Wall clock time and date at job start Tue Mar 31 2020 04:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 112.77974 * 2 1 4 4 C 1.53751 * 113.46701 * 229.09388 * 2 1 3 5 5 C 1.53492 * 83.26165 * 271.50212 * 4 2 1 6 6 N 1.47069 * 113.46659 * 130.77451 * 2 1 3 7 7 C 1.34775 * 136.06123 * 267.69512 * 6 2 1 8 8 O 1.21345 * 119.99864 * 359.63147 * 7 6 2 9 9 C 1.49447 * 120.00201 * 179.63321 * 7 6 2 10 10 O 1.21354 * 120.00068 * 0.02562 * 9 7 6 11 11 N 1.34775 * 120.00201 * 179.97438 * 9 7 6 12 12 C 1.47014 * 125.64849 * 359.96105 * 11 9 7 13 13 C 1.54320 * 107.27380 * 181.09352 * 12 11 9 14 14 C 1.55152 * 102.94118 * 22.18831 * 13 12 11 15 15 O 1.42903 * 111.00434 * 82.57714 * 14 13 12 16 16 C 1.50704 * 111.04128 * 206.40570 * 14 13 12 17 17 H 1.08003 * 119.99340 * 356.80762 * 16 14 13 18 18 C 1.37871 * 120.00138 * 176.79441 * 16 14 13 19 19 N 1.31511 * 120.00128 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99837 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47224 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47022 * 120.00381 * 20 18 16 23 23 H 1.48501 * 109.47272 * 240.00133 * 20 18 16 24 24 C 1.47430 * 125.64838 * 179.97438 * 11 9 7 25 25 H 1.09003 * 109.47807 * 308.72629 * 1 2 3 26 26 H 1.08996 * 109.47534 * 68.72890 * 1 2 3 27 27 H 1.09005 * 109.47446 * 188.72703 * 1 2 3 28 28 H 1.08995 * 109.47490 * 171.27453 * 3 2 1 29 29 H 1.09007 * 109.47070 * 291.27785 * 3 2 1 30 30 H 1.09003 * 109.47553 * 51.27067 * 3 2 1 31 31 H 1.09000 * 114.39526 * 157.93891 * 4 2 1 32 32 H 1.09004 * 114.26652 * 25.06417 * 4 2 1 33 33 H 1.08993 * 113.46906 * 218.98247 * 5 4 2 34 34 H 1.09006 * 113.52105 * 88.54689 * 5 4 2 35 35 H 1.09000 * 109.88210 * 300.50877 * 12 11 9 36 36 H 1.09006 * 109.88750 * 61.67443 * 12 11 9 37 37 H 1.09007 * 110.72261 * 263.83054 * 13 12 11 38 38 H 1.09000 * 110.72226 * 140.55729 * 13 12 11 39 39 H 0.96700 * 114.00311 * 186.35133 * 15 14 13 40 40 H 0.97002 * 119.99909 * 179.97438 * 19 18 16 41 41 H 1.08997 * 110.36336 * 36.99910 * 24 11 9 42 42 H 1.09002 * 110.45871 * 274.72392 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1223 1.4107 0.0000 4 6 2.1422 -0.9235 -1.0659 5 6 2.0338 -1.9774 0.0447 6 7 2.1156 -0.8810 1.0216 7 6 2.5366 -0.7450 2.2947 8 8 2.4698 0.3351 2.8437 9 6 3.0856 -1.9244 3.0303 10 8 3.1528 -3.0045 2.4811 11 7 3.5070 -1.7882 4.3032 12 6 3.4846 -0.5432 5.0846 13 6 4.0865 -0.8606 6.4697 14 6 4.9342 -2.1312 6.1973 15 8 6.2134 -1.7882 5.6606 16 6 5.0809 -2.9619 7.4462 17 1 4.6650 -2.6118 8.3794 18 6 5.7457 -4.1687 7.3973 19 7 6.2523 -4.5948 6.2610 20 14 5.9269 -5.1985 8.9452 21 1 5.2732 -4.5023 10.0823 22 1 5.2826 -6.5205 8.7385 23 1 7.3683 -5.3919 9.2453 24 6 4.0672 -2.8632 5.1424 25 1 -0.3635 0.6429 0.8017 26 1 -0.3634 0.3728 -0.9576 27 1 -0.3634 -1.0158 0.1559 28 1 3.1995 1.3524 0.1559 29 1 1.9192 1.8901 -0.9577 30 1 1.6703 1.9947 0.8017 31 1 3.1654 -0.6722 -1.3453 32 1 1.4949 -1.1092 -1.9231 33 1 2.8851 -2.6571 0.0827 34 1 1.0770 -2.4994 0.0573 35 1 4.0839 0.2184 4.5858 36 1 2.4579 -0.1948 5.1976 37 1 3.2990 -1.0704 7.1936 38 1 4.7186 -0.0414 6.8125 39 1 6.7410 -2.5499 5.3839 40 1 6.7204 -5.4438 6.2267 41 1 4.6842 -3.5311 4.5415 42 1 3.2679 -3.4219 5.6296 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261485087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:34 Heat of formation + Delta-G solvation = -94.596215 kcal Electronic energy + Delta-G solvation = -25078.628085 eV Core-core repulsion = 21445.488162 eV Total energy + Delta-G solvation = -3633.139923 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.16797 -40.92594 -39.17382 -38.79269 -36.13529 -34.23476 -32.75248 -31.98707 -30.57640 -29.75746 -28.42365 -27.65174 -25.55802 -24.00879 -23.76583 -21.66665 -21.32158 -19.29966 -19.14507 -18.34718 -17.68188 -17.35191 -17.07071 -16.76651 -16.45226 -16.28641 -15.60762 -15.41067 -14.89425 -14.73177 -14.70066 -14.43066 -14.03878 -13.63335 -13.51925 -13.38992 -13.28642 -13.07679 -12.92435 -12.86550 -12.62901 -12.54396 -12.53243 -12.37421 -12.22737 -12.18605 -12.13503 -11.32904 -11.25453 -10.73169 -10.51649 -10.33639 -9.94185 -9.64952 -8.27733 -6.44454 0.32977 1.10834 1.41597 1.44787 1.55878 2.08869 2.27437 2.39154 2.98215 3.08109 3.34207 3.73747 3.85702 3.93700 3.94740 4.02820 4.10848 4.25129 4.27868 4.41353 4.61285 4.67087 4.69759 4.71895 4.83344 4.85575 4.90764 4.93045 5.00841 5.06069 5.09951 5.13893 5.22296 5.28583 5.39250 5.39817 5.72298 6.01273 6.24161 6.37360 6.51049 6.64619 6.94158 7.25535 7.33401 8.78857 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.032011 B = 0.003792 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.486980 B = 7381.423258 C = 7775.335815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.145 3.855 3 C -0.144 4.144 4 C -0.123 4.123 5 C 0.093 3.907 6 N -0.622 5.622 7 C 0.535 3.465 8 O -0.536 6.536 9 C 0.502 3.498 10 O -0.557 6.557 11 N -0.585 5.585 12 C 0.122 3.878 13 C -0.115 4.115 14 C 0.233 3.767 15 O -0.588 6.588 16 C -0.555 4.555 17 H 0.071 0.929 18 C 0.028 3.972 19 N -0.917 5.917 20 Si 0.968 3.032 21 H -0.264 1.264 22 H -0.281 1.281 23 H -0.280 1.280 24 C 0.107 3.893 25 H 0.050 0.950 26 H 0.110 0.890 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.103 0.897 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.134 0.866 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.375 0.625 40 H 0.271 0.729 41 H 0.055 0.945 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.994 7.836 -14.536 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.063 3.937 3 C -0.202 4.202 4 C -0.161 4.161 5 C -0.028 4.028 6 N -0.358 5.358 7 C 0.319 3.681 8 O -0.414 6.414 9 C 0.286 3.714 10 O -0.437 6.437 11 N -0.317 5.317 12 C 0.000 4.000 13 C -0.152 4.152 14 C 0.193 3.807 15 O -0.396 6.396 16 C -0.593 4.593 17 H 0.089 0.911 18 C -0.173 4.173 19 N -0.556 5.556 20 Si 0.793 3.207 21 H -0.188 1.188 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.015 4.015 25 H 0.069 0.931 26 H 0.129 0.871 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.152 0.848 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.067 8.343 -14.328 19.934 hybrid contribution 0.697 -1.557 1.016 1.986 sum -10.370 6.786 -13.312 18.187 Atomic orbital electron populations 1.21983 0.90835 1.03034 1.04363 1.22609 0.95519 0.92559 0.83025 1.21903 1.00013 0.94676 1.03576 1.23587 1.03400 0.93067 0.96039 1.23305 1.03467 0.91829 0.84240 1.49988 1.58906 1.17440 1.09474 1.19414 0.79689 0.87830 0.81163 1.90689 1.56290 1.27823 1.66594 1.20278 0.80111 0.89271 0.81757 1.90662 1.56915 1.28829 1.67253 1.48707 1.58019 1.13702 1.11295 1.22111 1.01424 0.84991 0.91515 1.22726 0.98916 0.98213 0.95374 1.19873 0.80578 0.90969 0.89277 1.86110 1.30932 1.38147 1.84441 1.21799 1.37302 1.04566 0.95644 0.91087 1.25829 0.93797 0.98283 0.99420 1.69769 1.36954 1.22199 1.26668 0.85356 0.77832 0.78114 0.79418 1.18827 1.20630 1.20567 1.23071 0.96572 0.89654 0.92247 0.93092 0.87129 0.91548 0.93955 0.87822 0.93264 0.88438 0.84796 0.91133 0.87743 0.91620 0.90069 0.88828 0.89616 0.77504 0.91957 0.92668 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.27 71.98 0.67 -1.36 16 2 C 0.14 2.72 1.60 0.49 0.00 2.72 16 3 C -0.14 -2.75 8.73 71.98 0.63 -2.12 16 4 C -0.12 -1.67 7.63 31.01 0.24 -1.43 16 5 C 0.09 2.02 7.24 83.18 0.60 2.63 16 6 N -0.62 -17.67 3.37 -811.03 -2.73 -20.40 16 7 C 0.54 19.89 8.01 87.27 0.70 20.59 16 8 O -0.54 -20.99 14.33 -3.23 -0.05 -21.04 16 9 C 0.50 21.81 7.91 87.27 0.69 22.50 16 10 O -0.56 -25.93 15.46 -3.26 -0.05 -25.98 16 11 N -0.59 -26.35 3.33 -813.35 -2.71 -29.05 16 12 C 0.12 4.88 5.49 86.73 0.48 5.36 16 13 C -0.11 -4.75 6.13 31.78 0.19 -4.55 16 14 C 0.23 11.67 0.87 -10.14 -0.01 11.66 16 15 O -0.59 -31.31 13.15 -148.98 -1.96 -33.27 16 16 C -0.56 -29.15 8.26 25.60 0.21 -28.94 16 17 H 0.07 3.61 7.78 -2.91 -0.02 3.59 16 18 C 0.03 1.44 5.30 84.65 0.45 1.89 16 19 N -0.92 -49.74 10.72 21.44 0.23 -49.51 16 20 Si 0.97 41.67 29.54 68.60 2.03 43.69 16 21 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 C 0.11 5.34 5.51 86.86 0.48 5.82 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.93 7.02 -2.38 -0.02 0.92 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 1.35 8.13 -2.39 -0.02 1.33 16 32 H 0.13 0.78 8.11 -2.38 -0.02 0.76 16 33 H 0.07 1.85 7.39 -2.39 -0.02 1.83 16 34 H 0.10 1.88 7.28 -2.38 -0.02 1.86 16 35 H 0.07 2.69 7.58 -2.39 -0.02 2.67 16 36 H 0.08 2.97 7.69 -2.38 -0.02 2.95 16 37 H 0.09 3.55 8.03 -2.38 -0.02 3.53 16 38 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 39 H 0.38 20.68 7.32 -74.06 -0.54 20.14 16 40 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.05 3.09 7.47 -2.39 -0.02 3.08 16 42 H 0.06 2.90 8.03 -2.39 -0.02 2.88 16 Total: -1.00 -67.07 342.14 0.57 -66.50 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 0.49 Total: 34.28 kcal Atomic # 6 Polarization: 29.45 SS G_CDS: 5.33 Total: 34.77 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -5.21 Total: -98.96 kcal Atomic # 8 Polarization: -78.23 SS G_CDS: -2.06 Total: -80.29 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -67.07 0.57 -66.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261485087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.098 kcal (2) G-P(sol) polarization free energy of solvation -67.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds