Wall clock time and date at job start Tue Mar 31 2020 04:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 119.99857 * 2 1 4 4 H 1.48507 * 109.47261 * 274.99236 * 3 2 1 5 5 H 1.48492 * 109.47372 * 34.99477 * 3 2 1 6 6 H 1.48504 * 109.47407 * 154.99604 * 3 2 1 7 7 C 1.38818 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99854 * 171.30005 * 7 2 1 9 9 N 1.36939 * 119.99500 * 351.29739 * 7 2 1 10 10 C 1.47717 * 125.01619 * 359.16648 * 9 7 2 11 11 C 1.53983 * 106.19270 * 197.99291 * 10 9 7 12 12 H 1.09001 * 112.80574 * 209.95878 * 11 10 9 13 13 C 1.53672 * 109.29685 * 83.64728 * 11 10 9 14 14 N 1.46660 * 107.97645 * 232.33996 * 13 11 10 15 15 C 1.34765 * 125.33565 * 179.31128 * 14 13 11 16 16 O 1.21282 * 120.00327 * 355.49741 * 15 14 13 17 17 C 1.50702 * 120.00186 * 175.49845 * 15 14 13 18 18 H 1.09012 * 109.52166 * 315.90236 * 17 15 14 19 19 C 1.53143 * 109.52659 * 76.09425 * 17 15 14 20 20 O 1.43075 * 109.15043 * 175.21800 * 19 17 15 21 21 C 1.43071 * 113.59338 * 302.04788 * 20 19 17 22 22 C 1.53142 * 109.15291 * 57.95607 * 21 20 19 23 23 O 1.43075 * 109.53037 * 195.77140 * 17 15 14 24 24 C 1.46754 * 109.32566 * 359.29345 * 14 13 11 25 25 C 1.53980 * 106.68121 * 18.44851 * 24 14 13 26 26 H 1.08998 * 112.25284 * 209.66209 * 25 24 14 27 27 C 1.46658 * 125.33054 * 179.91545 * 9 7 2 28 28 H 0.96998 * 120.00691 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.75891 * 79.10953 * 10 9 7 30 30 H 1.08998 * 110.75038 * 317.41235 * 10 9 7 31 31 H 1.08999 * 109.76790 * 351.97207 * 13 11 10 32 32 H 1.09006 * 109.76626 * 112.69427 * 13 11 10 33 33 H 1.09001 * 109.52331 * 295.12410 * 19 17 15 34 34 H 1.09000 * 109.52258 * 55.31315 * 19 17 15 35 35 H 1.09002 * 109.52374 * 298.05253 * 21 20 19 36 36 H 1.09004 * 109.57769 * 177.89214 * 21 20 19 37 37 H 1.08998 * 109.52573 * 184.78745 * 22 21 20 38 38 H 1.09003 * 109.57609 * 64.61523 * 22 21 20 39 39 H 1.09009 * 110.01650 * 137.75091 * 24 14 13 40 40 H 1.08994 * 110.02046 * 259.14114 * 24 14 13 41 41 H 1.09006 * 109.76535 * 59.66838 * 27 9 7 42 42 H 1.08996 * 109.77122 * 298.93080 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4121 0.5918 7 6 2.0103 -1.2022 -0.0005 8 1 3.0810 -1.2074 -0.1420 9 7 1.3374 -2.3813 0.1784 10 6 -0.1183 -2.5016 0.3983 11 6 -0.3487 -3.9040 0.9909 12 1 -1.3219 -4.3189 0.7285 13 6 -0.1104 -3.8595 2.5084 14 7 0.8438 -4.9202 2.8480 15 6 1.3080 -5.1841 4.0854 16 8 1.0001 -4.4676 5.0142 17 6 2.2098 -6.3694 4.3150 18 1 1.8176 -7.2346 3.7801 19 6 3.6181 -6.0472 3.8069 20 8 4.4930 -7.1325 4.1289 21 6 4.5540 -7.4230 5.5285 22 6 3.1458 -7.7453 6.0366 23 8 2.2709 -6.6600 5.7146 24 6 1.2134 -5.6494 1.6293 25 6 0.8377 -4.7444 0.4416 26 1 0.5774 -5.3178 -0.4481 27 6 1.9506 -3.7134 0.1967 28 1 -0.4851 0.8400 0.0004 29 1 -0.6436 -2.4072 -0.5521 30 1 -0.4678 -1.7400 1.0954 31 1 0.3010 -2.8899 2.7887 32 1 -1.0505 -4.0268 3.0342 33 1 3.5925 -5.9082 2.7261 34 1 3.9777 -5.1355 4.2839 35 1 4.9451 -6.5576 6.0634 36 1 5.2066 -8.2800 5.6955 37 1 3.1713 -7.8843 7.1174 38 1 2.7855 -8.6572 5.5603 39 1 2.2855 -5.8469 1.6233 40 1 0.6606 -6.5871 1.5734 41 1 2.6875 -3.7690 0.9980 42 1 2.4320 -3.9109 -0.7611 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048694321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:52 Heat of formation + Delta-G solvation = -103.184470 kcal Electronic energy + Delta-G solvation = -25327.110335 eV Core-core repulsion = 21693.597998 eV Total energy + Delta-G solvation = -3633.512338 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.93243 -40.76653 -39.36917 -37.13625 -36.58641 -34.20914 -33.04554 -31.58233 -31.30823 -29.32709 -27.42327 -27.00902 -26.06494 -24.45420 -22.71376 -21.80852 -20.87655 -20.76574 -19.02951 -18.43391 -18.03145 -17.71763 -17.17837 -16.95585 -16.73148 -16.48189 -16.37973 -15.62415 -15.46169 -14.99630 -14.59064 -14.48321 -14.30822 -14.13546 -13.70336 -13.59484 -13.32280 -13.19145 -13.04084 -12.79830 -12.74176 -12.65531 -12.03358 -11.95418 -11.87689 -11.73142 -11.60294 -11.52817 -11.43703 -10.93467 -10.66285 -10.33025 -9.72107 -8.86392 -7.86789 -5.19069 1.32161 1.43090 1.45482 1.53725 1.55967 2.48011 2.59378 2.78819 3.28140 3.32759 3.40066 3.40731 3.65611 3.75447 3.81193 3.93465 3.95402 4.08891 4.21076 4.22048 4.29056 4.33044 4.46223 4.56199 4.65925 4.76630 4.78333 4.81103 4.85329 4.92612 5.05166 5.11666 5.21284 5.36232 5.48662 5.59482 5.79343 5.81868 5.85242 6.22792 6.39534 6.96078 7.10467 7.79887 8.41056 9.22758 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.004189 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.623828 B = 6682.091833 C = 7029.890925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.969 3.031 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.625 5.625 10 C 0.185 3.815 11 C -0.108 4.108 12 H 0.125 0.875 13 C 0.128 3.872 14 N -0.603 5.603 15 C 0.527 3.473 16 O -0.576 6.576 17 C 0.055 3.945 18 H 0.124 0.876 19 C 0.041 3.959 20 O -0.377 6.377 21 C 0.014 3.986 22 C 0.019 3.981 23 O -0.387 6.387 24 C 0.102 3.898 25 C -0.092 4.092 26 H 0.138 0.862 27 C 0.138 3.862 28 H 0.247 0.753 29 H 0.003 0.997 30 H 0.039 0.961 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.129 0.871 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.141 0.859 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.017 0.983 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.070 -21.376 5.833 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.255 4.255 3 Si 0.798 3.202 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.370 4.370 8 H 0.096 0.904 9 N -0.352 5.352 10 C 0.060 3.940 11 C -0.128 4.128 12 H 0.143 0.857 13 C 0.005 3.995 14 N -0.337 5.337 15 C 0.315 3.685 16 O -0.455 6.455 17 C -0.006 4.006 18 H 0.141 0.859 19 C -0.037 4.037 20 O -0.295 6.295 21 C -0.062 4.062 22 C -0.057 4.057 23 O -0.306 6.306 24 C -0.019 4.019 25 C -0.111 4.111 26 H 0.156 0.844 27 C 0.013 3.987 28 H 0.056 0.944 29 H 0.021 0.979 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.146 0.854 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.159 0.841 37 H 0.147 0.853 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.132 0.868 41 H 0.035 0.965 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.927 -20.828 6.391 22.336 hybrid contribution 0.204 1.837 0.127 1.853 sum 5.130 -18.991 6.518 20.723 Atomic orbital electron populations 1.70135 1.06081 1.25156 1.58140 1.25515 0.96504 1.00686 1.02805 0.85196 0.77759 0.79830 0.77389 1.21032 1.22258 1.19854 1.19380 0.91705 0.84306 1.41579 0.90450 1.44726 1.04172 1.01590 1.84680 1.21168 0.84010 0.92259 0.96534 1.23063 1.00410 0.97292 0.92052 0.85743 1.21659 0.91894 0.89759 0.96157 1.48235 1.44365 1.33995 1.07062 1.20224 0.80852 0.86049 0.81327 1.90700 1.60248 1.51259 1.43257 1.22483 0.95820 0.96734 0.85554 0.85873 1.23117 0.87431 0.90058 1.03080 1.88114 1.64482 1.51757 1.25177 1.23557 0.97936 1.03317 0.81403 1.23639 0.89149 0.89155 1.03733 1.88185 1.66556 1.54361 1.21479 1.22487 1.02333 0.95625 0.81443 1.22885 0.93964 0.95246 0.99028 0.84426 1.21340 0.94817 0.84567 0.97965 0.94400 0.97927 0.94246 0.95272 0.91401 0.85373 0.93451 0.92605 0.84145 0.85346 0.89912 0.88846 0.86828 0.96492 0.94983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.80 10.31 21.65 0.22 -56.58 16 2 C -0.06 -3.55 5.45 84.86 0.46 -3.09 16 3 Si 0.97 46.61 29.56 68.60 2.03 48.63 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.24 -13.51 10.24 84.03 0.86 -12.65 16 8 H 0.08 4.20 7.84 -2.91 -0.02 4.18 16 9 N -0.63 -31.20 3.40 -695.25 -2.37 -33.56 16 10 C 0.19 8.74 4.73 86.48 0.41 9.15 16 11 C -0.11 -3.56 4.04 -9.40 -0.04 -3.60 16 12 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 13 C 0.13 4.59 6.26 86.58 0.54 5.13 16 14 N -0.60 -18.17 3.31 -817.55 -2.71 -20.88 16 15 C 0.53 17.55 7.13 87.66 0.62 18.17 16 16 O -0.58 -25.36 16.89 15.46 0.26 -25.10 16 17 C 0.06 1.34 2.62 29.90 0.08 1.42 16 18 H 0.12 2.16 7.89 -2.38 -0.02 2.14 16 19 C 0.04 0.92 6.20 72.03 0.45 1.37 16 20 O -0.38 -7.60 10.85 -136.00 -1.48 -9.07 16 21 C 0.01 0.21 7.05 72.03 0.51 0.72 16 22 C 0.02 0.30 7.05 72.03 0.51 0.80 16 23 O -0.39 -10.26 10.08 -123.12 -1.24 -11.50 16 24 C 0.10 2.13 5.58 86.66 0.48 2.61 16 25 C -0.09 -2.45 4.05 -9.40 -0.04 -2.49 16 26 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 27 C 0.14 5.14 6.67 86.58 0.58 5.72 16 28 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.00 0.14 8.08 -2.39 -0.02 0.12 16 30 H 0.04 2.18 6.23 -2.39 -0.01 2.17 16 31 H 0.03 1.34 7.47 -2.39 -0.02 1.32 16 32 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.13 2.48 5.70 -2.39 -0.01 2.46 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.14 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.64 5.16 -2.38 -0.01 1.63 16 40 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.02 0.65 7.52 -2.38 -0.02 0.63 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -79.23 328.42 1.17 -78.06 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.02 Total: 6.74 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 5.42 Total: 23.27 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -4.85 Total: -111.02 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -2.45 Total: -45.68 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -79.23 1.17 -78.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048694321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.125 kcal (2) G-P(sol) polarization free energy of solvation -79.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds