Wall clock time and date at job start Tue Mar 31 2020 03:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47047 * 10.25999 * 4 3 2 6 6 C 1.46901 * 111.00084 * 66.04752 * 5 4 3 7 7 C 1.46902 * 111.00139 * 189.99789 * 5 4 3 8 8 H 1.09006 * 110.88126 * 300.70295 * 7 5 4 9 9 C 1.55147 * 111.00703 * 176.82192 * 7 5 4 10 10 C 1.54330 * 102.94309 * 206.42435 * 9 7 5 11 11 N 1.47024 * 107.27060 * 22.19245 * 10 9 7 12 12 C 1.34769 * 125.64751 * 181.00506 * 11 10 9 13 13 O 1.21287 * 119.99677 * 180.02562 * 12 11 10 14 14 C 1.50701 * 120.00185 * 0.02562 * 12 11 10 15 15 S 1.81000 * 109.47049 * 179.97438 * 14 12 11 16 16 C 1.76199 * 99.99929 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00063 * 0.02562 * 16 15 14 18 18 C 1.38802 * 120.00061 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99831 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99771 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47352 * 90.00054 * 20 18 16 22 22 H 1.48504 * 109.46646 * 209.99707 * 20 18 16 23 23 H 1.48500 * 109.47556 * 329.99586 * 20 18 16 24 24 C 1.47469 * 108.72255 * 1.02532 * 11 10 9 25 25 H 1.09001 * 109.47046 * 229.74167 * 1 2 3 26 26 H 1.08996 * 109.47170 * 349.73467 * 1 2 3 27 27 H 1.08992 * 109.47449 * 109.74243 * 1 2 3 28 28 H 1.09001 * 109.47046 * 130.25833 * 4 3 2 29 29 H 1.08996 * 109.47366 * 250.26237 * 4 3 2 30 30 H 1.08997 * 109.47489 * 59.99527 * 6 5 4 31 31 H 1.08993 * 109.47381 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47102 * 299.99662 * 6 5 4 33 33 H 1.08999 * 110.72447 * 324.78555 * 9 7 5 34 34 H 1.09001 * 110.72391 * 88.06442 * 9 7 5 35 35 H 1.09002 * 109.88359 * 141.61091 * 10 9 7 36 36 H 1.08997 * 109.88126 * 262.77676 * 10 9 7 37 37 H 1.08992 * 109.47203 * 300.00173 * 14 12 11 38 38 H 1.08998 * 109.46818 * 60.00370 * 14 12 11 39 39 H 0.97002 * 119.99690 * 180.02562 * 19 18 16 40 40 H 1.09001 * 110.40654 * 217.08585 * 24 11 10 41 41 H 1.09001 * 110.35093 * 94.74138 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 7 4.6089 -1.3605 -0.2467 6 6 4.2599 -1.8087 -1.6014 7 6 6.0578 -1.4471 -0.0206 8 1 6.5950 -0.7616 -0.6762 9 6 6.5633 -2.9025 -0.2036 10 6 7.8221 -2.9459 0.6883 11 7 7.6904 -1.8702 1.6818 12 6 8.5947 -1.5648 2.6333 13 8 8.3801 -0.6526 3.4033 14 6 9.8724 -2.3566 2.7404 15 16 10.8711 -1.7088 4.1039 16 6 12.2616 -2.7863 4.0035 17 1 12.2940 -3.5570 3.2477 18 6 13.3152 -2.6446 4.8959 19 7 13.2754 -1.7056 5.8175 20 14 14.7896 -3.7866 4.7890 21 1 15.8063 -3.1986 3.8802 22 1 15.3776 -3.9636 6.1411 23 1 14.3572 -5.1054 4.2608 24 6 6.4048 -1.1808 1.4655 25 1 -0.3633 -0.6641 0.7843 26 1 -0.3633 1.0112 0.1831 27 1 -0.3634 -0.3471 -0.9672 28 1 4.4808 0.6663 -0.7843 29 1 4.4811 0.3492 0.9672 30 1 4.7092 -1.1374 -2.3333 31 1 4.6354 -2.8198 -1.7577 32 1 3.1762 -1.8011 -1.7187 33 1 5.8179 -3.6166 0.1464 34 1 6.8221 -3.0928 -1.2452 35 1 7.8862 -3.9103 1.1923 36 1 8.7124 -2.7827 0.0811 37 1 9.6362 -3.4039 2.9281 38 1 10.4317 -2.2716 1.8086 39 1 14.0119 -1.6064 6.4409 40 1 6.5125 -0.1110 1.6441 41 1 5.6362 -1.5994 2.1153 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188972746.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:03 Heat of formation + Delta-G solvation = 23.215219 kcal Electronic energy + Delta-G solvation = -20691.002471 eV Core-core repulsion = 17505.724106 eV Total energy + Delta-G solvation = -3185.278365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.05577 -38.27181 -36.20409 -34.09466 -32.42209 -31.35306 -30.01682 -29.41247 -28.27081 -26.74262 -25.48978 -24.12878 -22.92187 -20.50609 -19.33671 -17.76994 -17.00458 -16.96838 -16.50484 -15.62653 -15.31094 -14.84318 -14.78491 -14.56264 -14.34433 -13.92344 -13.85218 -13.77187 -13.54624 -13.30565 -12.84684 -12.76336 -12.61574 -12.49085 -12.04239 -11.79972 -11.65434 -11.22910 -11.16296 -11.05512 -11.01090 -10.75683 -10.18802 -9.98124 -9.80990 -9.40880 -9.05894 -8.79173 -8.49355 -8.22413 -6.49380 -6.20823 -3.91415 2.29340 2.48401 2.89351 3.07236 3.22810 3.25865 3.30684 3.55638 3.73832 3.98088 4.18107 4.21960 4.44567 4.76669 4.85691 4.94062 5.02487 5.08481 5.12965 5.14462 5.17950 5.23222 5.27283 5.29788 5.37559 5.48930 5.53433 5.59038 5.59402 5.63418 5.73333 5.78445 5.85335 5.96054 6.15196 6.38075 6.55570 6.67181 7.40705 7.60246 7.67418 8.36036 8.56336 9.24342 10.86616 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.038534 B = 0.002491 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.450787 B =11239.490866 C =11796.799501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.184 4.184 3 C -0.177 4.177 4 C 0.164 3.836 5 N -0.528 5.528 6 C 0.024 3.976 7 C 0.067 3.933 8 H 0.063 0.937 9 C -0.121 4.121 10 C 0.104 3.896 11 N -0.626 5.626 12 C 0.549 3.451 13 O -0.515 6.515 14 C -0.146 4.146 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.116 3.884 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.076 0.924 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.960 -0.919 -17.144 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.185 4.185 3 C -0.177 4.177 4 C 0.038 3.962 5 N -0.253 5.253 6 C -0.124 4.124 7 C -0.042 4.042 8 H 0.081 0.919 9 C -0.160 4.160 10 C -0.020 4.020 11 N -0.364 5.364 12 C 0.338 3.662 13 O -0.389 6.389 14 C -0.297 4.297 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.007 4.007 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.328 0.225 -15.436 26.329 hybrid contribution 1.569 -1.297 -1.598 2.588 sum -19.759 -1.072 -17.034 26.109 Atomic orbital electron populations 1.18849 0.84680 1.03017 1.02977 1.22383 0.93850 1.00284 1.02001 1.21956 0.93141 1.01633 1.01001 1.19017 0.84952 0.89643 1.02625 1.61930 1.12696 1.22859 1.27781 1.22414 1.01725 1.00679 0.87544 1.22833 0.86955 0.97638 0.96745 0.91927 1.22709 0.97020 0.96198 1.00030 1.21989 0.98194 0.91464 0.90361 1.48428 1.19611 1.34840 1.33509 1.20030 0.83635 0.83882 0.78685 1.90712 1.77228 1.30279 1.40719 1.23500 0.96604 1.02715 1.06839 1.85405 1.16932 1.45493 1.35611 1.22858 1.04979 1.19877 1.20576 0.90922 1.24998 0.98230 0.95905 0.94495 1.70021 1.32097 1.31144 1.16996 0.86163 0.81327 0.80336 0.77638 1.20287 1.20748 1.19690 1.22111 0.85959 0.98317 0.94350 0.90123 0.90249 0.90337 0.92256 0.88050 0.95350 0.90759 0.91194 0.89333 0.90087 0.90929 0.91182 0.89240 0.89297 0.92187 0.90526 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.23 10.32 34.37 0.35 0.13 16 2 C -0.18 -1.76 14.13 -37.12 -0.52 -2.29 16 3 C -0.18 -1.83 12.44 -37.12 -0.46 -2.29 16 4 C 0.16 1.50 5.35 -6.61 -0.04 1.47 16 5 N -0.53 -4.83 4.64 -235.81 -1.09 -5.92 16 6 C 0.02 0.18 9.16 60.07 0.55 0.73 16 7 C 0.07 0.63 2.71 -65.56 -0.18 0.45 16 8 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 9 C -0.12 -1.00 5.21 -24.90 -0.13 -1.13 16 10 C 0.10 1.12 6.49 -3.06 -0.02 1.10 16 11 N -0.63 -9.26 3.33 -170.47 -0.57 -9.82 16 12 C 0.55 10.82 7.87 -10.99 -0.09 10.74 16 13 O -0.52 -12.18 16.12 5.55 0.09 -12.09 16 14 C -0.15 -3.04 5.35 36.01 0.19 -2.84 16 15 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 16 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 20 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C 0.12 1.46 5.47 -2.50 -0.01 1.45 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.10 0.94 6.80 -51.93 -0.35 0.59 16 30 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.48 6.92 -51.93 -0.36 0.12 16 32 H 0.07 0.55 7.29 -51.93 -0.38 0.17 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.51 8.01 -51.93 -0.42 0.10 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 38 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.08 1.02 7.69 -51.93 -0.40 0.62 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -35.12 358.74 -9.34 -44.46 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -6.52 Total: -3.52 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.15 Total: -5.52 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: -0.93 Total: -41.31 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.12 -9.34 -44.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188972746.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.679 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds