Wall clock time and date at job start Tue Mar 31 2020 04:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47063 * 2 1 4 4 H 1.08999 * 115.54569 * 29.33689 * 3 2 1 5 5 C 1.52998 * 117.50202 * 243.62258 * 3 2 1 6 6 C 1.52995 * 117.49858 * 174.99868 * 3 2 1 7 7 H 1.09003 * 117.50102 * 359.97438 * 6 3 2 8 8 N 1.46503 * 117.49979 * 214.98163 * 6 3 2 9 9 C 1.34778 * 119.99989 * 154.99958 * 8 6 3 10 10 O 1.21349 * 120.00263 * 0.02562 * 9 8 6 11 11 C 1.49444 * 119.99817 * 179.97438 * 9 8 6 12 12 O 1.21345 * 120.00316 * 0.02562 * 11 9 8 13 13 N 1.34778 * 119.99817 * 180.02562 * 11 9 8 14 14 C 1.47422 * 125.65119 * 359.97438 * 13 11 9 15 15 C 1.54909 * 104.83564 * 155.90415 * 14 13 11 16 16 C 1.55152 * 101.58032 * 37.00513 * 15 14 13 17 17 O 1.42903 * 110.72100 * 82.86680 * 16 15 14 18 18 C 1.50703 * 110.71825 * 205.95483 * 16 15 14 19 19 H 1.07993 * 120.00249 * 357.56786 * 18 16 15 20 20 C 1.37877 * 119.99923 * 177.55974 * 18 16 15 21 21 N 1.31521 * 120.00053 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00236 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47095 * 90.00027 * 22 20 18 24 24 H 1.48504 * 109.47221 * 210.00342 * 22 20 18 25 25 H 1.48506 * 109.46864 * 330.00097 * 22 20 18 26 26 C 1.47027 * 125.65015 * 180.02562 * 13 11 9 27 27 H 1.08995 * 109.47339 * 59.99619 * 1 2 3 28 28 H 1.09003 * 109.46662 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46959 * 299.99841 * 1 2 3 30 30 H 1.09003 * 109.47474 * 240.00241 * 2 1 3 31 31 H 1.08995 * 109.47339 * 120.00381 * 2 1 3 32 32 H 1.08996 * 117.49883 * 145.02030 * 5 3 2 33 33 H 1.09006 * 117.49512 * 0.02562 * 5 3 2 34 34 H 0.96995 * 120.00127 * 335.00062 * 8 6 3 35 35 H 1.09002 * 110.36847 * 37.05670 * 14 13 11 36 36 H 1.09001 * 110.36336 * 274.74112 * 14 13 11 37 37 H 1.09005 * 111.00113 * 278.93173 * 15 14 13 38 38 H 1.08997 * 111.00248 * 155.08112 * 15 14 13 39 39 H 0.96700 * 114.00311 * 179.97438 * 17 16 15 40 40 H 0.97000 * 119.99959 * 179.97438 * 21 20 18 41 41 H 1.09003 * 109.87825 * 61.60851 * 26 13 11 42 42 H 1.09001 * 109.88209 * 300.44906 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3884 2.1715 0.4818 5 6 2.8440 1.9077 -1.2158 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7720 0.1966 8 7 4.0096 2.8285 0.8699 9 6 5.2312 2.8267 1.4394 10 8 5.9507 1.8557 1.3292 11 6 5.7001 4.0210 2.2056 12 8 4.9809 4.9922 2.3155 13 7 6.9219 4.0194 2.7747 14 6 7.8935 2.9120 2.7206 15 6 9.2723 3.5829 2.9405 16 6 8.9223 4.6809 3.9793 17 8 8.9064 4.1393 5.3016 18 6 9.8928 5.8302 3.8878 19 1 10.7170 5.7869 3.1913 20 6 9.7283 6.9372 4.6931 21 7 8.7248 6.9899 5.5416 22 14 10.9308 8.3622 4.5793 23 1 10.4500 9.3358 3.5665 24 1 11.0316 9.0317 5.9010 25 1 12.2669 7.8516 4.1799 26 6 7.5061 5.1215 3.5530 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.7212 2.9428 -1.5342 33 1 3.0092 1.1861 -2.0159 34 1 3.4348 3.6048 0.9578 35 1 7.8597 2.4248 1.7461 36 1 7.6916 2.1913 3.5131 37 1 9.6440 4.0242 2.0157 38 1 9.9914 2.8732 3.3494 39 1 8.6930 4.7854 5.9888 40 1 8.6093 7.7685 6.1084 41 1 6.8967 5.3156 4.4356 42 1 7.5668 6.0188 2.9372 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328314679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:49 Heat of formation + Delta-G solvation = -96.601194 kcal Electronic energy + Delta-G solvation = -24058.862011 eV Core-core repulsion = 20425.635145 eV Total energy + Delta-G solvation = -3633.226865 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.45919 -38.91215 -37.71783 -37.22322 -34.52429 -33.66707 -32.22394 -31.53831 -30.16961 -27.96146 -26.07103 -24.41501 -23.98800 -22.51908 -21.21124 -20.97040 -19.81213 -19.40039 -17.31674 -17.21358 -16.86629 -15.88217 -15.72779 -15.23655 -14.86732 -14.78770 -14.46957 -14.30506 -14.04488 -13.08696 -13.00619 -12.98711 -12.89587 -12.79839 -12.40501 -12.35805 -11.78271 -11.59636 -11.56193 -11.39665 -11.31795 -11.10982 -11.05471 -10.78669 -10.58130 -10.52498 -10.32930 -10.18201 -9.35087 -9.14805 -8.91829 -8.69302 -8.36488 -8.03659 -6.32507 -4.41299 1.70722 2.52024 3.19391 3.26999 3.30046 3.37901 3.70737 3.79710 4.24402 4.38371 4.49660 4.62764 4.66630 4.85121 4.95689 5.02462 5.15610 5.38593 5.49273 5.49591 5.61183 5.68392 5.75592 5.81095 5.82040 5.87482 6.01093 6.03594 6.19743 6.37126 6.50855 6.74268 6.79165 6.82516 7.15012 7.20751 7.31956 7.69705 7.83458 7.98392 8.00371 8.39557 8.62873 9.27360 9.37779 10.75181 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.034699 B = 0.002996 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.752361 B = 9342.939828 C = 9569.740797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.157 4.157 4 H 0.109 0.891 5 C -0.186 4.186 6 C 0.082 3.918 7 H 0.140 0.860 8 N -0.680 5.680 9 C 0.516 3.484 10 O -0.515 6.515 11 C 0.507 3.493 12 O -0.539 6.539 13 N -0.574 5.574 14 C 0.098 3.902 15 C -0.121 4.121 16 C 0.248 3.752 17 O -0.584 6.584 18 C -0.537 4.537 19 H 0.068 0.932 20 C 0.069 3.931 21 N -0.896 5.896 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.099 3.901 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.413 0.587 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.384 0.616 40 H 0.271 0.729 41 H 0.071 0.929 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.974 -10.432 -10.212 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.177 4.177 4 H 0.127 0.873 5 C -0.225 4.225 6 C -0.024 4.024 7 H 0.158 0.842 8 N -0.332 5.332 9 C 0.298 3.702 10 O -0.390 6.390 11 C 0.289 3.711 12 O -0.418 6.418 13 N -0.306 5.306 14 C -0.024 4.024 15 C -0.159 4.159 16 C 0.207 3.793 17 O -0.393 6.393 18 C -0.575 4.575 19 H 0.087 0.913 20 C -0.134 4.134 21 N -0.535 5.535 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.196 1.196 26 C -0.022 4.022 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.249 0.751 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.236 0.764 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.784 -11.037 -10.404 19.207 hybrid contribution 0.013 1.850 0.320 1.878 sum -11.771 -9.186 -10.084 18.017 Atomic orbital electron populations 1.21744 0.95290 1.01659 1.01977 1.21120 0.96094 0.93530 1.02370 1.22942 0.93563 0.98940 1.02243 0.87300 1.23642 1.03681 1.03084 0.92079 1.21783 0.94183 0.91137 0.95323 0.84230 1.45138 1.16938 1.18534 1.52579 1.20422 0.81853 0.88285 0.79636 1.90691 1.53887 1.35120 1.59266 1.19502 0.82344 0.87534 0.81759 1.90725 1.54449 1.35261 1.61336 1.48695 1.13482 1.19553 1.48828 1.22654 0.88325 0.88939 1.02470 1.22830 0.94977 0.98592 0.99501 1.19501 0.89008 0.89911 0.80851 1.86106 1.93647 1.41929 1.17648 1.21524 1.12228 1.01163 1.22577 0.91344 1.25098 0.95327 0.98524 0.94427 1.69640 1.29527 1.30918 1.23414 0.86373 0.81175 0.81618 0.77593 1.20410 1.20956 1.19635 1.23256 0.96838 0.87608 0.94486 0.92605 0.92630 0.92604 0.91536 0.91292 0.88310 0.87802 0.75083 0.89491 0.91312 0.90474 0.90264 0.76441 0.91893 0.91057 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.87 37.16 0.37 -0.56 16 2 C -0.09 -0.66 6.22 -26.73 -0.17 -0.83 16 3 C -0.16 -1.29 5.66 -90.62 -0.51 -1.80 16 4 H 0.11 0.87 8.07 -51.93 -0.42 0.45 16 5 C -0.19 -1.53 10.10 -26.73 -0.27 -1.80 16 6 C 0.08 0.86 6.15 -67.93 -0.42 0.45 16 7 H 0.14 1.59 7.40 -51.93 -0.38 1.20 16 8 N -0.68 -8.93 5.56 -54.24 -0.30 -9.24 16 9 C 0.52 8.67 7.86 -11.59 -0.09 8.58 16 10 O -0.51 -9.20 13.34 5.50 0.07 -9.13 16 11 C 0.51 10.12 7.91 -11.59 -0.09 10.03 16 12 O -0.54 -11.70 16.80 5.50 0.09 -11.60 16 13 N -0.57 -12.17 3.33 -171.03 -0.57 -12.74 16 14 C 0.10 1.91 6.05 -2.53 -0.02 1.89 16 15 C -0.12 -2.48 6.22 -24.59 -0.15 -2.64 16 16 C 0.25 6.00 0.86 -89.94 -0.08 5.92 16 17 O -0.58 -14.71 13.09 -35.23 -0.46 -15.17 16 18 C -0.54 -13.88 8.12 -34.44 -0.28 -14.16 16 19 H 0.07 1.74 7.77 -52.49 -0.41 1.33 16 20 C 0.07 1.79 5.26 -17.82 -0.09 1.69 16 21 N -0.90 -23.50 10.97 55.43 0.61 -22.89 16 22 Si 0.91 20.22 29.54 -169.99 -5.02 15.20 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 26 C 0.10 2.38 5.39 -3.07 -0.02 2.36 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.43 7.88 -51.93 -0.41 0.02 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.73 8.03 -51.93 -0.42 0.31 16 34 H 0.41 5.01 8.30 -40.82 -0.34 4.67 16 35 H 0.09 1.58 6.16 -51.93 -0.32 1.26 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 38 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.38 9.89 7.17 45.56 0.33 10.21 16 40 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 41 H 0.07 1.84 8.01 -51.93 -0.42 1.43 16 42 H 0.07 1.86 7.82 -51.93 -0.41 1.45 16 LS Contribution 349.59 15.07 5.27 5.27 Total: -1.00 -28.56 349.59 -7.83 -36.39 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -5.70 Total: 14.78 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -1.82 Total: 9.14 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -0.26 Total: -44.87 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.30 Total: -35.91 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.56 -7.83 -36.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328314679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.212 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds