Wall clock time and date at job start Tue Mar 31 2020 03:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 O 1.42897 * 110.64692 * 303.14291 * 9 7 2 11 11 C 1.55154 * 110.71987 * 66.48154 * 9 7 2 12 12 C 1.54917 * 101.58568 * 153.86167 * 11 9 7 13 13 N 1.47427 * 104.82632 * 322.98990 * 12 11 9 14 14 C 1.34775 * 125.64381 * 204.08758 * 13 12 11 15 15 O 1.21286 * 119.99799 * 180.02562 * 14 13 12 16 16 C 1.50700 * 120.00347 * 0.04483 * 14 13 12 17 17 C 1.53001 * 109.47376 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.29626 * 304.58762 * 17 16 14 19 19 C 1.52909 * 109.30143 * 185.00096 * 17 16 14 20 20 C 1.53344 * 108.67632 * 188.93480 * 19 17 16 21 21 C 1.53076 * 108.42545 * 67.52849 * 20 19 17 22 22 C 1.50178 * 109.89110 * 311.10174 * 21 20 19 23 23 O 1.21275 * 118.24536 * 197.55233 * 22 21 20 24 24 N 1.33354 * 123.50704 * 17.58054 * 22 21 20 25 25 C 1.47027 * 108.70715 * 24.12901 * 13 12 11 26 26 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 27 27 H 0.96702 * 113.99613 * 59.29686 * 10 9 7 28 28 H 1.09000 * 111.00807 * 271.93178 * 11 9 7 29 29 H 1.09000 * 111.00436 * 35.79026 * 11 9 7 30 30 H 1.08993 * 110.37188 * 204.15160 * 12 11 9 31 31 H 1.08999 * 110.36323 * 81.82318 * 12 11 9 32 32 H 1.08994 * 109.47017 * 300.00143 * 16 14 13 33 33 H 1.09004 * 109.47045 * 59.99654 * 16 14 13 34 34 H 1.08998 * 109.60345 * 308.69182 * 19 17 16 35 35 H 1.09002 * 109.60698 * 69.17925 * 19 17 16 36 36 H 1.08995 * 109.67982 * 187.26305 * 20 19 17 37 37 H 1.08999 * 109.67627 * 307.76690 * 20 19 17 38 38 H 1.09003 * 109.39734 * 71.23156 * 21 20 19 39 39 H 1.08999 * 109.39918 * 190.97315 * 21 20 19 40 40 H 0.97002 * 117.94586 * 177.76851 * 24 22 21 41 41 H 1.09003 * 109.87799 * 239.52349 * 25 13 12 42 42 H 1.08998 * 110.01222 * 118.42818 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 8 0.3707 -2.5677 1.1287 11 6 0.4694 -2.6876 -1.3217 12 6 0.3737 -4.2313 -1.4099 13 7 1.6614 -4.7198 -0.8841 14 6 2.2254 -5.9102 -1.1692 15 8 3.2928 -6.2090 -0.6768 16 6 1.5301 -6.8698 -2.1001 17 6 2.3764 -8.1352 -2.2535 18 1 3.3772 -7.8609 -2.5869 19 6 1.7308 -9.0521 -3.2931 20 6 2.4567 -10.4027 -3.2750 21 6 2.1636 -11.0916 -1.9398 22 6 2.3990 -10.1332 -0.8078 23 8 2.5307 -10.5860 0.3095 24 7 2.4705 -8.8110 -0.9655 25 6 2.2281 -3.6937 0.0035 26 1 -0.4850 0.8401 0.0004 27 1 -0.2878 -1.8600 1.1561 28 1 -0.5214 -2.2377 -1.2589 29 1 1.0281 -2.2821 -2.1652 30 1 0.2433 -4.5448 -2.4456 31 1 -0.4497 -4.5959 -0.7958 32 1 0.5550 -7.1320 -1.6897 33 1 1.3995 -6.4001 -3.0750 34 1 0.6789 -9.1989 -3.0483 35 1 1.8192 -8.6027 -4.2823 36 1 2.0969 -11.0238 -4.0952 37 1 3.5301 -10.2439 -3.3786 38 1 1.1253 -11.4230 -1.9237 39 1 2.8196 -11.9546 -1.8260 40 1 2.5925 -8.2646 -0.1733 41 1 3.2013 -3.3762 -0.3709 42 1 2.3309 -4.0900 1.0137 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328567923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:37 Heat of formation + Delta-G solvation = -159.076693 kcal Electronic energy + Delta-G solvation = -24529.695538 eV Core-core repulsion = 20893.759532 eV Total energy + Delta-G solvation = -3635.936006 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65108 -40.75979 -39.10999 -37.63035 -36.13072 -34.17039 -34.06447 -32.58784 -31.34969 -30.13206 -28.65131 -26.83931 -24.58127 -23.73486 -23.21970 -21.53586 -20.21790 -20.00412 -19.20580 -18.36447 -17.86849 -17.36792 -17.03692 -16.94125 -16.43272 -16.07112 -16.02632 -15.54976 -15.10090 -14.83055 -14.48281 -14.43375 -14.08511 -13.90215 -13.83534 -13.32323 -13.23623 -13.14400 -12.91445 -12.67297 -12.55262 -12.44017 -12.28508 -12.22025 -11.99569 -11.85940 -11.77409 -11.30999 -10.97639 -10.74140 -10.61903 -10.15577 -10.08997 -9.63494 -8.27535 -6.41012 1.38770 1.43750 1.53239 1.59590 1.62695 2.02957 2.35835 2.38464 2.98222 3.43630 3.60799 3.69612 3.84109 3.97583 4.00414 4.02303 4.21358 4.28233 4.32726 4.40803 4.55020 4.59550 4.67214 4.69442 4.74790 4.90708 4.93110 5.01734 5.12795 5.14841 5.17641 5.23442 5.40535 5.45115 5.52605 5.72807 5.75389 6.05542 6.45359 6.58519 6.65830 7.10731 7.20620 7.29935 7.42892 8.79054 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.035579 B = 0.003152 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.801972 B = 8881.577290 C = 9013.414224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.038 3.962 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.273 1.273 6 H -0.280 1.280 7 C -0.563 4.563 8 H 0.050 0.950 9 C 0.233 3.767 10 O -0.596 6.596 11 C -0.129 4.129 12 C 0.104 3.896 13 N -0.611 5.611 14 C 0.510 3.490 15 O -0.593 6.593 16 C -0.139 4.139 17 C 0.151 3.849 18 H 0.073 0.927 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.129 4.129 22 C 0.506 3.494 23 O -0.625 6.625 24 N -0.711 5.711 25 C 0.128 3.872 26 H 0.273 0.727 27 H 0.382 0.618 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.118 0.882 39 H 0.102 0.898 40 H 0.388 0.612 41 H 0.057 0.943 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 -15.035 -14.237 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.164 4.164 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.198 1.198 6 H -0.206 1.206 7 C -0.601 4.601 8 H 0.068 0.932 9 C 0.193 3.807 10 O -0.406 6.406 11 C -0.168 4.168 12 C -0.017 4.017 13 N -0.343 5.343 14 C 0.302 3.698 15 O -0.475 6.475 16 C -0.178 4.178 17 C 0.046 3.954 18 H 0.091 0.909 19 C -0.163 4.163 20 C -0.155 4.155 21 C -0.168 4.168 22 C 0.295 3.705 23 O -0.509 6.509 24 N -0.360 5.360 25 C 0.004 3.996 26 H 0.082 0.918 27 H 0.233 0.767 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.165 0.835 34 H 0.107 0.893 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.223 0.777 41 H 0.076 0.924 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.051 -16.022 -13.540 21.077 hybrid contribution 0.439 2.208 1.081 2.497 sum -1.612 -13.814 -12.459 18.672 Atomic orbital electron populations 1.69633 1.06498 1.28424 1.50039 1.25573 0.95885 1.01907 0.93011 0.85494 0.78690 0.79407 0.77923 1.20194 1.19790 1.20586 1.21789 0.93373 0.91966 1.52988 0.93215 1.19621 0.86686 0.90488 0.83932 1.86098 1.49977 1.55378 1.49172 1.23103 1.01449 0.93379 0.98837 1.22558 0.84187 0.94708 1.00279 1.48762 1.22972 1.16270 1.46269 1.21296 0.85065 0.81081 0.82405 1.90670 1.24416 1.76521 1.55843 1.22201 1.00519 0.93597 1.01506 1.21004 0.99727 0.91193 0.83438 0.90890 1.22017 1.00614 0.94617 0.99053 1.21683 1.01381 0.96330 0.96144 1.21709 1.05850 0.97089 0.92148 1.21174 0.74607 0.83615 0.91113 1.90717 1.53998 1.77413 1.28780 1.45979 1.71658 1.06905 1.11492 1.21753 0.96881 0.88353 0.92581 0.91763 0.76668 0.90555 0.91948 0.86960 0.91203 0.86564 0.83454 0.89256 0.86421 0.87106 0.91528 0.86381 0.87981 0.77677 0.92450 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.22 10.72 21.45 0.23 -44.99 16 2 C 0.04 1.89 5.29 84.66 0.45 2.34 16 3 Si 0.96 40.80 29.54 68.60 2.03 42.83 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.56 -29.43 8.21 25.60 0.21 -29.22 16 8 H 0.05 2.67 7.53 -2.92 -0.02 2.65 16 9 C 0.23 11.05 0.85 -10.35 -0.01 11.04 16 10 O -0.60 -30.12 13.08 -148.98 -1.95 -32.06 16 11 C -0.13 -5.10 5.67 31.99 0.18 -4.92 16 12 C 0.10 3.14 6.69 86.86 0.58 3.72 16 13 N -0.61 -21.67 3.33 -811.76 -2.70 -24.37 16 14 C 0.51 16.24 7.49 87.66 0.66 16.90 16 15 O -0.59 -23.60 14.82 -3.05 -0.05 -23.65 16 16 C -0.14 -2.52 4.36 29.85 0.13 -2.39 16 17 C 0.15 2.71 2.65 45.10 0.12 2.83 16 18 H 0.07 1.49 7.96 -2.39 -0.02 1.47 16 19 C -0.13 -1.07 5.30 30.68 0.16 -0.90 16 20 C -0.12 -1.03 6.03 30.74 0.19 -0.85 16 21 C -0.13 -1.91 6.03 29.71 0.18 -1.73 16 22 C 0.51 13.55 7.71 87.71 0.68 14.23 16 23 O -0.63 -23.56 17.78 -3.01 -0.05 -23.61 16 24 N -0.71 -18.53 5.00 -446.65 -2.23 -20.77 16 25 C 0.13 5.74 6.22 86.73 0.54 6.28 16 26 H 0.27 12.89 8.31 -92.71 -0.77 12.12 16 27 H 0.38 19.38 7.05 -74.06 -0.52 18.86 16 28 H 0.08 3.16 7.77 -2.39 -0.02 3.14 16 29 H 0.06 2.51 8.04 -2.39 -0.02 2.49 16 30 H 0.11 2.29 7.48 -2.39 -0.02 2.27 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.15 1.60 7.85 -2.38 -0.02 1.58 16 34 H 0.09 0.60 8.11 -2.39 -0.02 0.58 16 35 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.07 0.69 8.13 -2.39 -0.02 0.67 16 38 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.39 12.84 6.84 -92.71 -0.63 12.21 16 41 H 0.06 2.69 7.63 -2.39 -0.02 2.67 16 42 H 0.04 1.77 8.07 -2.39 -0.02 1.75 16 Total: -1.00 -71.58 337.70 -0.78 -72.36 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: -0.11 Total: 36.94 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 4.06 Total: 17.32 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -4.70 Total: -90.13 kcal Atomic # 8 Polarization: -77.27 SS G_CDS: -2.05 Total: -79.32 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -71.58 -0.78 -72.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328567923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.720 kcal (2) G-P(sol) polarization free energy of solvation -71.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds