Wall clock time and date at job start Tue Mar 31 2020 03:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 119.99496 * 2 1 4 4 H 1.48498 * 109.46478 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47271 * 299.99855 * 3 2 1 6 6 H 1.48501 * 109.46995 * 60.00514 * 3 2 1 7 7 C 1.37868 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47284 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46991 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46809 * 179.97438 * 11 10 9 13 13 C 1.34782 * 119.99978 * 179.97438 * 12 11 10 14 14 O 1.21345 * 119.99956 * 0.02562 * 13 12 11 15 15 C 1.49445 * 120.00054 * 180.02562 * 13 12 11 16 16 O 1.21354 * 120.00031 * 0.02562 * 15 13 12 17 17 N 1.34772 * 120.00109 * 180.02562 * 15 13 12 18 18 C 1.48314 * 128.20655 * 0.02562 * 17 15 13 19 19 C 1.55809 * 104.46284 * 137.68584 * 18 17 15 20 20 H 1.09002 * 113.90800 * 262.43493 * 19 18 17 21 21 C 1.54509 * 108.89824 * 135.49125 * 19 18 17 22 22 O 1.44610 * 104.64248 * 224.83207 * 21 19 18 23 23 C 1.44610 * 104.49286 * 42.83684 * 22 21 19 24 24 C 1.54512 * 104.53560 * 317.10047 * 23 22 21 25 25 H 1.09002 * 112.86940 * 262.76072 * 24 23 22 26 26 C 1.48316 * 128.20726 * 179.97438 * 17 15 13 27 27 H 0.97002 * 119.99884 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47786 * 59.99510 * 9 7 2 29 29 H 1.09009 * 109.47078 * 299.99412 * 9 7 2 30 30 H 1.08994 * 109.47086 * 59.99256 * 10 9 7 31 31 H 1.09007 * 109.46675 * 299.98909 * 10 9 7 32 32 H 1.08994 * 109.47861 * 59.99672 * 11 10 9 33 33 H 1.09008 * 109.46918 * 299.98690 * 11 10 9 34 34 H 0.97000 * 120.00421 * 0.02562 * 12 11 10 35 35 H 1.09003 * 110.44615 * 256.74696 * 18 17 15 36 36 H 1.09001 * 110.44562 * 19.16229 * 18 17 15 37 37 H 1.09002 * 110.42465 * 106.00715 * 21 19 18 38 38 H 1.09000 * 110.42145 * 343.65636 * 21 19 18 39 39 H 1.08998 * 110.42478 * 75.86500 * 23 22 21 40 40 H 1.08999 * 110.42317 * 198.33721 * 23 22 21 41 41 H 1.09000 * 110.44619 * 103.25452 * 26 17 15 42 42 H 1.08998 * 110.55654 * 340.76543 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 6 1.4805 -4.9870 -0.0033 12 7 2.4325 -6.1005 -0.0037 13 6 1.9833 -7.3712 -0.0047 14 8 0.7903 -7.5930 -0.0058 15 6 2.9545 -8.5071 -0.0045 16 8 4.1476 -8.2853 -0.0029 17 7 2.5053 -9.7778 -0.0060 18 6 1.1008 -10.2542 -0.0086 19 6 1.0923 -11.4351 -1.0250 20 1 0.7493 -11.1575 -2.0217 21 6 0.2919 -12.6102 -0.4202 22 8 1.0994 -13.7793 -0.6893 23 6 2.4515 -13.3614 -0.3920 24 6 2.5653 -11.9490 -1.0081 25 1 3.0283 -11.9533 -1.9949 26 6 3.2984 -11.0311 -0.0067 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6242 -2.5575 0.8881 30 1 2.8715 -3.6046 0.8889 31 1 2.8727 -3.6039 -0.8911 32 1 0.8547 -5.0442 -0.8939 33 1 0.8529 -5.0455 0.8862 34 1 3.3862 -5.9233 -0.0024 35 1 0.8139 -10.5990 0.9849 36 1 0.4308 -9.4627 -0.3443 37 1 -0.6796 -12.6989 -0.9064 38 1 0.1676 -12.4728 0.6539 39 1 2.6086 -13.3200 0.6858 40 1 3.1694 -14.0377 -0.8562 41 1 3.3034 -11.4790 0.9870 42 1 4.3176 -10.8389 -0.3420 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352475055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:23 Heat of formation + Delta-G solvation = -110.413997 kcal Electronic energy + Delta-G solvation = -23382.023586 eV Core-core repulsion = 19748.197752 eV Total energy + Delta-G solvation = -3633.825833 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.21575 -40.05190 -38.40114 -36.71938 -35.57269 -33.39378 -31.91747 -31.28392 -31.12007 -27.51944 -26.67182 -26.00577 -23.92406 -23.05906 -22.05469 -20.83813 -20.31089 -19.69546 -17.86161 -17.27554 -16.85174 -16.45847 -16.31707 -16.04927 -15.75639 -15.45032 -14.86531 -14.54616 -14.47193 -14.38582 -13.84709 -13.60004 -13.15760 -12.93536 -12.67405 -12.34592 -11.98464 -11.89843 -11.84247 -11.55944 -11.48462 -11.27391 -11.16590 -10.95030 -10.79517 -10.59613 -10.34478 -9.93962 -9.73862 -9.37203 -9.24931 -9.14125 -9.02689 -8.40562 -6.05130 -4.08129 1.33970 2.09464 3.13166 3.28574 3.33802 3.36392 3.40317 3.46115 3.77918 4.21260 4.25482 4.39188 4.43149 4.48376 4.63643 4.68558 4.73617 5.08366 5.14852 5.20375 5.24122 5.30999 5.32149 5.51460 5.51707 5.54767 5.57012 5.64839 5.77662 6.03684 6.22559 6.25852 6.50272 6.67185 6.91422 6.93077 7.21738 7.59071 7.62351 7.70228 7.93154 7.99001 8.34365 8.98597 9.56471 11.06159 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.046731 B = 0.002248 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.028099 B =12451.359782 C =12928.282249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.690 5.690 13 C 0.505 3.495 14 O -0.522 6.522 15 C 0.530 3.470 16 O -0.521 6.521 17 N -0.600 5.600 18 C 0.091 3.909 19 C -0.134 4.134 20 H 0.106 0.894 21 C 0.050 3.950 22 O -0.372 6.372 23 C 0.050 3.950 24 C -0.137 4.137 25 H 0.104 0.896 26 C 0.108 3.892 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.411 0.589 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 -27.159 -0.418 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.008 4.008 12 N -0.341 5.341 13 C 0.285 3.715 14 O -0.400 6.400 15 C 0.313 3.687 16 O -0.396 6.396 17 N -0.334 5.334 18 C -0.031 4.031 19 C -0.153 4.153 20 H 0.124 0.876 21 C -0.027 4.027 22 O -0.291 6.291 23 C -0.027 4.027 24 C -0.156 4.156 25 H 0.122 0.878 26 C -0.014 4.014 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.247 0.753 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.277 -27.124 -0.473 27.326 hybrid contribution 0.950 1.233 0.075 1.558 sum 4.227 -25.891 -0.398 26.237 Atomic orbital electron populations 1.69976 1.06055 1.26624 1.50648 1.25032 0.94877 0.99360 0.95237 0.86514 0.80079 0.83671 0.77607 1.19728 1.20982 1.20989 1.21232 0.93095 0.90858 1.50840 0.92512 1.19039 0.93791 0.90795 0.97720 1.21933 0.99895 0.92921 1.01345 1.21863 0.91697 0.84649 1.02570 1.46089 1.12306 1.04881 1.70841 1.19875 0.88330 0.84333 0.78956 1.90646 1.16118 1.84059 1.49149 1.20001 0.88535 0.82660 0.77464 1.90773 1.16266 1.83828 1.48727 1.48828 1.09428 1.04095 1.71096 1.23316 0.83277 0.97586 0.98925 1.23979 0.94763 0.95917 1.00677 0.87572 1.23614 0.95403 0.83676 1.00046 1.89281 1.17457 1.33852 1.88492 1.23617 0.85294 0.94136 0.99661 1.23714 0.96240 0.95309 1.00376 0.87817 1.22609 0.96750 0.82954 0.99096 0.92961 0.96185 0.96189 0.92399 0.92415 0.91030 0.91020 0.75276 0.90209 0.86144 0.88442 0.91481 0.91566 0.88602 0.90087 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.11 1.91 5.67 -4.04 -0.02 1.88 16 12 N -0.69 -10.16 5.55 -60.73 -0.34 -10.50 16 13 C 0.51 7.41 7.87 -11.59 -0.09 7.32 16 14 O -0.52 -8.35 13.79 5.50 0.08 -8.27 16 15 C 0.53 7.13 7.99 -11.59 -0.09 7.04 16 16 O -0.52 -7.95 16.76 5.49 0.09 -7.86 16 17 N -0.60 -6.37 3.31 -168.65 -0.56 -6.93 16 18 C 0.09 0.80 6.23 -1.54 -0.01 0.79 16 19 C -0.13 -0.93 4.34 -86.72 -0.38 -1.31 16 20 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 21 C 0.05 0.32 7.15 37.95 0.27 0.59 16 22 O -0.37 -3.06 11.69 -35.23 -0.41 -3.47 16 23 C 0.05 0.29 7.13 37.95 0.27 0.56 16 24 C -0.14 -0.89 4.22 -87.50 -0.37 -1.25 16 25 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 26 C 0.11 0.83 6.59 -2.32 -0.02 0.82 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 34 H 0.41 5.58 7.94 -40.82 -0.32 5.25 16 35 H 0.08 0.60 7.21 -51.93 -0.37 0.22 16 36 H 0.12 1.29 5.42 -51.93 -0.28 1.01 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.37 7.19 -51.93 -0.37 0.00 16 39 H 0.07 0.32 7.16 -51.93 -0.37 -0.05 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.51 7.15 -51.93 -0.37 0.14 16 42 H 0.09 0.74 7.88 -51.93 -0.41 0.33 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -32.38 344.68 -7.63 -40.01 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.27 Total: 0.08 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.13 Total: 1.16 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.16 Total: -43.20 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.24 Total: -19.61 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.38 -7.63 -40.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352475055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.402 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds