 1.02756 1.47648 1.07084 1.05482 1.72185 1.20093 0.88258 0.84807 0.77984 1.90822 1.13303 1.86535 1.48506 1.22103 0.89018 0.81258 1.08878 1.49525 1.29642 1.23393 1.01106 1.74706 1.14202 1.10488 1.15681 1.27337 0.99078 0.98098 0.91444 1.75871 1.14370 1.13657 1.11894 1.79004 1.07231 1.03981 1.14048 1.22519 0.98423 0.80448 0.95625 0.86593 1.21764 0.97973 0.85628 0.94075 1.44229 1.83430 1.02994 1.01968 1.19070 1.41665 0.86436 0.88952 0.90079 1.24830 1.01476 0.97653 0.96196 1.69918 1.55306 1.21713 1.09957 0.86057 0.77797 0.81959 0.79566 1.21474 1.21547 1.20548 1.21874 1.01868 0.89403 0.84220 1.23576 0.93533 0.97477 0.84972 0.92331 1.86494 1.67330 1.59680 1.23168 0.91411 0.91158 0.89635 0.83634 0.83674 0.74809 0.95545 0.93264 0.93535 0.92080 0.93218 0.77678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 9.13 59.85 0.55 1.09 16 2 N -0.59 -7.93 2.91 -171.48 -0.50 -8.43 16 3 C 0.50 7.15 7.74 -10.98 -0.09 7.07 16 4 O -0.52 -10.11 15.81 5.56 0.09 -10.02 16 5 C 0.11 1.04 5.64 -5.20 -0.03 1.01 16 6 N -0.13 -1.60 3.49 -11.72 -0.04 -1.64 16 7 N -0.30 -3.85 12.13 29.34 0.36 -3.49 16 8 C 0.14 1.62 13.26 -91.58 -1.21 0.41 16 9 N -0.29 -3.99 12.50 29.33 0.37 -3.62 16 10 N -0.05 -0.70 13.25 60.35 0.80 0.10 16 11 C 0.13 2.39 3.18 -65.78 -0.21 2.19 16 12 H 0.12 2.51 7.02 -51.93 -0.36 2.14 16 13 C 0.13 2.60 6.83 -2.53 -0.02 2.58 16 14 N -0.60 -14.61 3.39 -170.07 -0.58 -15.19 16 15 C -0.23 -6.28 10.28 -15.06 -0.15 -6.44 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 18 N -0.92 -26.07 10.31 55.49 0.57 -25.49 16 19 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.15 3.47 5.14 -3.07 -0.02 3.46 16 24 C 0.06 1.15 3.87 -24.90 -0.10 1.06 16 25 H 0.06 0.90 6.03 -51.93 -0.31 0.59 16 26 O -0.56 -9.92 13.39 -35.23 -0.47 -10.39 16 27 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.07 0.33 6.44 -51.93 -0.33 -0.01 16 29 H 0.09 0.78 6.02 -51.93 -0.31 0.47 16 30 H 0.15 0.84 7.40 -51.93 -0.38 0.45 16 31 H 0.15 0.82 8.11 -51.93 -0.42 0.40 16 32 H 0.24 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.03 0.47 7.22 -51.93 -0.37 0.10 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.06 1.60 7.29 -51.93 -0.38 1.22 16 37 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 38 H 0.38 5.10 9.11 45.56 0.42 5.52 16 LS Contribution 321.18 15.07 4.84 4.84 Total: -1.00 -37.13 321.18 -4.63 -41.76 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -3.67 Total: 2.91 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -1.37 Total: 12.18 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.98 Total: -57.77 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.38 Total: -20.41 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -37.13 -4.63 -41.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047380752.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.595 kcal (2) G-P(sol) polarization free energy of solvation -37.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds