Wall clock time and date at job start Tue Mar 31 2020 03:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00302 * 2 1 4 4 H 1.48490 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46850 * 299.99679 * 3 2 1 6 6 H 1.48505 * 109.47080 * 59.99368 * 3 2 1 7 7 C 1.37874 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99859 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00199 * 0.02562 * 7 2 1 10 10 O 1.42904 * 110.64176 * 298.31263 * 9 7 2 11 11 C 1.55159 * 110.87287 * 175.06352 * 9 7 2 12 12 C 1.55129 * 101.48377 * 205.89965 * 11 9 7 13 13 N 1.47421 * 104.72458 * 37.29063 * 12 11 9 14 14 C 1.34784 * 125.64843 * 155.81647 * 13 12 11 15 15 O 1.21346 * 119.99779 * 179.69479 * 14 13 12 16 16 C 1.49454 * 119.99872 * 359.69371 * 14 13 12 17 17 O 1.21351 * 119.99937 * 0.02562 * 16 14 13 18 18 N 1.34774 * 119.99866 * 179.97438 * 16 14 13 19 19 C 1.46499 * 119.99969 * 180.02562 * 18 16 14 20 20 C 1.52992 * 109.47271 * 179.97438 * 19 18 16 21 21 C 1.53780 * 113.61497 * 274.13240 * 20 19 18 22 22 C 1.53956 * 87.01914 * 220.04718 * 21 20 19 23 23 C 1.53777 * 87.11075 * 25.36290 * 22 21 20 24 24 C 1.47018 * 108.70379 * 335.55582 * 13 12 11 25 25 H 0.97006 * 119.99544 * 0.02562 * 1 2 3 26 26 H 0.96691 * 114.00098 * 61.67786 * 10 9 7 27 27 H 1.09004 * 111.00410 * 324.13694 * 11 9 7 28 28 H 1.09000 * 111.00432 * 87.98953 * 11 9 7 29 29 H 1.09005 * 110.49746 * 278.45477 * 12 11 9 30 30 H 1.08997 * 110.34301 * 156.05884 * 12 11 9 31 31 H 0.96999 * 120.00050 * 359.97438 * 18 16 14 32 32 H 1.09004 * 109.46684 * 300.00019 * 19 18 16 33 33 H 1.08997 * 109.47627 * 59.99350 * 19 18 16 34 34 H 1.09004 * 112.84833 * 45.32993 * 20 19 18 35 35 H 1.09000 * 113.61121 * 334.56666 * 21 20 19 36 36 H 1.09000 * 113.61596 * 105.47147 * 21 20 19 37 37 H 1.09001 * 113.53966 * 270.80573 * 22 21 20 38 38 H 1.09004 * 113.74330 * 139.94461 * 22 21 20 39 39 H 1.08997 * 113.61182 * 220.08844 * 23 22 21 40 40 H 1.08994 * 113.61379 * 89.19079 * 23 22 21 41 41 H 1.09010 * 109.88204 * 120.70275 * 24 13 12 42 42 H 1.09004 * 109.88434 * 241.70985 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4493 -2.6180 1.1776 11 6 2.2255 -3.7001 -0.1236 12 6 1.3109 -4.7746 -0.7682 13 7 0.4618 -4.0262 -1.7128 14 6 -0.1447 -4.5405 -2.8010 15 8 -0.8279 -3.8291 -3.5079 16 6 0.0243 -5.9869 -3.1371 17 8 0.7072 -6.6984 -2.4300 18 7 -0.5826 -6.5013 -4.2250 19 6 -0.4174 -7.9192 -4.5542 20 6 -1.2043 -8.2427 -5.8257 21 6 -2.6801 -8.5882 -5.5658 22 6 -2.5299 -9.6811 -6.6397 23 6 -1.0286 -9.6926 -6.3069 24 6 0.3811 -2.6274 -1.2676 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2286 -1.9338 1.2624 27 1 3.0655 -3.4561 -0.7740 28 1 2.5739 -4.0235 0.8573 29 1 0.6973 -5.2591 -0.0086 30 1 1.9107 -5.5130 -1.3002 31 1 -1.1294 -5.9328 -4.7896 32 1 0.6390 -8.1340 -4.7157 33 1 -0.7905 -8.5292 -3.7315 34 1 -1.0614 -7.5014 -6.6120 35 1 -2.8670 -8.9809 -4.5663 36 1 -3.3706 -7.7924 -5.8450 37 1 -2.7509 -9.3332 -7.6487 38 1 -3.0392 -10.6125 -6.3921 39 1 -0.3879 -9.7872 -7.1835 40 1 -0.7633 -10.3879 -5.5105 41 1 0.7625 -1.9677 -2.0471 42 1 -0.6531 -2.3704 -1.0382 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345839831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:15 Heat of formation + Delta-G solvation = -119.867234 kcal Electronic energy + Delta-G solvation = -24177.484562 eV Core-core repulsion = 20543.248806 eV Total energy + Delta-G solvation = -3634.235756 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.85550 -40.30924 -39.47631 -38.89431 -36.38995 -35.41068 -34.24742 -31.88590 -29.94241 -29.59580 -27.57038 -26.48630 -25.47464 -24.01012 -22.86597 -21.58732 -21.18193 -20.14664 -19.13610 -18.77942 -18.01003 -17.43717 -17.07974 -16.94676 -16.37280 -16.30758 -15.89259 -15.60509 -15.00607 -14.87389 -14.82121 -14.70211 -14.23290 -14.02554 -13.54487 -13.43714 -13.31167 -12.93007 -12.88505 -12.70543 -12.59471 -12.52755 -12.36863 -12.24916 -12.06630 -11.52109 -11.30124 -11.19483 -11.17379 -10.75128 -10.52677 -10.31030 -10.29355 -9.75480 -8.27622 -6.43227 0.31708 1.25882 1.41404 1.44577 1.55204 2.09777 2.36582 2.50688 2.98882 3.28648 3.65502 3.70105 3.77849 3.80214 3.99701 4.02715 4.14426 4.28953 4.34706 4.48335 4.59540 4.65442 4.70987 4.88654 4.89660 4.94163 4.95777 5.05924 5.09343 5.11576 5.12676 5.19828 5.30439 5.36318 5.43942 5.60590 5.72037 5.96785 6.06245 6.35650 6.60228 6.66914 6.90299 7.26140 7.34107 8.78975 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.034141 B = 0.003033 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.930043 B = 9229.937256 C = 9563.723785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.068 0.932 9 C 0.233 3.767 10 O -0.587 6.587 11 C -0.114 4.114 12 C 0.108 3.892 13 N -0.585 5.585 14 C 0.500 3.500 15 O -0.561 6.561 16 C 0.517 3.483 17 O -0.531 6.531 18 N -0.686 5.686 19 C 0.127 3.873 20 C -0.124 4.124 21 C -0.144 4.144 22 C -0.138 4.138 23 C -0.126 4.126 24 C 0.118 3.882 25 H 0.271 0.729 26 H 0.376 0.624 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.417 0.583 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 -17.106 -11.493 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.086 0.914 9 C 0.193 3.807 10 O -0.395 6.395 11 C -0.152 4.152 12 C -0.013 4.013 13 N -0.317 5.317 14 C 0.284 3.716 15 O -0.442 6.442 16 C 0.297 3.703 17 O -0.408 6.408 18 N -0.339 5.339 19 C 0.005 3.995 20 C -0.143 4.143 21 C -0.181 4.181 22 C -0.175 4.175 23 C -0.163 4.163 24 C -0.005 4.005 25 H 0.080 0.920 26 H 0.225 0.775 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.254 0.746 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.983 -17.710 -11.322 21.113 hybrid contribution -0.556 2.114 -0.192 2.194 sum -2.539 -15.596 -11.514 19.551 Atomic orbital electron populations 1.69801 1.07032 1.28497 1.50036 1.25811 0.95850 1.02768 0.93031 0.85397 0.79090 0.78918 0.77572 1.19005 1.20803 1.20380 1.21817 0.93963 0.91085 1.52480 0.91405 1.19728 0.87016 0.93513 0.80454 1.86119 1.51719 1.56295 1.45331 1.22864 0.97064 0.93725 1.01573 1.22693 0.92572 0.94540 0.91495 1.48751 1.46581 1.12335 1.24008 1.20307 0.80892 0.89253 0.81146 1.90697 1.40686 1.62103 1.50668 1.19744 0.80948 0.87116 0.82480 1.90688 1.39101 1.60794 1.50220 1.45781 1.49549 1.12599 1.25987 1.21702 1.01337 0.78751 0.97705 1.22870 0.96035 0.99243 0.96127 1.23087 0.95640 0.99422 0.99953 1.22830 0.96345 0.99182 0.99186 1.22875 0.97332 0.94389 1.01750 1.22758 1.00287 0.78836 0.98592 0.91982 0.77454 0.89556 0.89073 0.91321 0.87701 0.74573 0.90748 0.90976 0.87789 0.90188 0.91366 0.89503 0.90746 0.90263 0.89372 0.93495 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.04 10.96 21.45 0.24 -48.81 16 2 C 0.03 1.38 5.28 84.65 0.45 1.82 16 3 Si 0.96 41.72 29.54 68.60 2.03 43.75 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.56 -29.05 8.13 25.60 0.21 -28.84 16 8 H 0.07 3.47 7.78 -2.91 -0.02 3.45 16 9 C 0.23 11.42 0.85 -10.35 -0.01 11.41 16 10 O -0.59 -29.90 13.07 -148.98 -1.95 -31.84 16 11 C -0.11 -4.63 6.24 32.06 0.20 -4.43 16 12 C 0.11 4.13 6.07 86.93 0.53 4.66 16 13 N -0.58 -25.04 3.32 -812.92 -2.70 -27.75 16 14 C 0.50 20.05 7.91 87.27 0.69 20.74 16 15 O -0.56 -24.73 16.80 -3.23 -0.05 -24.79 16 16 C 0.52 16.79 7.86 87.27 0.69 17.47 16 17 O -0.53 -18.29 13.77 -3.25 -0.04 -18.34 16 18 N -0.69 -16.61 5.55 -464.42 -2.58 -19.19 16 19 C 0.13 2.31 5.50 86.38 0.47 2.78 16 20 C -0.12 -1.61 3.75 -10.27 -0.04 -1.65 16 21 C -0.14 -1.83 7.65 31.18 0.24 -1.59 16 22 C -0.14 -1.38 8.09 31.18 0.25 -1.13 16 23 C -0.13 -1.28 7.64 31.12 0.24 -1.04 16 24 C 0.12 5.83 5.23 86.73 0.45 6.28 16 25 H 0.27 13.85 8.31 -92.70 -0.77 13.08 16 26 H 0.38 19.75 7.45 -74.06 -0.55 19.19 16 27 H 0.09 3.31 8.05 -2.39 -0.02 3.29 16 28 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 29 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 30 H 0.10 3.66 6.14 -2.39 -0.01 3.64 16 31 H 0.42 9.38 7.94 -92.71 -0.74 8.65 16 32 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.07 1.36 7.87 -2.39 -0.02 1.34 16 34 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.08 1.09 7.92 -2.39 -0.02 1.07 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 0.86 8.10 -2.39 -0.02 0.84 16 41 H 0.05 2.52 7.82 -2.38 -0.02 2.50 16 42 H 0.04 2.38 7.92 -2.38 -0.02 2.36 16 Total: -1.00 -61.54 344.98 -0.94 -62.48 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: -0.24 Total: 37.99 kcal Atomic # 6 Polarization: 22.13 SS G_CDS: 4.37 Total: 26.49 kcal Atomic # 7 Polarization: -90.70 SS G_CDS: -5.04 Total: -95.74 kcal Atomic # 8 Polarization: -72.92 SS G_CDS: -2.05 Total: -74.97 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -61.54 -0.94 -62.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345839831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.387 kcal (2) G-P(sol) polarization free energy of solvation -61.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds