Wall clock time and date at job start Tue Mar 31 2020 03:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17396 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47290 * 225.48382 * 4 3 2 6 6 C 1.46896 * 110.99957 * 293.95751 * 5 4 3 7 7 C 1.46893 * 110.99939 * 169.99845 * 5 4 3 8 8 H 1.09005 * 110.88385 * 62.43437 * 7 5 4 9 9 C 1.55160 * 111.03337 * 186.33095 * 7 5 4 10 10 C 1.54334 * 103.01688 * 153.40243 * 9 7 5 11 11 N 1.47027 * 107.26801 * 338.13639 * 10 9 7 12 12 C 1.34778 * 125.64932 * 178.84839 * 11 10 9 13 13 O 1.21276 * 119.99491 * 179.69566 * 12 11 10 14 14 C 1.50699 * 119.99778 * 359.70134 * 12 11 10 15 15 S 1.81004 * 109.46742 * 179.97438 * 14 12 11 16 16 C 1.76203 * 99.99907 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99736 * 359.97438 * 16 15 14 18 18 C 1.38798 * 119.99832 * 180.27629 * 16 15 14 19 19 N 1.31634 * 120.00296 * 359.72198 * 18 16 15 20 20 Si 1.86801 * 119.99859 * 179.72079 * 18 16 15 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47021 * 119.99666 * 20 18 16 23 23 H 1.48501 * 109.47039 * 240.00083 * 20 18 16 24 24 C 1.47426 * 108.69892 * 358.59456 * 11 10 9 25 25 H 1.08995 * 109.47146 * 134.51423 * 1 2 3 26 26 H 1.09003 * 109.47198 * 254.51478 * 1 2 3 27 27 H 1.09005 * 109.47527 * 14.51466 * 1 2 3 28 28 H 1.09003 * 109.47198 * 105.48522 * 4 3 2 29 29 H 1.08999 * 109.47125 * 345.48740 * 4 3 2 30 30 H 1.09001 * 109.47171 * 296.04350 * 6 5 4 31 31 H 1.09007 * 109.47228 * 56.04372 * 6 5 4 32 32 H 1.09002 * 109.47287 * 176.04321 * 6 5 4 33 33 H 1.09001 * 110.72328 * 271.95699 * 9 7 5 34 34 H 1.08998 * 110.71888 * 35.23232 * 9 7 5 35 35 H 1.09003 * 109.99133 * 218.66920 * 10 9 7 36 36 H 1.09003 * 109.78473 * 97.50036 * 10 9 7 37 37 H 1.09000 * 109.47396 * 59.99696 * 14 12 11 38 38 H 1.09001 * 109.47080 * 299.99119 * 14 12 11 39 39 H 0.96995 * 120.00136 * 180.02562 * 19 18 16 40 40 H 1.08999 * 110.36569 * 143.19470 * 24 11 10 41 41 H 1.09002 * 110.36078 * 265.40386 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1179 0.0018 0.0000 5 7 4.6068 0.9733 0.9876 6 6 4.2560 2.3448 0.5952 7 6 6.0557 0.8371 1.1874 8 1 6.5967 1.0479 0.2649 9 6 6.5470 1.7506 2.3414 10 6 7.8067 1.0192 2.8514 11 7 7.6918 -0.3873 2.4390 12 6 8.6033 -1.3519 2.6742 13 8 8.4003 -2.4844 2.2908 14 6 9.8745 -1.0230 3.4137 15 16 10.8846 -2.5168 3.5708 16 6 12.2652 -1.8616 4.4480 17 1 12.2877 -0.8156 4.7161 18 6 13.3267 -2.6884 4.7889 19 7 13.2995 -3.9632 4.4617 20 14 14.7939 -1.9922 5.7119 21 1 14.5815 -0.5433 5.9583 22 1 14.9430 -2.6988 7.0095 23 1 16.0236 -2.1808 4.9012 24 6 6.4116 -0.5691 1.7309 25 1 -0.3633 -0.7204 -0.7328 26 1 -0.3634 -0.2744 0.9904 27 1 -0.3634 0.9949 -0.2576 28 1 4.4810 0.2765 -0.9904 29 1 4.4822 -0.9927 0.2575 30 1 4.7625 2.5969 -0.3365 31 1 3.1776 2.4177 0.4538 32 1 4.5676 3.0374 1.3771 33 1 6.7993 2.7428 1.9671 34 1 5.7966 1.8138 3.1294 35 1 7.8606 1.0835 3.9382 36 1 8.6970 1.4643 2.4071 37 1 9.6300 -0.6441 4.4060 38 1 10.4301 -0.2648 2.8619 39 1 14.0411 -4.5410 4.7003 40 1 6.5297 -1.2749 0.9087 41 1 5.6426 -0.9168 2.4208 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188972747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:05 Heat of formation + Delta-G solvation = 23.077137 kcal Electronic energy + Delta-G solvation = -20695.511096 eV Core-core repulsion = 17510.226744 eV Total energy + Delta-G solvation = -3185.284352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.05861 -38.27183 -36.20751 -34.09338 -32.42381 -31.34999 -30.02051 -29.41518 -28.27815 -26.72924 -25.49410 -24.14190 -22.90342 -20.51655 -19.34682 -17.77243 -16.98389 -16.97134 -16.51100 -15.63864 -15.31146 -14.83327 -14.78615 -14.56195 -14.34845 -13.92325 -13.85293 -13.77373 -13.53298 -13.31119 -12.84415 -12.77147 -12.60820 -12.49752 -12.06718 -11.80203 -11.63561 -11.22737 -11.16143 -11.06588 -11.00666 -10.75331 -10.18775 -9.98047 -9.80167 -9.41231 -9.06876 -8.79028 -8.49715 -8.22171 -6.49551 -6.21181 -3.91713 2.29311 2.48360 2.89154 3.06927 3.21917 3.25920 3.31336 3.55615 3.73656 3.98583 4.17706 4.21634 4.45243 4.77211 4.85939 4.94081 5.02333 5.08587 5.12786 5.14210 5.17779 5.23470 5.27797 5.29795 5.37588 5.48965 5.54019 5.58929 5.59353 5.63568 5.73079 5.77750 5.85464 5.96072 6.15072 6.37921 6.55431 6.67274 7.40694 7.60364 7.67141 8.36057 8.56033 9.24150 10.86322 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.038329 B = 0.002495 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.336981 B =11219.329562 C =11774.653542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.184 4.184 3 C -0.177 4.177 4 C 0.163 3.837 5 N -0.528 5.528 6 C 0.025 3.975 7 C 0.068 3.932 8 H 0.063 0.937 9 C -0.121 4.121 10 C 0.104 3.896 11 N -0.626 5.626 12 C 0.549 3.451 13 O -0.515 6.515 14 C -0.146 4.146 15 S -0.062 6.062 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.115 3.885 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.076 0.924 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.073 14.889 -8.167 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.185 4.185 3 C -0.177 4.177 4 C 0.037 3.963 5 N -0.253 5.253 6 C -0.123 4.123 7 C -0.041 4.041 8 H 0.081 0.919 9 C -0.159 4.159 10 C -0.020 4.020 11 N -0.364 5.364 12 C 0.338 3.662 13 O -0.389 6.389 14 C -0.297 4.297 15 S 0.165 5.835 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.008 4.008 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.420 12.864 -8.265 26.318 hybrid contribution 1.551 1.998 0.281 2.545 sum -19.869 14.863 -7.984 26.065 Atomic orbital electron populations 1.18850 0.84680 1.02870 1.03124 1.22383 0.93849 1.01032 1.01258 1.21956 0.93141 1.01453 1.01174 1.19023 0.84953 0.97848 0.94481 1.61934 1.12719 1.04780 1.45827 1.22410 1.01544 0.88944 0.99438 1.22828 0.86946 0.96310 0.98048 0.91922 1.22694 0.97043 0.98107 0.98040 1.21996 0.98255 0.81417 1.00355 1.48420 1.19762 1.09605 1.58594 1.20030 0.83515 0.83669 0.79005 1.90709 1.77359 1.20081 1.50781 1.23501 0.96705 1.07419 1.02027 1.85410 1.17080 1.06480 1.74518 1.22901 1.04983 0.98202 1.42134 0.90862 1.25001 0.98206 0.94673 0.95770 1.70030 1.31827 1.04168 1.44243 0.86110 0.81151 0.79005 0.79185 1.19613 1.20558 1.20580 1.22111 0.86108 0.95627 0.96976 0.90246 0.90123 0.90336 0.92252 0.88018 0.95322 0.91195 0.90795 0.90091 0.89363 0.90922 0.91194 0.89235 0.89286 0.92237 0.90521 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.23 10.32 34.37 0.35 0.13 16 2 C -0.18 -1.76 14.13 -37.12 -0.52 -2.29 16 3 C -0.18 -1.83 12.38 -37.12 -0.46 -2.29 16 4 C 0.16 1.50 5.33 -6.61 -0.04 1.47 16 5 N -0.53 -4.83 4.64 -235.81 -1.09 -5.93 16 6 C 0.02 0.18 9.19 60.06 0.55 0.74 16 7 C 0.07 0.64 2.71 -65.57 -0.18 0.46 16 8 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 9 C -0.12 -1.00 5.39 -24.89 -0.13 -1.14 16 10 C 0.10 1.12 6.49 -3.06 -0.02 1.10 16 11 N -0.63 -9.25 3.33 -170.51 -0.57 -9.82 16 12 C 0.55 10.82 7.87 -10.99 -0.09 10.73 16 13 O -0.52 -12.16 16.12 5.56 0.09 -12.07 16 14 C -0.15 -3.03 5.35 36.01 0.19 -2.84 16 15 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 16 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 17 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 20 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.12 1.45 5.32 -2.53 -0.01 1.43 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.10 0.95 6.68 -51.93 -0.35 0.60 16 30 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.55 7.17 -51.92 -0.37 0.18 16 32 H 0.07 0.48 7.21 -51.93 -0.37 0.11 16 33 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 38 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 40 H 0.08 1.02 7.68 -51.93 -0.40 0.62 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -35.12 358.84 -9.35 -44.47 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -6.53 Total: -3.53 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.15 Total: -5.52 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: -0.93 Total: -41.31 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.12 -9.35 -44.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188972747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.544 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds