Wall clock time and date at job start Tue Mar 31 2020 03:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40396 * 107.86945 * 179.88542 * 3 2 1 5 5 N 1.40196 * 125.97439 * 180.17767 * 4 3 2 6 6 C 1.34772 * 120.00000 * 0.27024 * 5 4 3 7 7 O 1.21595 * 120.00020 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00158 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00026 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47036 * 179.97438 * 9 8 6 11 11 H 1.08993 * 109.47196 * 305.00705 * 10 9 8 12 12 C 1.53004 * 109.46876 * 65.00009 * 10 9 8 13 13 C 1.53002 * 109.47071 * 184.99939 * 10 9 8 14 14 O 1.42896 * 109.46765 * 175.00327 * 13 10 9 15 15 N 1.31217 * 108.05370 * 0.38247 * 4 3 2 16 16 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 17 17 C 1.46496 * 125.97396 * 359.97438 * 16 2 1 18 18 C 1.50702 * 109.47079 * 90.00325 * 17 16 2 19 19 H 1.08002 * 120.00024 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00327 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99450 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00465 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47085 * 89.99684 * 22 20 18 24 24 H 1.48494 * 109.47187 * 210.00073 * 22 20 18 25 25 H 1.48505 * 109.46961 * 329.99820 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 29 29 H 1.08001 * 126.06108 * 0.02728 * 3 2 1 30 30 H 0.97004 * 120.00062 * 180.27001 * 5 4 3 31 31 H 0.97004 * 119.99904 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.47274 * 299.99650 * 9 8 6 33 33 H 1.08998 * 109.47280 * 60.00233 * 9 8 6 34 34 H 1.09008 * 109.46821 * 59.99863 * 12 10 9 35 35 H 1.09001 * 109.46957 * 179.97438 * 12 10 9 36 36 H 1.08995 * 109.47348 * 300.00154 * 12 10 9 37 37 H 1.09001 * 109.46968 * 295.00612 * 13 10 9 38 38 H 1.08995 * 109.46912 * 55.00167 * 13 10 9 39 39 H 0.96702 * 113.99833 * 179.97438 * 14 13 10 40 40 H 1.08997 * 109.47352 * 209.99655 * 17 16 2 41 41 H 1.09001 * 109.47699 * 330.00018 * 17 16 2 42 42 H 0.97001 * 120.00075 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6546 0.0027 5 7 4.7738 1.4751 0.0071 6 6 4.6371 2.8159 0.0146 7 8 3.5278 3.3139 0.0171 8 7 5.7298 3.6047 0.0183 9 6 5.5811 5.0621 0.0259 10 6 6.9645 5.7159 0.0294 11 1 7.5448 5.3337 0.8692 12 6 7.6861 5.3894 -1.2796 13 6 6.8115 7.2324 0.1631 14 8 8.1028 7.8325 0.2834 15 7 3.6337 -0.6576 -0.0041 16 7 2.3017 -1.0909 -0.0060 17 6 1.8501 -2.4845 -0.0130 18 6 1.6948 -2.9550 -1.4363 19 1 1.9105 -2.2830 -2.2538 20 6 1.2773 -4.2434 -1.6948 21 7 1.0151 -5.0619 -0.6994 22 14 1.0841 -4.8264 -3.4590 23 1 2.3650 -5.4118 -3.9299 24 1 0.0154 -5.8552 -3.5261 25 1 0.7183 -3.6756 -4.3234 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5187 28 1 -0.3633 0.8928 -0.5090 29 1 1.9720 2.1211 0.0004 30 1 5.6588 1.0779 0.0047 31 1 6.6148 3.2074 0.0159 32 1 5.0328 5.3761 -0.8623 33 1 5.0334 5.3668 0.9177 34 1 7.1057 5.7715 -2.1195 35 1 8.6715 5.8555 -1.2773 36 1 7.7950 4.3091 -1.3749 37 1 6.3087 7.6260 -0.7203 38 1 6.2205 7.4611 1.0498 39 1 8.0824 8.7952 0.3716 40 1 2.5849 -3.1072 0.4972 41 1 0.8916 -2.5586 0.5008 42 1 0.7218 -5.9684 -0.8812 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272125713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:28 Heat of formation + Delta-G solvation = -37.043061 kcal Electronic energy + Delta-G solvation = -23216.992562 eV Core-core repulsion = 19618.641083 eV Total energy + Delta-G solvation = -3598.351480 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.30052 -40.98839 -38.66318 -36.68836 -36.13216 -35.30179 -33.72965 -32.78556 -32.47612 -28.66823 -27.88428 -27.71962 -26.48519 -24.87736 -22.86051 -21.67795 -21.18703 -20.96064 -19.08228 -18.76477 -18.30861 -17.68843 -17.18406 -16.97122 -16.43118 -16.32614 -15.85561 -15.73280 -15.47438 -14.86090 -14.68047 -14.46171 -14.31450 -13.81201 -13.76130 -13.57819 -13.54680 -13.35248 -13.13622 -12.82428 -12.68495 -12.32109 -12.24130 -12.07137 -12.05063 -11.66074 -11.55708 -11.34212 -11.14716 -10.84387 -10.73103 -10.21163 -9.54791 -9.06616 -8.31731 -6.49563 1.02845 1.11798 1.38325 1.39122 1.50733 1.67432 2.08302 2.35774 2.39851 2.97428 3.06192 3.42456 3.85469 3.87153 3.93197 4.17479 4.22856 4.48510 4.51776 4.56256 4.65423 4.72620 4.78561 4.82107 4.88619 4.92715 4.97993 5.01983 5.03399 5.13864 5.22548 5.25984 5.37178 5.48134 5.54674 5.82090 5.86518 5.98581 6.28590 6.62591 6.74831 6.93165 7.13697 7.21304 7.42226 8.73874 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.030826 B = 0.002529 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.101031 B =11070.388864 C =11472.837526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.087 3.913 3 C -0.297 4.297 4 C 0.292 3.708 5 N -0.636 5.636 6 C 0.711 3.289 7 O -0.600 6.600 8 N -0.720 5.720 9 C 0.147 3.853 10 C -0.097 4.097 11 H 0.086 0.914 12 C -0.144 4.144 13 C 0.083 3.917 14 O -0.591 6.591 15 N -0.360 5.360 16 N -0.344 5.344 17 C 0.276 3.724 18 C -0.552 4.552 19 H 0.049 0.951 20 C 0.022 3.978 21 N -0.918 5.918 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.270 1.270 25 H -0.270 1.270 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.166 0.834 30 H 0.421 0.579 31 H 0.413 0.587 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.399 0.601 40 H 0.024 0.976 41 H 0.052 0.948 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.298 23.251 1.728 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C -0.328 4.328 4 C 0.036 3.964 5 N -0.288 5.288 6 C 0.411 3.589 7 O -0.478 6.478 8 N -0.378 5.378 9 C 0.023 3.977 10 C -0.116 4.116 11 H 0.105 0.895 12 C -0.201 4.201 13 C 0.004 3.996 14 O -0.399 6.399 15 N -0.191 5.191 16 N -0.126 5.126 17 C 0.157 3.843 18 C -0.591 4.591 19 H 0.067 0.933 20 C -0.179 4.179 21 N -0.556 5.556 22 Si 0.795 3.205 23 H -0.200 1.200 24 H -0.195 1.195 25 H -0.194 1.194 26 H 0.111 0.889 27 H 0.086 0.914 28 H 0.120 0.880 29 H 0.184 0.816 30 H 0.258 0.742 31 H 0.250 0.750 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.249 0.751 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.138 21.789 1.736 24.094 hybrid contribution 0.192 0.084 -0.640 0.674 sum 10.330 21.873 1.096 24.215 Atomic orbital electron populations 1.20497 0.85381 1.04349 1.04094 1.21747 0.96666 0.86435 0.99489 1.21401 0.89948 0.99871 1.21619 1.18954 0.88090 0.88906 1.00402 1.41375 1.07077 1.03831 1.76512 1.15763 0.85271 0.80079 0.77811 1.90843 1.25243 1.73925 1.57822 1.44837 1.07141 1.06629 1.79145 1.21193 0.97015 0.76897 1.02596 1.21245 0.94860 0.95123 1.00324 0.89533 1.21789 1.00714 1.01657 0.95989 1.22054 0.84709 0.91840 1.00959 1.86394 1.29472 1.27166 1.96903 1.77166 1.00083 1.09743 1.32114 1.48762 1.01665 1.07472 1.54744 1.19234 0.94899 0.72450 0.97739 1.21442 1.47478 0.98344 0.91789 0.93280 1.25737 0.93989 0.95913 1.02255 1.70002 1.45139 1.07363 1.33091 0.85356 0.78260 0.78183 0.78697 1.20008 1.19500 1.19446 0.88882 0.91432 0.87983 0.81628 0.74159 0.75006 0.91518 0.91329 0.92603 0.92031 0.92228 0.92360 0.92282 0.75123 0.95764 0.93007 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.89 9.89 71.24 0.70 -2.19 16 2 C 0.09 3.73 6.93 41.39 0.29 4.02 16 3 C -0.30 -12.45 9.52 22.10 0.21 -12.24 16 4 C 0.29 12.08 8.11 133.31 1.08 13.16 16 5 N -0.64 -19.57 5.45 -321.23 -1.75 -21.32 16 6 C 0.71 20.33 8.53 179.06 1.53 21.86 16 7 O -0.60 -21.51 13.47 -4.02 -0.05 -21.57 16 8 N -0.72 -13.13 5.29 -478.53 -2.53 -15.66 16 9 C 0.15 2.26 5.06 86.38 0.44 2.70 16 10 C -0.10 -1.11 2.66 -10.79 -0.03 -1.14 16 11 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 12 C -0.14 -1.72 8.96 71.98 0.65 -1.07 16 13 C 0.08 0.80 6.43 71.98 0.46 1.26 16 14 O -0.59 -6.46 13.19 -148.98 -1.97 -8.42 16 15 N -0.36 -17.16 12.59 -54.43 -0.69 -17.85 16 16 N -0.34 -16.90 3.59 -338.45 -1.22 -18.12 16 17 C 0.28 14.73 5.81 85.63 0.50 15.23 16 18 C -0.55 -31.22 9.39 25.60 0.24 -30.98 16 19 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 20 C 0.02 1.21 5.46 84.66 0.46 1.67 16 21 N -0.92 -52.06 13.29 21.45 0.28 -51.78 16 22 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.07 2.50 7.71 -2.39 -0.02 2.48 16 28 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 29 H 0.17 6.74 5.91 -2.91 -0.02 6.73 16 30 H 0.42 10.13 8.84 -92.71 -0.82 9.31 16 31 H 0.41 5.13 7.67 -92.71 -0.71 4.42 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.06 0.80 7.82 -2.39 -0.02 0.78 16 36 H 0.06 0.66 7.18 -2.39 -0.02 0.64 16 37 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 38 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.40 0.92 9.12 -74.06 -0.68 0.25 16 40 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 2.74 7.65 -2.39 -0.02 2.72 16 42 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -74.20 355.78 -0.51 -74.70 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -1.14 Total: 22.38 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 6.53 Total: 12.30 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -5.90 Total: -124.73 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -2.02 Total: -29.99 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -74.20 -0.51 -74.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272125713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.661 kcal (2) G-P(sol) polarization free energy of solvation -74.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds