Wall clock time and date at job start Tue Mar 31 2020 03:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00101 * 2 1 4 4 H 1.48503 * 109.47241 * 269.99706 * 3 2 1 5 5 H 1.48502 * 109.47470 * 30.00067 * 3 2 1 6 6 H 1.48504 * 109.47177 * 149.99770 * 3 2 1 7 7 C 1.37877 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00409 * 185.18705 * 7 2 1 9 9 C 1.50702 * 119.99802 * 5.18895 * 7 2 1 10 10 C 1.53001 * 115.55095 * 275.31095 * 9 7 2 11 11 N 1.46502 * 109.46921 * 269.67886 * 10 9 7 12 12 C 1.34781 * 119.99667 * 185.00793 * 11 10 9 13 13 O 1.21348 * 119.99970 * 4.80546 * 12 11 10 14 14 C 1.49444 * 119.99892 * 185.07658 * 12 11 10 15 15 O 1.21348 * 119.99840 * 355.08373 * 14 12 11 16 16 N 1.34776 * 119.99982 * 175.07793 * 14 12 11 17 17 C 1.47425 * 125.64828 * 0.02837 * 16 14 12 18 18 C 1.54915 * 104.82788 * 155.83232 * 17 16 14 19 19 C 1.55155 * 101.58278 * 37.01348 * 18 17 16 20 20 C 1.47021 * 125.64611 * 179.72004 * 16 14 12 21 21 H 1.09004 * 109.88298 * 300.51211 * 20 16 14 22 22 C 1.53004 * 109.88702 * 61.67858 * 20 16 14 23 23 O 1.42902 * 109.46779 * 293.54955 * 22 20 16 24 24 C 1.53008 * 117.51800 * 61.01366 * 9 7 2 25 25 C 1.52995 * 60.00029 * 107.48148 * 24 9 7 26 26 H 0.97001 * 119.99402 * 5.00309 * 1 2 3 27 27 H 1.09005 * 109.46625 * 149.68191 * 10 9 7 28 28 H 1.08998 * 109.46963 * 29.68157 * 10 9 7 29 29 H 0.96996 * 119.99953 * 5.01719 * 11 10 9 30 30 H 1.09000 * 110.36628 * 274.66855 * 17 16 14 31 31 H 1.09003 * 110.36613 * 36.88707 * 17 16 14 32 32 H 1.09005 * 111.00113 * 155.08525 * 18 17 16 33 33 H 1.08997 * 111.00401 * 278.89438 * 18 17 16 34 34 H 1.08994 * 110.72336 * 82.85603 * 19 18 17 35 35 H 1.09001 * 110.71968 * 206.13480 * 19 18 17 36 36 H 1.08998 * 109.46486 * 53.54635 * 22 20 16 37 37 H 1.08992 * 109.47343 * 173.54543 * 22 20 16 38 38 H 0.96702 * 113.99653 * 180.02562 * 23 22 20 39 39 H 1.09000 * 117.49811 * 214.97170 * 24 9 7 40 40 H 1.08997 * 117.49872 * 359.97438 * 24 9 7 41 41 H 1.09002 * 117.49950 * 252.51450 * 25 24 9 42 42 H 1.09000 * 117.52120 * 107.47875 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1960 0.0851 9 6 1.2556 -2.4965 -0.1169 10 6 0.7095 -3.0644 1.1947 11 7 1.7109 -3.9465 1.7993 12 6 1.4111 -4.6417 2.9143 13 8 0.2862 -4.6052 3.3680 14 6 2.4656 -5.4525 3.5954 15 8 3.5669 -5.5574 3.0968 16 7 2.1934 -6.0673 4.7635 17 6 0.9040 -6.0246 5.4769 18 6 0.8892 -7.3066 6.3464 19 6 2.3758 -7.4064 6.7795 20 6 3.1313 -6.8968 5.5341 21 1 3.4637 -7.7403 4.9290 22 6 4.3348 -6.0567 5.9666 23 8 5.0848 -5.6700 4.8133 24 6 0.4289 -2.7249 -1.3841 25 6 1.7345 -3.4941 -1.1735 26 1 -0.4849 0.8369 -0.0733 27 1 -0.2001 -3.6307 0.9946 28 1 0.4852 -2.2464 1.8792 29 1 2.5896 -4.0300 1.3971 30 1 0.8488 -5.1375 6.1080 31 1 0.0770 -6.0362 4.7669 32 1 0.2376 -7.1843 7.2117 33 1 0.5941 -8.1748 5.7573 34 1 2.5702 -6.7678 7.6411 35 1 2.6460 -8.4401 6.9954 36 1 3.9868 -5.1658 6.4893 37 1 4.9678 -6.6441 6.6315 38 1 5.8645 -5.1340 5.0128 39 1 -0.5040 -3.2796 -1.2832 40 1 0.4263 -1.9328 -2.1328 41 1 2.5912 -3.2082 -1.7838 42 1 1.6611 -4.5549 -0.9340 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117685336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:04 Heat of formation + Delta-G solvation = -107.249811 kcal Electronic energy + Delta-G solvation = -24599.951079 eV Core-core repulsion = 20966.262455 eV Total energy + Delta-G solvation = -3633.688624 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79991 -40.13416 -38.60864 -38.46960 -37.12932 -35.09734 -33.96519 -32.64871 -31.22980 -28.79461 -27.45313 -26.22115 -25.26638 -23.13341 -22.77932 -21.83645 -21.27247 -20.43161 -18.86627 -18.21626 -18.02021 -17.84459 -17.41233 -16.80719 -16.52299 -16.32165 -15.65522 -15.48464 -15.33568 -14.90021 -14.72238 -14.41353 -14.20969 -13.88086 -13.66332 -13.42118 -13.23566 -13.01721 -12.80333 -12.77153 -12.60197 -12.39397 -12.17431 -12.06628 -11.88724 -11.62608 -11.52251 -10.90464 -10.85640 -10.53851 -10.47332 -10.11159 -10.01877 -9.70442 -8.13365 -6.26345 0.47536 1.33142 1.41753 1.43630 1.52377 2.24909 2.42009 2.56642 3.15600 3.26779 3.33676 3.53123 3.67586 3.80803 4.11817 4.16890 4.21529 4.30380 4.44263 4.50683 4.55801 4.56707 4.62467 4.69484 4.85323 4.91099 4.95178 4.98698 5.03141 5.11246 5.22908 5.25167 5.32742 5.41085 5.56808 5.61502 5.74688 6.14363 6.34294 6.38838 6.76964 6.84399 6.96159 7.06552 7.43462 8.95026 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.020368 B = 0.003816 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.346911 B = 7336.580311 C = 7671.982893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.028 3.972 3 Si 0.949 3.051 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.000 4.000 10 C 0.179 3.821 11 N -0.677 5.677 12 C 0.495 3.505 13 O -0.550 6.550 14 C 0.513 3.487 15 O -0.504 6.504 16 N -0.591 5.591 17 C 0.085 3.915 18 C -0.123 4.123 19 C -0.111 4.111 20 C 0.125 3.875 21 H 0.073 0.927 22 C 0.061 3.939 23 O -0.571 6.571 24 C -0.149 4.149 25 C -0.179 4.179 26 H 0.261 0.739 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.413 0.587 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.381 0.619 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 -15.190 15.247 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.173 4.173 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.549 4.549 8 H 0.073 0.927 9 C -0.001 4.001 10 C 0.056 3.944 11 N -0.327 5.327 12 C 0.276 3.724 13 O -0.430 6.430 14 C 0.295 3.705 15 O -0.378 6.378 16 N -0.327 5.327 17 C -0.037 4.037 18 C -0.161 4.161 19 C -0.149 4.149 20 C 0.023 3.977 21 H 0.091 0.909 22 C -0.018 4.018 23 O -0.377 6.377 24 C -0.187 4.187 25 C -0.217 4.217 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.249 0.751 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.061 0.939 37 H 0.102 0.898 38 H 0.229 0.771 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.245 -15.361 14.980 21.872 hybrid contribution 0.911 1.687 -0.307 1.941 sum 5.156 -13.674 14.673 20.709 Atomic orbital electron populations 1.70112 1.06993 1.27599 1.49373 1.25653 0.95549 1.01897 0.94211 0.85691 0.78742 0.79790 0.78263 1.19964 1.21202 1.19524 1.20704 0.92686 0.90034 1.51488 0.92655 1.19092 1.00161 0.94458 0.86358 1.20878 0.88809 0.90036 0.94645 1.45947 1.18472 1.42504 1.25776 1.20505 0.88538 0.81276 0.82034 1.90634 1.22788 1.64241 1.65321 1.19677 0.87458 0.81359 0.82044 1.90808 1.22734 1.60512 1.63744 1.48393 1.15622 1.48537 1.20112 1.22809 0.85074 0.99870 0.95930 1.22841 0.97218 0.95922 1.00129 1.22676 0.93750 1.03835 0.94644 1.22070 0.89196 0.92616 0.93859 0.90880 1.22719 0.92882 0.97913 0.88275 1.86910 1.43546 1.74614 1.32604 1.22473 0.93470 1.01214 1.01576 1.22965 0.97925 0.96157 1.04611 0.92964 0.93500 0.93940 0.75114 0.91351 0.90002 0.86942 0.90162 0.88432 0.86909 0.93908 0.89764 0.77109 0.90666 0.91495 0.89576 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.13 12.91 21.45 0.28 -50.85 16 2 C 0.03 1.51 5.40 84.65 0.46 1.97 16 3 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.51 -27.48 8.77 25.60 0.22 -27.25 16 8 H 0.06 2.97 7.82 -2.91 -0.02 2.95 16 9 C 0.00 0.01 1.45 -52.92 -0.08 -0.07 16 10 C 0.18 8.45 5.71 86.38 0.49 8.94 16 11 N -0.68 -28.17 5.40 -464.40 -2.51 -30.68 16 12 C 0.50 19.73 7.84 87.27 0.68 20.42 16 13 O -0.55 -23.19 13.74 -3.24 -0.04 -23.23 16 14 C 0.51 18.35 7.66 87.27 0.67 19.02 16 15 O -0.50 -19.77 13.76 19.83 0.27 -19.49 16 16 N -0.59 -16.44 3.07 -789.61 -2.42 -18.86 16 17 C 0.09 1.96 6.15 86.86 0.53 2.50 16 18 C -0.12 -1.60 7.08 31.99 0.23 -1.37 16 19 C -0.11 -1.19 6.47 31.78 0.21 -0.99 16 20 C 0.12 2.54 3.30 45.34 0.15 2.69 16 21 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 22 C 0.06 1.17 6.47 71.98 0.47 1.63 16 23 O -0.57 -15.11 10.33 -125.91 -1.30 -16.41 16 24 C -0.15 -6.86 9.38 30.60 0.29 -6.58 16 25 C -0.18 -7.45 9.50 30.59 0.29 -7.15 16 26 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 27 H 0.05 2.20 7.84 -2.38 -0.02 2.18 16 28 H 0.04 2.27 8.04 -2.39 -0.02 2.25 16 29 H 0.41 16.71 7.71 -92.71 -0.71 16.00 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 2.31 6.03 -2.39 -0.01 2.29 16 32 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 0.76 7.86 -2.39 -0.02 0.74 16 35 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.38 7.00 9.12 -74.06 -0.68 6.33 16 39 H 0.07 3.26 8.03 -2.39 -0.02 3.24 16 40 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 42 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -69.22 347.41 0.57 -68.65 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.35 Total: 31.92 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 4.61 Total: 13.75 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -4.65 Total: -100.39 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -1.07 Total: -59.13 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -69.22 0.57 -68.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117685336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.600 kcal (2) G-P(sol) polarization free energy of solvation -69.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds