Wall clock time and date at job start Tue Mar 31 2020 04:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99586 * 2 1 4 4 C 1.53003 * 109.46918 * 95.00002 * 3 2 1 5 5 C 1.50694 * 120.00233 * 180.02562 * 2 1 3 6 6 N 1.46506 * 109.46993 * 94.99981 * 5 2 1 7 7 C 1.34777 * 119.99846 * 179.97438 * 6 5 2 8 8 O 1.21350 * 119.99865 * 359.97438 * 7 6 5 9 9 C 1.49449 * 119.99831 * 180.02562 * 7 6 5 10 10 O 1.21349 * 119.99754 * 359.97438 * 9 7 6 11 11 N 1.34772 * 119.99933 * 180.02562 * 9 7 6 12 12 C 1.47021 * 125.64937 * 359.94885 * 11 9 7 13 13 C 1.54370 * 107.28813 * 181.13182 * 12 11 9 14 14 C 1.55147 * 102.92092 * 22.14333 * 13 12 11 15 15 O 1.42905 * 111.00578 * 82.63751 * 14 13 12 16 16 C 1.50702 * 111.00308 * 206.45025 * 14 13 12 17 17 H 1.08002 * 120.00299 * 356.82421 * 16 14 13 18 18 C 1.37884 * 119.99942 * 176.53980 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.47423 * 125.64837 * 179.97438 * 11 9 7 25 25 H 1.07995 * 120.00556 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99761 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46980 * 215.00224 * 3 2 1 28 28 H 1.09003 * 109.47310 * 335.00513 * 3 2 1 29 29 H 1.08994 * 109.47476 * 299.99918 * 4 3 2 30 30 H 1.09003 * 109.46713 * 60.00145 * 4 3 2 31 31 H 1.09001 * 109.47272 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47346 * 334.99895 * 5 2 1 33 33 H 1.08997 * 109.47303 * 214.99747 * 5 2 1 34 34 H 0.96999 * 119.99794 * 359.97438 * 6 5 2 35 35 H 1.09001 * 109.88518 * 300.52094 * 12 11 9 36 36 H 1.09002 * 109.88165 * 61.68403 * 12 11 9 37 37 H 1.09001 * 110.70699 * 263.79361 * 13 12 11 38 38 H 1.09008 * 110.75075 * 140.51110 * 13 12 11 39 39 H 0.96701 * 113.99475 * 183.17547 * 15 14 13 40 40 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 41 41 H 1.08996 * 110.36708 * 36.99367 * 24 11 9 42 42 H 1.08999 * 110.36888 * 274.67114 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.4272 1.6840 1.4371 5 6 2.0635 -1.3050 -0.0006 6 7 2.4119 -1.6671 -1.3768 7 6 3.0936 -2.8035 -1.6226 8 8 3.4190 -3.5265 -0.7039 9 6 3.4495 -3.1726 -3.0264 10 8 3.1243 -2.4493 -3.9449 11 7 4.1306 -4.3092 -3.2722 12 6 4.5847 -5.2724 -2.2585 13 6 5.3416 -6.3955 -2.9993 14 6 5.7596 -5.7137 -4.3288 15 8 6.9547 -4.9489 -4.1586 16 6 5.9245 -6.7306 -5.4287 17 1 5.8033 -7.7822 -5.2146 18 6 6.2244 -6.3180 -6.7097 19 7 6.3721 -5.0374 -6.9704 20 14 6.4213 -7.5779 -8.0747 21 1 6.2064 -8.9406 -7.5252 22 1 5.4232 -7.3118 -9.1417 23 1 7.7902 -7.4828 -8.6425 24 6 4.5443 -4.7924 -4.6022 25 1 -0.5401 0.9352 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 2.9740 1.1990 -0.5894 28 1 1.4384 2.0855 -0.4342 29 1 1.5166 1.7902 2.0265 30 1 3.0522 0.9036 1.8713 31 1 2.9726 2.6277 1.4371 32 1 1.4386 -2.0856 0.4334 33 1 2.9742 -1.1990 0.5888 34 1 2.1520 -1.0889 -2.1110 35 1 5.2525 -4.7797 -1.5518 36 1 3.7259 -5.6887 -1.7317 37 1 4.6832 -7.2428 -3.1907 38 1 6.2194 -6.7080 -2.4334 39 1 7.2280 -4.4652 -4.9501 40 1 6.5834 -4.7472 -7.8716 41 1 4.8378 -3.9553 -5.2355 42 1 3.7371 -5.3572 -5.0686 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261474114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:02 Heat of formation + Delta-G solvation = -125.423227 kcal Electronic energy + Delta-G solvation = -24167.305311 eV Core-core repulsion = 20532.828629 eV Total energy + Delta-G solvation = -3634.476682 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.82869 -40.11289 -38.89972 -38.00014 -36.20902 -34.86838 -34.20788 -31.96300 -31.40048 -29.74729 -28.40799 -27.17292 -25.07080 -24.42011 -23.19436 -21.56651 -21.14177 -19.67484 -19.14491 -18.50926 -18.01152 -17.33463 -17.07534 -16.77772 -16.38392 -16.21235 -15.96848 -15.45282 -15.14638 -14.87578 -14.68826 -14.62372 -14.01210 -13.96559 -13.77473 -13.51685 -13.36956 -13.22194 -12.86949 -12.78658 -12.71664 -12.54047 -12.34766 -12.19911 -12.11587 -11.77234 -11.70081 -11.23992 -10.82013 -10.63652 -10.39376 -10.34567 -10.14434 -9.65106 -8.26160 -6.42683 0.31977 0.87921 1.42016 1.45994 1.54963 1.57272 2.10010 2.38034 2.59772 3.00002 3.33458 3.66241 3.76949 3.83023 4.06401 4.14412 4.31825 4.32119 4.46819 4.49521 4.60681 4.65350 4.72632 4.75823 4.94148 4.95433 5.05385 5.08346 5.10138 5.14349 5.14840 5.33108 5.37700 5.42890 5.60044 5.74613 5.81863 5.96551 6.05280 6.35559 6.59799 6.67080 6.89900 7.28003 7.35693 8.79964 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.032665 B = 0.003106 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.988139 B = 9012.497593 C = 9249.141220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.157 4.157 3 C -0.091 4.091 4 C -0.146 4.146 5 C 0.154 3.846 6 N -0.685 5.685 7 C 0.516 3.484 8 O -0.530 6.530 9 C 0.501 3.499 10 O -0.562 6.562 11 N -0.582 5.582 12 C 0.119 3.881 13 C -0.115 4.115 14 C 0.232 3.768 15 O -0.589 6.589 16 C -0.554 4.554 17 H 0.071 0.929 18 C 0.026 3.974 19 N -0.916 5.916 20 Si 0.967 3.033 21 H -0.264 1.264 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.104 3.896 25 H 0.122 0.878 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.417 0.583 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.376 0.624 40 H 0.271 0.729 41 H 0.056 0.944 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.375 9.371 13.668 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.158 4.158 3 C -0.128 4.128 4 C -0.203 4.203 5 C 0.033 3.967 6 N -0.338 5.338 7 C 0.297 3.703 8 O -0.407 6.407 9 C 0.285 3.715 10 O -0.442 6.442 11 N -0.314 5.314 12 C -0.003 4.003 13 C -0.153 4.153 14 C 0.192 3.808 15 O -0.397 6.397 16 C -0.592 4.592 17 H 0.089 0.911 18 C -0.174 4.174 19 N -0.555 5.555 20 Si 0.792 3.208 21 H -0.189 1.189 22 H -0.207 1.207 23 H -0.206 1.206 24 C -0.018 4.018 25 H 0.140 0.860 26 H 0.123 0.877 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.253 0.747 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.226 0.774 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.345 9.165 14.370 19.938 hybrid contribution 0.207 0.037 -2.008 2.019 sum -10.139 9.202 12.362 18.447 Atomic orbital electron populations 1.24113 0.94684 1.03477 0.96054 1.21680 0.95728 0.94325 1.04035 1.20634 0.99960 0.93879 0.98315 1.21729 1.01827 1.01402 0.95330 1.20527 0.99948 0.95051 0.81215 1.45821 1.54710 1.22150 1.11166 1.19801 0.79565 0.82765 0.88213 1.90721 1.53160 1.51258 1.45552 1.20238 0.79939 0.81284 0.90067 1.90699 1.55386 1.51238 1.46880 1.48690 1.51081 1.20566 1.11020 1.22176 0.98951 0.89341 0.89828 1.22738 1.00097 0.97010 0.95449 1.19877 0.80718 0.87421 0.92781 1.86104 1.44968 1.66937 1.41700 1.21801 1.49656 0.94030 0.93682 0.91088 1.25832 0.93306 0.97296 1.01009 1.69766 1.48062 1.15351 1.22341 0.85368 0.77572 0.79371 0.78475 1.18854 1.20735 1.20649 1.23094 0.98386 0.98209 0.82115 0.86024 0.87747 0.92124 0.89902 0.91892 0.93177 0.91836 0.90197 0.90712 0.74653 0.91293 0.89638 0.88838 0.89630 0.77418 0.91976 0.92582 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 13.88 67.78 0.94 -0.83 16 2 C -0.16 -2.35 4.67 -16.49 -0.08 -2.43 16 3 C -0.09 -1.23 6.10 29.85 0.18 -1.05 16 4 C -0.15 -1.75 9.89 71.98 0.71 -1.04 16 5 C 0.15 3.06 5.83 85.63 0.50 3.56 16 6 N -0.69 -17.51 5.54 -468.14 -2.59 -20.11 16 7 C 0.52 17.25 7.86 87.27 0.69 17.94 16 8 O -0.53 -18.77 14.12 -3.25 -0.05 -18.82 16 9 C 0.50 20.38 7.91 87.27 0.69 21.07 16 10 O -0.56 -25.08 16.73 -3.24 -0.05 -25.13 16 11 N -0.58 -24.92 3.33 -813.24 -2.70 -27.62 16 12 C 0.12 4.51 5.49 86.75 0.48 4.99 16 13 C -0.12 -4.59 6.13 31.80 0.19 -4.40 16 14 C 0.23 11.33 0.88 -10.14 -0.01 11.32 16 15 O -0.59 -30.66 13.17 -148.98 -1.96 -32.62 16 16 C -0.55 -28.50 8.26 25.60 0.21 -28.29 16 17 H 0.07 3.54 7.78 -2.91 -0.02 3.52 16 18 C 0.03 1.36 5.29 84.66 0.45 1.81 16 19 N -0.92 -49.00 10.69 21.45 0.23 -48.77 16 20 Si 0.97 41.20 29.54 68.60 2.03 43.23 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 C 0.10 5.07 5.50 86.86 0.48 5.55 16 25 H 0.12 1.07 7.99 -2.91 -0.02 1.05 16 26 H 0.10 1.23 7.99 -2.91 -0.02 1.21 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 0.93 7.99 -2.39 -0.02 0.91 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 1.55 7.99 -2.39 -0.02 1.53 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.42 10.11 7.94 -92.71 -0.74 9.38 16 35 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 36 H 0.09 2.90 7.70 -2.39 -0.02 2.88 16 37 H 0.09 3.41 8.03 -2.39 -0.02 3.39 16 38 H 0.09 3.24 8.14 -2.38 -0.02 3.23 16 39 H 0.38 20.35 7.26 -74.06 -0.54 19.81 16 40 H 0.27 13.83 8.31 -92.70 -0.77 13.06 16 41 H 0.06 3.07 7.47 -2.39 -0.02 3.05 16 42 H 0.06 2.89 8.03 -2.39 -0.02 2.87 16 Total: -1.00 -61.33 353.04 0.09 -61.24 By element: Atomic # 1 Polarization: 40.65 SS G_CDS: -0.24 Total: 40.41 kcal Atomic # 6 Polarization: 22.76 SS G_CDS: 5.43 Total: 28.19 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -5.07 Total: -96.50 kcal Atomic # 8 Polarization: -74.51 SS G_CDS: -2.06 Total: -76.58 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -61.33 0.09 -61.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261474114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.183 kcal (2) G-P(sol) polarization free energy of solvation -61.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds