Wall clock time and date at job start Tue Mar 31 2020 04:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 119.99857 * 2 1 4 4 H 1.48507 * 109.47261 * 274.99236 * 3 2 1 5 5 H 1.48492 * 109.47372 * 34.99477 * 3 2 1 6 6 H 1.48504 * 109.47407 * 154.99604 * 3 2 1 7 7 C 1.38818 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99854 * 171.30005 * 7 2 1 9 9 N 1.36939 * 119.99500 * 351.29739 * 7 2 1 10 10 C 1.47717 * 125.01619 * 359.16648 * 9 7 2 11 11 C 1.53983 * 106.19270 * 197.99291 * 10 9 7 12 12 H 1.09001 * 112.80574 * 209.95878 * 11 10 9 13 13 C 1.53672 * 109.29685 * 83.64728 * 11 10 9 14 14 N 1.46660 * 107.97645 * 232.33996 * 13 11 10 15 15 C 1.34765 * 125.33565 * 179.31128 * 14 13 11 16 16 O 1.21282 * 120.00327 * 355.49741 * 15 14 13 17 17 C 1.50702 * 120.00186 * 175.49845 * 15 14 13 18 18 H 1.09012 * 109.52166 * 315.90236 * 17 15 14 19 19 C 1.53143 * 109.52659 * 76.09425 * 17 15 14 20 20 O 1.43075 * 109.15043 * 175.21800 * 19 17 15 21 21 C 1.43071 * 113.59338 * 302.04788 * 20 19 17 22 22 C 1.53142 * 109.15291 * 57.95607 * 21 20 19 23 23 O 1.43075 * 109.53037 * 195.77140 * 17 15 14 24 24 C 1.46754 * 109.32566 * 359.29345 * 14 13 11 25 25 C 1.53980 * 106.68121 * 18.44851 * 24 14 13 26 26 H 1.08998 * 112.25284 * 209.66209 * 25 24 14 27 27 C 1.46658 * 125.33054 * 179.91545 * 9 7 2 28 28 H 0.96998 * 120.00691 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.75891 * 79.10953 * 10 9 7 30 30 H 1.08998 * 110.75038 * 317.41235 * 10 9 7 31 31 H 1.08999 * 109.76790 * 351.97207 * 13 11 10 32 32 H 1.09006 * 109.76626 * 112.69427 * 13 11 10 33 33 H 1.09001 * 109.52331 * 295.12410 * 19 17 15 34 34 H 1.09000 * 109.52258 * 55.31315 * 19 17 15 35 35 H 1.09002 * 109.52374 * 298.05253 * 21 20 19 36 36 H 1.09004 * 109.57769 * 177.89214 * 21 20 19 37 37 H 1.08998 * 109.52573 * 184.78745 * 22 21 20 38 38 H 1.09003 * 109.57609 * 64.61523 * 22 21 20 39 39 H 1.09009 * 110.01650 * 137.75091 * 24 14 13 40 40 H 1.08994 * 110.02046 * 259.14114 * 24 14 13 41 41 H 1.09006 * 109.76535 * 59.66838 * 27 9 7 42 42 H 1.08996 * 109.77122 * 298.93080 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4121 0.5918 7 6 2.0103 -1.2022 -0.0005 8 1 3.0810 -1.2074 -0.1420 9 7 1.3374 -2.3813 0.1784 10 6 -0.1183 -2.5016 0.3983 11 6 -0.3487 -3.9040 0.9909 12 1 -1.3219 -4.3189 0.7285 13 6 -0.1104 -3.8595 2.5084 14 7 0.8438 -4.9202 2.8480 15 6 1.3080 -5.1841 4.0854 16 8 1.0001 -4.4676 5.0142 17 6 2.2098 -6.3694 4.3150 18 1 1.8176 -7.2346 3.7801 19 6 3.6181 -6.0472 3.8069 20 8 4.4930 -7.1325 4.1289 21 6 4.5540 -7.4230 5.5285 22 6 3.1458 -7.7453 6.0366 23 8 2.2709 -6.6600 5.7146 24 6 1.2134 -5.6494 1.6293 25 6 0.8377 -4.7444 0.4416 26 1 0.5774 -5.3178 -0.4481 27 6 1.9506 -3.7134 0.1967 28 1 -0.4851 0.8400 0.0004 29 1 -0.6436 -2.4072 -0.5521 30 1 -0.4678 -1.7400 1.0954 31 1 0.3010 -2.8899 2.7887 32 1 -1.0505 -4.0268 3.0342 33 1 3.5925 -5.9082 2.7261 34 1 3.9777 -5.1355 4.2839 35 1 4.9451 -6.5576 6.0634 36 1 5.2066 -8.2800 5.6955 37 1 3.1713 -7.8843 7.1174 38 1 2.7855 -8.6572 5.5603 39 1 2.2855 -5.8469 1.6233 40 1 0.6606 -6.5871 1.5734 41 1 2.6875 -3.7690 0.9980 42 1 2.4320 -3.9109 -0.7611 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048694321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:57 Heat of formation + Delta-G solvation = -79.261567 kcal Electronic energy + Delta-G solvation = -25326.072960 eV Core-core repulsion = 21693.597998 eV Total energy + Delta-G solvation = -3632.474963 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.77175 -39.64115 -37.99898 -36.19677 -34.96782 -32.55066 -31.84507 -30.21041 -29.70913 -28.34908 -25.85777 -25.52799 -24.87452 -23.04869 -21.77804 -20.14067 -19.58395 -19.43903 -17.59442 -17.11794 -16.80603 -16.66567 -16.14098 -15.89088 -15.46374 -15.22317 -14.73098 -14.27824 -13.86622 -13.71985 -13.62223 -13.28984 -12.92256 -12.77138 -12.29533 -12.11619 -12.03171 -11.80440 -11.68352 -11.39552 -11.07809 -10.95424 -10.84297 -10.80504 -10.41718 -10.12736 -10.03706 -9.97021 -9.68909 -9.65949 -9.41029 -8.61572 -8.40392 -6.87072 -5.75503 -3.07678 2.56692 2.71016 3.39461 3.42338 3.45992 3.47666 3.74449 4.27674 4.40583 4.46299 4.63787 4.66105 4.72873 4.82298 4.87245 5.00807 5.12757 5.19997 5.31029 5.40139 5.41993 5.48038 5.48857 5.62389 5.70310 5.74362 5.87282 6.07530 6.25137 6.33259 6.43599 6.59663 6.63768 6.67402 6.72552 6.76264 7.42328 7.56335 7.63515 7.77036 8.23207 8.24668 9.17655 9.79527 10.42468 11.35731 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.004189 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.623828 B = 6682.091833 C = 7029.890925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.180 3.820 11 C -0.124 4.124 12 H 0.089 0.911 13 C 0.122 3.878 14 N -0.605 5.605 15 C 0.534 3.466 16 O -0.518 6.518 17 C 0.045 3.955 18 H 0.090 0.910 19 C 0.035 3.965 20 O -0.372 6.372 21 C 0.020 3.980 22 C 0.024 3.976 23 O -0.352 6.352 24 C 0.102 3.898 25 C -0.107 4.107 26 H 0.099 0.901 27 C 0.147 3.853 28 H 0.253 0.747 29 H 0.029 0.971 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.021 0.979 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 -17.820 6.315 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.055 3.945 11 C -0.144 4.144 12 H 0.107 0.893 13 C 0.001 3.999 14 N -0.340 5.340 15 C 0.320 3.680 16 O -0.393 6.393 17 C -0.017 4.017 18 H 0.108 0.892 19 C -0.042 4.042 20 O -0.291 6.291 21 C -0.057 4.057 22 C -0.053 4.053 23 O -0.270 6.270 24 C -0.021 4.021 25 C -0.126 4.126 26 H 0.117 0.883 27 C 0.021 3.979 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.890 -17.211 6.903 18.948 hybrid contribution 0.452 0.748 -0.058 0.876 sum 4.342 -16.464 6.845 18.351 Atomic orbital electron populations 1.69919 1.04901 1.25138 1.56835 1.24755 0.95666 0.97685 1.02108 0.86132 0.78782 0.83605 0.77452 1.21662 1.21570 1.20660 1.19028 0.91326 0.82686 1.42622 0.90506 1.44420 1.03256 1.00295 1.84908 1.21454 0.84848 0.89598 0.98609 1.23224 0.97571 1.00435 0.93151 0.89266 1.21932 0.91355 0.91195 0.95421 1.48153 1.45195 1.34582 1.06038 1.19417 0.81128 0.85538 0.81897 1.90733 1.58058 1.49089 1.41380 1.22524 0.96397 0.97722 0.85050 0.89203 1.23227 0.87799 0.90556 1.02648 1.88118 1.64900 1.52440 1.23636 1.23312 0.97331 1.02304 0.82779 1.23334 0.89914 0.89873 1.02203 1.88224 1.65191 1.52448 1.21128 1.22200 1.00186 0.95166 0.84531 1.22827 0.97230 0.96094 0.96487 0.88310 1.21072 0.93298 0.85683 0.97841 0.93654 0.95344 0.89920 0.90068 0.92168 0.86643 0.91057 0.91749 0.87487 0.87257 0.91924 0.90881 0.91555 0.96107 0.95817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.41 10.31 55.49 0.57 -25.84 16 2 C -0.01 -0.17 5.45 -17.43 -0.10 -0.26 16 3 Si 0.91 22.05 29.56 -169.99 -5.03 17.02 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.25 10.24 -15.06 -0.15 -6.41 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.60 -14.75 3.40 -171.10 -0.58 -15.33 16 10 C 0.18 4.10 4.73 -2.86 -0.01 4.09 16 11 C -0.12 -2.12 4.04 -88.47 -0.36 -2.48 16 12 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 13 C 0.12 2.19 6.26 -3.61 -0.02 2.16 16 14 N -0.60 -9.63 3.31 -172.34 -0.57 -10.20 16 15 C 0.53 9.08 7.13 -10.99 -0.08 9.00 16 16 O -0.52 -11.05 16.89 -13.79 -0.23 -11.28 16 17 C 0.04 0.60 2.62 -27.81 -0.07 0.52 16 18 H 0.09 1.00 7.89 -51.92 -0.41 0.59 16 19 C 0.03 0.43 6.20 37.23 0.23 0.66 16 20 O -0.37 -4.31 10.85 -48.81 -0.53 -4.84 16 21 C 0.02 0.18 7.05 37.23 0.26 0.44 16 22 C 0.02 0.22 7.05 37.23 0.26 0.48 16 23 O -0.35 -4.95 10.08 -62.28 -0.63 -5.58 16 24 C 0.10 1.30 5.58 -3.39 -0.02 1.28 16 25 C -0.11 -1.62 4.05 -88.47 -0.36 -1.97 16 26 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 27 C 0.15 2.85 6.67 -3.60 -0.02 2.82 16 28 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16 30 H 0.08 2.15 6.23 -51.93 -0.32 1.82 16 31 H 0.08 1.76 7.47 -51.93 -0.39 1.37 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.12 1.29 5.70 -51.93 -0.30 1.00 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.82 5.16 -51.92 -0.27 0.56 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.02 0.41 7.52 -51.93 -0.39 0.02 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -33.55 328.42 -8.75 -42.30 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.27 Total: -1.54 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -0.44 Total: 10.34 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.58 Total: -51.36 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -1.39 Total: -21.71 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.55 -8.75 -42.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048694321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.960 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds