Wall clock time and date at job start Tue Mar 31 2020 03:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99876 * 2 1 4 4 H 1.48506 * 109.46733 * 239.99660 * 3 2 1 5 5 H 1.48497 * 109.47337 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47325 * 119.99988 * 3 2 1 7 7 C 1.38813 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00039 * 197.35781 * 7 2 1 9 9 N 1.36937 * 119.99967 * 17.36804 * 7 2 1 10 10 C 1.46928 * 120.63473 * 27.66480 * 9 7 2 11 11 C 1.53191 * 108.77268 * 126.41628 * 10 9 7 12 12 C 1.53035 * 109.31100 * 54.63914 * 11 10 9 13 13 H 1.09006 * 109.45752 * 178.61954 * 12 11 10 14 14 N 1.46506 * 109.46282 * 58.65675 * 12 11 10 15 15 C 1.34773 * 120.00513 * 84.99542 * 14 12 11 16 16 O 1.21279 * 119.99686 * 0.02562 * 15 14 12 17 17 C 1.50699 * 119.99965 * 180.27589 * 15 14 12 18 18 N 1.46508 * 109.46793 * 179.72442 * 17 15 14 19 19 C 1.34599 * 126.43383 * 124.71583 * 18 17 15 20 20 N 1.31072 * 106.67091 * 179.87437 * 19 18 17 21 21 N 1.28832 * 107.99655 * 0.38835 * 20 19 18 22 22 N 1.28741 * 109.39775 * 359.74850 * 21 20 19 23 23 C 1.53039 * 109.54071 * 298.63224 * 12 11 10 24 24 H 1.09003 * 109.49357 * 301.41477 * 23 12 11 25 25 O 1.42902 * 109.49950 * 181.31870 * 23 12 11 26 26 C 1.46933 * 120.62677 * 207.69447 * 9 7 2 27 27 H 0.96996 * 119.99934 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.57992 * 6.63023 * 10 9 7 29 29 H 1.09002 * 109.70474 * 246.27902 * 10 9 7 30 30 H 1.08994 * 109.50157 * 294.68385 * 11 10 9 31 31 H 1.09001 * 109.51918 * 174.60508 * 11 10 9 32 32 H 0.97000 * 119.99065 * 264.99650 * 14 12 11 33 33 H 1.08990 * 109.47301 * 299.72634 * 17 15 14 34 34 H 1.09004 * 109.47037 * 59.73199 * 17 15 14 35 35 H 1.07996 * 126.66093 * 0.02562 * 19 18 17 36 36 H 0.96702 * 113.99710 * 179.97438 * 25 23 12 37 37 H 1.08997 * 109.58555 * 353.36770 * 26 9 7 38 38 H 1.08997 * 109.58410 * 113.65349 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0534 -1.2234 0.2796 9 7 1.3724 -2.3612 -0.3529 10 6 0.2278 -2.3350 -1.2738 11 6 0.5007 -3.3055 -2.4272 12 6 0.8185 -4.6904 -1.8589 13 1 0.9891 -5.3888 -2.6782 14 7 -0.3094 -5.1558 -1.0479 15 6 -1.3506 -5.7779 -1.6354 16 8 -1.3536 -5.9529 -2.8355 17 6 -2.5136 -6.2510 -0.8020 18 7 -3.5102 -6.8844 -1.6692 19 6 -4.0093 -8.1275 -1.5382 20 7 -4.8687 -8.2924 -2.5140 21 7 -4.8899 -7.2103 -3.2128 22 7 -4.0702 -6.3573 -2.7051 23 6 2.0742 -4.6104 -0.9877 24 1 2.9080 -4.2407 -1.5845 25 8 2.3877 -5.9098 -0.4823 26 6 1.8192 -3.6547 0.1820 27 1 -0.4850 0.8400 -0.0004 28 1 0.0987 -1.3267 -1.6674 29 1 -0.6758 -2.6396 -0.7458 30 1 1.3493 -2.9481 -3.0105 31 1 -0.3797 -3.3679 -3.0667 32 1 -0.3067 -5.0161 -0.0880 33 1 -2.1623 -6.9728 -0.0647 34 1 -2.9646 -5.4001 -0.2913 35 1 -3.7533 -8.8481 -0.7756 36 1 3.1745 -5.9340 0.0794 37 1 2.7400 -3.5172 0.7490 38 1 1.0479 -4.0672 0.8323 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090056214.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:03 Heat of formation + Delta-G solvation = 69.838604 kcal Electronic energy + Delta-G solvation = -24472.316571 eV Core-core repulsion = 20775.059485 eV Total energy + Delta-G solvation = -3697.257086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.138 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.20442 -40.15385 -38.22660 -35.64311 -35.43988 -34.28609 -32.51173 -31.98054 -30.58384 -29.27823 -28.40372 -25.46368 -23.88685 -23.64720 -22.45951 -22.03371 -21.07056 -18.98203 -18.10908 -17.80893 -17.20442 -16.72760 -16.47763 -16.08154 -15.59178 -15.13949 -15.03483 -14.42893 -14.03182 -13.99523 -13.65364 -13.30819 -12.84897 -12.71681 -12.39909 -12.18319 -12.15240 -11.80749 -11.29286 -11.23425 -11.17882 -10.96641 -10.81354 -10.52191 -10.45080 -10.34399 -10.07878 -10.00970 -9.82134 -9.57908 -8.90949 -8.62012 -6.90527 -5.97490 -3.42100 1.18521 1.73755 2.23537 2.44874 3.06797 3.27535 3.34953 3.35321 4.01311 4.09748 4.21876 4.38017 4.49606 4.58345 4.73445 5.14045 5.17620 5.31408 5.33459 5.41896 5.53807 5.61539 5.79546 5.89381 5.94997 6.06810 6.29465 6.37570 6.49086 6.52287 6.69037 7.13602 7.45460 7.47667 7.61441 7.75242 8.12484 8.24651 8.57570 9.00336 9.62523 10.16650 11.10668 Molecular weight = 296.14amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.003889 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.560109 B = 7198.667388 C = 7948.606106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.008 3.992 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.586 5.586 10 C 0.172 3.828 11 C -0.155 4.155 12 C 0.169 3.831 13 H 0.080 0.920 14 N -0.695 5.695 15 C 0.502 3.498 16 O -0.521 6.521 17 C 0.093 3.907 18 N -0.296 5.296 19 C 0.156 3.844 20 N -0.310 5.310 21 N -0.083 5.083 22 N -0.057 5.057 23 C 0.075 3.925 24 H 0.069 0.931 25 O -0.572 6.572 26 C 0.119 3.881 27 H 0.257 0.743 28 H 0.091 0.909 29 H 0.021 0.979 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.405 0.595 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.234 0.766 36 H 0.375 0.625 37 H 0.060 0.940 38 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 -13.032 3.861 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.191 4.191 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.393 4.393 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.046 3.954 11 C -0.195 4.195 12 C 0.064 3.936 13 H 0.098 0.902 14 N -0.347 5.347 15 C 0.284 3.716 16 O -0.396 6.396 17 C -0.032 4.032 18 N -0.098 5.098 19 C -0.143 4.143 20 N -0.158 5.158 21 N -0.078 5.078 22 N -0.044 5.044 23 C 0.015 3.985 24 H 0.087 0.913 25 O -0.377 6.377 26 C -0.009 4.009 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.241 0.759 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.250 0.750 36 H 0.222 0.778 37 H 0.078 0.922 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -1.736 -12.753 1.504 12.958 hybrid contribution 1.620 0.944 1.809 2.605 sum -0.116 -11.810 3.313 12.266 Atomic orbital electron populations 1.70004 1.05323 1.26024 1.52849 1.25044 0.95292 0.98552 1.00221 0.86346 0.78961 0.83082 0.78214 1.20866 1.21505 1.20805 1.19107 0.92741 0.84659 1.42807 0.91575 1.44008 1.35933 1.00881 1.50227 1.20794 0.88377 0.98576 0.87633 1.22612 1.01819 0.94498 1.00571 1.20899 0.83251 0.96663 0.92742 0.90162 1.45798 1.19237 1.57766 1.11944 1.19976 0.83570 0.79390 0.88647 1.90821 1.78647 1.56076 1.14040 1.22064 0.87583 1.02132 0.91465 1.48167 1.29419 1.11760 1.20433 1.27695 0.96061 0.88353 1.02143 1.74952 1.17965 1.18617 1.04258 1.78666 1.13793 0.95337 1.19970 1.79067 1.05894 1.22389 0.97031 1.22760 0.96058 0.83000 0.96727 0.91346 1.86456 1.50606 1.30297 1.70344 1.21529 0.98569 0.87732 0.93052 0.93323 0.89104 0.96088 0.91247 0.91635 0.75914 0.84013 0.84463 0.74980 0.77786 0.92163 0.96058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.25 11.19 55.49 0.62 -23.63 16 2 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16 3 Si 0.90 20.38 29.59 -169.99 -5.03 15.35 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.26 -6.57 9.59 -15.06 -0.14 -6.72 16 8 H 0.07 1.61 7.89 -52.49 -0.41 1.20 16 9 N -0.59 -12.81 3.00 -172.32 -0.52 -13.32 16 10 C 0.17 3.67 5.05 -3.71 -0.02 3.65 16 11 C -0.15 -2.80 5.77 -26.61 -0.15 -2.95 16 12 C 0.17 2.66 2.47 -67.89 -0.17 2.49 16 13 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 14 N -0.70 -9.35 4.16 -53.76 -0.22 -9.57 16 15 C 0.50 6.78 7.81 -10.99 -0.09 6.69 16 16 O -0.52 -9.45 15.36 5.56 0.09 -9.37 16 17 C 0.09 0.79 6.97 -5.19 -0.04 0.76 16 18 N -0.30 -3.48 3.19 -63.73 -0.20 -3.68 16 19 C 0.16 1.53 12.79 -90.39 -1.16 0.37 16 20 N -0.31 -4.38 12.36 29.59 0.37 -4.01 16 21 N -0.08 -1.40 13.43 60.35 0.81 -0.59 16 22 N -0.06 -0.93 12.29 60.35 0.74 -0.18 16 23 C 0.08 1.11 3.36 -26.61 -0.09 1.02 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 O -0.57 -7.20 13.21 -35.23 -0.47 -7.67 16 26 C 0.12 2.02 5.84 -3.71 -0.02 2.00 16 27 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 29 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.40 4.82 6.87 -40.82 -0.28 4.54 16 33 H 0.14 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.23 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.38 3.23 9.08 45.56 0.41 3.64 16 37 H 0.06 1.00 7.93 -51.93 -0.41 0.59 16 38 H 0.02 0.35 6.65 -51.93 -0.35 0.01 16 LS Contribution 320.43 15.07 4.83 4.83 Total: -1.00 -35.02 320.43 -4.76 -39.78 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -3.81 Total: 4.61 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -1.96 Total: 7.46 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 1.60 Total: -54.99 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.38 Total: -17.04 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.02 -4.76 -39.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090056214.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.615 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds