Wall clock time and date at job start Tue Mar 31 2020 04:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47328 * 95.01174 * 3 2 1 5 5 H 1.48503 * 109.47358 * 215.01187 * 3 2 1 6 6 H 1.48504 * 109.47297 * 335.01271 * 3 2 1 7 7 C 1.38814 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99664 * 167.11872 * 7 2 1 9 9 N 1.36930 * 119.99919 * 347.11694 * 7 2 1 10 10 C 1.46883 * 125.37052 * 349.33926 * 9 7 2 11 11 C 1.54196 * 106.39913 * 197.84883 * 10 9 7 12 12 H 1.09001 * 109.64233 * 89.91884 * 11 10 9 13 13 O 1.40786 * 110.23712 * 210.33567 * 11 10 9 14 14 C 1.42111 * 117.87401 * 67.05073 * 13 11 10 15 15 C 1.51981 * 111.37592 * 57.57174 * 14 13 11 16 16 N 1.44965 * 111.86491 * 318.94729 * 15 14 13 17 17 C 1.34778 * 117.32471 * 203.75658 * 16 15 14 18 18 O 1.21276 * 120.00088 * 176.57846 * 17 16 15 19 19 C 1.50705 * 120.00024 * 356.58267 * 17 16 15 20 20 H 1.08995 * 110.46001 * 57.39113 * 19 17 16 21 21 C 1.54510 * 110.51161 * 180.02562 * 19 17 16 22 22 C 1.54476 * 104.06273 * 118.64323 * 21 19 17 23 23 O 1.44419 * 104.80530 * 23.97408 * 22 21 19 24 24 C 1.44415 * 105.28021 * 319.49053 * 23 22 21 25 25 C 1.44533 * 125.34710 * 23.73629 * 16 15 14 26 26 H 1.09005 * 109.34457 * 106.67918 * 25 16 15 27 27 C 1.46787 * 125.36904 * 169.02556 * 9 7 2 28 28 H 0.96999 * 119.99762 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.06868 * 317.08130 * 10 9 7 30 30 H 1.09006 * 110.06963 * 78.55593 * 10 9 7 31 31 H 1.08996 * 109.42915 * 296.90447 * 14 13 11 32 32 H 1.09006 * 108.82152 * 177.83361 * 14 13 11 33 33 H 1.08997 * 109.00064 * 198.33435 * 15 14 13 34 34 H 1.09000 * 109.00037 * 79.56278 * 15 14 13 35 35 H 1.08996 * 110.50874 * 237.28727 * 21 19 17 36 36 H 1.09002 * 110.50789 * 359.85835 * 21 19 17 37 37 H 1.08994 * 110.37031 * 142.81262 * 22 21 19 38 38 H 1.09003 * 110.36722 * 265.14462 * 22 21 19 39 39 H 1.08998 * 110.37500 * 281.68166 * 24 23 22 40 40 H 1.08995 * 110.37555 * 159.33850 * 24 23 22 41 41 H 1.08997 * 109.82834 * 298.37077 * 27 9 7 42 42 H 1.09009 * 109.82064 * 59.32764 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6036 1.9853 1.3947 5 1 3.4908 1.4731 -0.8033 6 1 1.3987 2.6810 -0.5914 7 6 2.0103 -1.2022 0.0005 8 1 3.0699 -1.2140 -0.2080 9 7 1.3515 -2.3730 0.2655 10 6 -0.0213 -2.4792 0.7769 11 6 -0.1670 -3.9074 1.3395 12 1 0.1166 -3.9173 2.3919 13 8 -1.4980 -4.3479 1.2113 14 6 -2.0028 -4.5647 -0.0994 15 6 -1.1593 -5.5763 -0.8576 16 7 0.2580 -5.3800 -0.6248 17 6 1.1088 -5.8420 -1.5625 18 8 2.3006 -5.6492 -1.4478 19 6 0.5790 -6.5980 -2.7537 20 1 -0.1453 -5.9923 -3.2981 21 6 1.7372 -7.0238 -3.6835 22 6 1.6656 -8.5669 -3.6898 23 8 0.2969 -8.8743 -3.3466 24 6 -0.0553 -7.9344 -2.3082 25 6 0.8335 -4.7291 0.5302 26 1 1.2911 -5.4783 1.1763 27 6 1.9035 -3.7200 0.0770 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1834 -1.7471 1.5681 30 1 -0.7350 -2.3200 -0.0315 31 1 -2.0063 -3.6223 -0.6470 32 1 -3.0246 -4.9371 -0.0256 33 1 -1.3607 -5.4780 -1.9242 34 1 -1.4359 -6.5806 -0.5367 35 1 1.5846 -6.6303 -4.6885 36 1 2.6928 -6.6853 -3.2829 37 1 1.9046 -8.9538 -4.6804 38 1 2.3457 -8.9813 -2.9455 39 1 0.3608 -8.2517 -1.3521 40 1 -1.1384 -7.8353 -2.2375 41 1 2.1422 -3.8779 -0.9747 42 1 2.8016 -3.8395 0.6831 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083019778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:29 Heat of formation + Delta-G solvation = -68.916861 kcal Electronic energy + Delta-G solvation = -25895.886008 eV Core-core repulsion = 22263.859625 eV Total energy + Delta-G solvation = -3632.026383 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.16476 -39.44961 -38.02570 -35.92254 -34.97039 -32.76174 -31.97253 -30.08901 -29.53327 -27.97404 -27.29489 -24.76269 -23.54906 -23.38146 -22.43953 -20.65258 -19.72863 -18.59213 -17.76164 -17.07699 -16.71972 -16.58191 -15.77355 -15.66118 -15.13011 -15.06593 -14.70655 -14.56194 -14.08424 -13.97389 -13.42424 -13.23136 -12.80997 -12.67431 -12.42528 -12.19486 -11.89250 -11.62022 -11.49509 -11.39751 -11.04203 -10.96330 -10.85001 -10.72213 -10.62226 -10.40440 -10.13910 -10.03973 -9.75756 -9.42635 -9.01952 -8.60368 -8.30346 -6.78527 -5.76757 -3.08932 2.64754 2.95157 3.40086 3.45461 3.46903 3.74564 4.02920 4.25835 4.45851 4.51559 4.63448 4.79711 4.81293 4.98328 5.07871 5.08815 5.15841 5.25725 5.34720 5.41596 5.51384 5.53562 5.55322 5.64855 5.69254 5.78479 5.83121 5.88814 5.94175 6.05874 6.17883 6.50331 6.53063 6.79078 7.11659 7.31554 7.39500 7.41386 7.70885 7.78377 8.20303 8.29534 9.17646 9.79760 10.44714 11.36117 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.004889 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.147819 B = 5725.551231 C = 6516.629305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.288 1.288 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.600 5.600 10 C 0.151 3.849 11 C 0.068 3.932 12 H 0.113 0.887 13 O -0.369 6.369 14 C 0.054 3.946 15 C 0.075 3.925 16 N -0.585 5.585 17 C 0.514 3.486 18 O -0.519 6.519 19 C -0.146 4.146 20 H 0.109 0.891 21 C -0.147 4.147 22 C 0.045 3.955 23 O -0.374 6.374 24 C 0.060 3.940 25 C 0.113 3.887 26 H 0.071 0.929 27 C 0.123 3.877 28 H 0.253 0.747 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.681 -15.866 -3.963 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.218 1.218 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.026 3.974 11 C 0.009 3.991 12 H 0.130 0.870 13 O -0.286 6.286 14 C -0.023 4.023 15 C -0.048 4.048 16 N -0.319 5.319 17 C 0.301 3.699 18 O -0.395 6.395 19 C -0.167 4.167 20 H 0.127 0.873 21 C -0.185 4.185 22 C -0.031 4.031 23 O -0.292 6.292 24 C -0.018 4.018 25 C 0.009 3.991 26 H 0.089 0.911 27 C -0.003 4.003 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.080 0.920 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.376 -15.730 -3.811 16.534 hybrid contribution 0.580 1.233 -0.198 1.377 sum -2.796 -14.498 -4.009 15.299 Atomic orbital electron populations 1.69969 1.05009 1.25297 1.56203 1.24813 0.95573 0.97859 1.02036 0.86158 0.78712 0.83309 0.77749 1.21471 1.20656 1.21766 1.19004 0.91924 0.82906 1.41825 0.90493 1.44255 1.12286 1.00273 1.76037 1.21658 0.87701 0.90267 0.97785 1.22953 0.80283 0.95912 0.99986 0.86954 1.87072 1.27956 1.86900 1.26664 1.22400 0.96745 0.98252 0.84874 1.21759 0.81445 1.00275 1.01350 1.46677 1.06067 1.57486 1.21676 1.20274 0.86600 0.79469 0.83510 1.90660 1.15817 1.56221 1.76794 1.22726 0.99981 0.98086 0.95930 0.87297 1.22962 1.00026 0.95709 0.99759 1.23464 0.83841 0.94580 1.01233 1.89116 1.28536 1.55906 1.55686 1.23392 1.00757 0.86014 0.91608 1.21622 0.95655 0.95203 0.86657 0.91068 1.21837 0.93353 0.84126 1.00977 0.93708 0.92230 0.94045 0.91710 0.87802 0.89926 0.91536 0.90161 0.87852 0.88858 0.92034 0.91807 0.88215 0.92003 0.94982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.97 10.79 55.49 0.60 -26.38 16 2 C -0.01 -0.17 5.37 -17.43 -0.09 -0.26 16 3 Si 0.91 22.31 29.57 -169.99 -5.03 17.28 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.23 -6.51 10.20 -15.06 -0.15 -6.66 16 8 H 0.08 2.16 7.86 -52.49 -0.41 1.75 16 9 N -0.60 -15.66 3.39 -171.40 -0.58 -16.24 16 10 C 0.15 3.64 4.98 -3.21 -0.02 3.63 16 11 C 0.07 1.29 3.91 -26.27 -0.10 1.18 16 12 H 0.11 2.00 8.14 -51.93 -0.42 1.57 16 13 O -0.37 -6.29 10.32 -34.52 -0.36 -6.65 16 14 C 0.05 0.75 6.74 36.64 0.25 1.00 16 15 C 0.08 0.92 4.98 -5.38 -0.03 0.89 16 16 N -0.59 -9.26 3.08 -169.00 -0.52 -9.78 16 17 C 0.51 8.13 6.27 -10.98 -0.07 8.07 16 18 O -0.52 -9.91 12.30 5.56 0.07 -9.84 16 19 C -0.15 -1.73 2.57 -90.20 -0.23 -1.96 16 20 H 0.11 1.17 7.02 -51.93 -0.36 0.80 16 21 C -0.15 -1.66 6.67 -25.16 -0.17 -1.82 16 22 C 0.05 0.46 7.63 37.93 0.29 0.75 16 23 O -0.37 -4.32 11.65 -35.23 -0.41 -4.73 16 24 C 0.06 0.62 5.91 37.94 0.22 0.84 16 25 C 0.11 2.07 3.37 -68.67 -0.23 1.84 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 27 C 0.12 2.76 6.01 -3.41 -0.02 2.74 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.06 1.59 7.44 -51.93 -0.39 1.20 16 30 H 0.04 1.09 6.00 -51.93 -0.31 0.78 16 31 H 0.06 1.04 6.69 -51.93 -0.35 0.70 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 0.85 6.27 -51.93 -0.33 0.52 16 34 H 0.07 0.65 7.12 -51.93 -0.37 0.28 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.36 6.50 -51.93 -0.34 1.02 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.69 7.86 -51.93 -0.41 0.28 16 40 H 0.10 0.81 7.20 -51.93 -0.37 0.44 16 41 H 0.06 1.51 5.17 -51.93 -0.27 1.24 16 42 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 LS Contribution 317.46 15.07 4.78 4.78 Total: -1.00 -33.14 317.46 -7.80 -40.94 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.00 Total: 0.39 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -0.35 Total: 10.22 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.50 Total: -52.40 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.70 Total: -21.22 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.14 -7.80 -40.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083019778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.977 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds