Wall clock time and date at job start Tue Mar 31 2020 03:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47110 * 270.00352 * 3 2 1 5 5 H 1.48504 * 109.47044 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47158 * 150.00096 * 3 2 1 7 7 C 1.37875 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99529 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91711 * 56.10371 * 9 7 2 11 11 C 1.55151 * 111.00641 * 292.19405 * 9 7 2 12 12 C 1.54326 * 102.94313 * 206.42337 * 11 9 7 13 13 N 1.47021 * 107.27002 * 22.19392 * 12 11 9 14 14 C 1.34778 * 125.64744 * 181.08547 * 13 12 11 15 15 O 1.21282 * 119.99926 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99819 * 359.96801 * 14 13 12 17 17 C 1.53004 * 109.46723 * 179.97438 * 16 14 13 18 18 N 1.46507 * 109.47024 * 179.97438 * 17 16 14 19 19 C 1.46750 * 124.35288 * 269.72988 * 18 17 16 20 20 C 1.54662 * 105.38519 * 162.85377 * 19 18 17 21 21 C 1.54629 * 101.68154 * 25.76663 * 20 19 18 22 22 C 1.34424 * 124.34394 * 90.02598 * 18 17 16 23 23 O 1.21281 * 124.94277 * 0.43139 * 22 18 17 24 24 C 1.47421 * 108.70450 * 1.06211 * 13 12 11 25 25 H 0.96999 * 120.00046 * 359.97438 * 1 2 3 26 26 H 0.96708 * 113.99322 * 303.89498 * 10 9 7 27 27 H 1.09000 * 110.72429 * 324.79291 * 11 9 7 28 28 H 1.09003 * 110.71831 * 88.06413 * 11 9 7 29 29 H 1.08996 * 109.88384 * 262.77575 * 12 11 9 30 30 H 1.09002 * 110.00880 * 141.68666 * 12 11 9 31 31 H 1.08995 * 109.47201 * 299.99171 * 16 14 13 32 32 H 1.08996 * 109.47240 * 59.99690 * 16 14 13 33 33 H 1.08995 * 109.47243 * 299.99927 * 17 16 14 34 34 H 1.09003 * 109.47257 * 60.00284 * 17 16 14 35 35 H 1.09006 * 110.25107 * 281.98395 * 19 18 17 36 36 H 1.09007 * 110.24967 * 43.97987 * 19 18 17 37 37 H 1.08998 * 111.19102 * 267.59171 * 20 19 18 38 38 H 1.09000 * 110.85353 * 143.79352 * 20 19 18 39 39 H 1.09000 * 110.48100 * 216.31082 * 21 20 19 40 40 H 1.08993 * 110.48502 * 93.66862 * 21 20 19 41 41 H 1.09002 * 110.36865 * 217.03325 * 24 13 12 42 42 H 1.09001 * 110.37117 * 94.70643 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3509 -2.5684 -1.1082 11 6 0.4997 -2.7074 1.3408 12 6 0.3981 -4.2438 1.4450 13 7 1.4591 -4.8098 0.5991 14 6 1.6918 -6.1230 0.4044 15 8 2.5989 -6.4774 -0.3184 16 6 0.8249 -7.1508 1.0849 17 6 1.2978 -8.5535 0.6979 18 7 0.4554 -9.5528 1.3599 19 6 0.7364 -10.1292 2.6799 20 6 -0.5961 -10.7637 3.1426 21 6 -1.2882 -11.0586 1.7917 22 6 -0.6711 -10.0637 0.8337 23 8 -1.1263 -9.7700 -0.2515 24 6 2.2259 -3.7031 -0.0012 25 1 -0.4850 0.8400 0.0004 26 1 -0.2788 -1.8355 -1.1497 27 1 1.0755 -2.3016 2.1726 28 1 -0.4922 -2.2572 1.3011 29 1 -0.5769 -4.5759 1.0886 30 1 0.5412 -4.5578 2.4790 31 1 0.8963 -7.0283 2.1656 32 1 -0.2106 -7.0175 0.7717 33 1 1.2261 -8.6758 -0.3828 34 1 2.3333 -8.6871 1.0108 35 1 1.5127 -10.8905 2.6017 36 1 1.0424 -9.3477 3.3755 37 1 -1.1817 -10.0614 3.7359 38 1 -0.4154 -11.6842 3.6976 39 1 -2.3631 -10.8961 1.8704 40 1 -1.0781 -12.0786 1.4702 41 1 2.5186 -3.9536 -1.0209 42 1 3.1054 -3.4794 0.6027 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327169987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:17 Heat of formation + Delta-G solvation = -120.686444 kcal Electronic energy + Delta-G solvation = -24235.105475 eV Core-core repulsion = 20600.834195 eV Total energy + Delta-G solvation = -3634.271280 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.56438 -39.44757 -37.33495 -36.53891 -34.32393 -33.86158 -32.16057 -30.54939 -29.47551 -28.24284 -27.80499 -25.52006 -23.91079 -22.25164 -22.04619 -19.79478 -19.44803 -18.73547 -17.38785 -17.09000 -16.80889 -16.09056 -15.81841 -15.20956 -15.02972 -14.99630 -14.26831 -14.02494 -13.97354 -13.58590 -13.50192 -13.17173 -12.98908 -12.68004 -12.35998 -12.07789 -11.96473 -11.80614 -11.71207 -11.37414 -11.35294 -11.33843 -11.10818 -10.91640 -10.62965 -10.49788 -10.07130 -9.92735 -9.51448 -9.42599 -8.89404 -8.69934 -8.23479 -8.01512 -6.32326 -4.40242 2.43329 2.76898 3.03786 3.18371 3.25863 3.28643 3.61779 4.09332 4.15744 4.24120 4.48076 4.72924 4.87655 4.93014 4.98546 5.01916 5.17367 5.22958 5.35702 5.44648 5.47400 5.52868 5.62737 5.67578 5.78772 5.84943 5.92713 5.99386 6.25570 6.37107 6.42382 6.63125 6.84984 6.93628 6.96787 7.26958 7.29843 7.71072 7.96356 8.02737 8.10882 8.58138 8.63199 9.28937 9.46436 10.75392 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.034598 B = 0.002999 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.108183 B = 9332.824012 C = 9437.674185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.139 4.139 12 C 0.100 3.900 13 N -0.605 5.605 14 C 0.527 3.473 15 O -0.557 6.557 16 C -0.151 4.151 17 C 0.143 3.857 18 N -0.621 5.621 19 C 0.099 3.901 20 C -0.132 4.132 21 C -0.156 4.156 22 C 0.512 3.488 23 O -0.528 6.528 24 C 0.119 3.881 25 H 0.270 0.730 26 H 0.386 0.614 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.071 0.929 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.932 -17.474 10.695 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.178 4.178 12 C -0.023 4.023 13 N -0.338 5.338 14 C 0.315 3.685 15 O -0.437 6.437 16 C -0.192 4.192 17 C 0.021 3.979 18 N -0.355 5.355 19 C -0.024 4.024 20 C -0.170 4.170 21 C -0.196 4.196 22 C 0.300 3.700 23 O -0.404 6.404 24 C -0.003 4.003 25 H 0.080 0.920 26 H 0.238 0.762 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.458 -17.950 9.576 20.396 hybrid contribution 0.009 1.566 0.373 1.609 sum -1.448 -16.384 9.948 19.222 Atomic orbital electron populations 1.69561 1.06012 1.27787 1.50391 1.25001 0.95027 0.99604 0.93420 0.86388 0.79753 0.82270 0.78397 1.20360 1.21034 1.19698 1.21479 0.93789 0.90190 1.51909 0.91619 1.19589 0.86060 0.90832 0.82770 1.86113 1.50953 1.52769 1.49586 1.23205 1.03097 0.90008 1.01478 1.22161 0.90171 0.97203 0.92741 1.48611 1.33010 1.05011 1.47122 1.19934 0.84728 0.82062 0.81785 1.90667 1.33291 1.80133 1.39630 1.21954 1.01251 0.94215 1.01798 1.21108 0.93518 0.84540 0.98763 1.48381 1.25642 1.41670 1.19825 1.22150 0.97831 0.98278 0.84119 1.22634 0.95638 1.02077 0.96639 1.22339 1.02195 1.00120 0.94924 1.20975 0.80672 0.81644 0.86726 1.90763 1.64940 1.63054 1.21656 1.22397 0.94474 0.85297 0.98101 0.92043 0.76229 0.91328 0.89852 0.92380 0.92910 0.89131 0.88777 0.89029 0.89431 0.90893 0.90191 0.89832 0.89184 0.88048 0.87896 0.91042 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.01 10.79 55.43 0.60 -22.41 16 2 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 3 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.54 -13.84 8.25 -34.44 -0.28 -14.13 16 8 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 9 C 0.25 6.00 0.89 -89.62 -0.08 5.92 16 10 O -0.58 -15.21 13.18 -35.23 -0.46 -15.68 16 11 C -0.14 -2.95 5.64 -24.90 -0.14 -3.09 16 12 C 0.10 1.80 6.49 -3.06 -0.02 1.78 16 13 N -0.61 -12.02 3.33 -170.52 -0.57 -12.59 16 14 C 0.53 9.88 7.85 -10.99 -0.09 9.79 16 15 O -0.56 -12.06 16.24 5.56 0.09 -11.97 16 16 C -0.15 -2.12 5.22 -27.88 -0.15 -2.27 16 17 C 0.14 1.87 5.22 -4.04 -0.02 1.84 16 18 N -0.62 -6.71 2.93 -172.30 -0.51 -7.22 16 19 C 0.10 0.65 7.35 -3.03 -0.02 0.62 16 20 C -0.13 -0.64 7.19 -25.00 -0.18 -0.82 16 21 C -0.16 -1.13 6.86 -26.74 -0.18 -1.31 16 22 C 0.51 6.34 8.02 -10.86 -0.09 6.26 16 23 O -0.53 -9.16 17.59 5.56 0.10 -9.06 16 24 C 0.12 2.67 6.08 -2.53 -0.02 2.66 16 25 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 26 H 0.39 10.10 6.93 45.56 0.32 10.42 16 27 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 28 H 0.08 1.85 7.85 -51.93 -0.41 1.44 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.09 1.44 7.88 -51.93 -0.41 1.03 16 34 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.72 8.04 -51.93 -0.42 1.31 16 42 H 0.07 1.53 8.01 -51.93 -0.42 1.11 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -31.83 347.60 -7.83 -39.67 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.94 Total: 10.02 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -1.36 Total: 9.00 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.47 Total: -42.22 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.28 Total: -36.71 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.83 -7.83 -39.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327169987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.021 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds