Wall clock time and date at job start Tue Mar 31 2020 03:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35240 * 126.07610 * 2 1 4 4 C 1.40402 * 107.87194 * 180.13514 * 3 2 1 5 5 N 1.40185 * 125.97440 * 179.82987 * 4 3 2 6 6 C 1.34780 * 120.00265 * 359.71834 * 5 4 3 7 7 O 1.21592 * 119.99821 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00124 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00290 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47031 * 34.99871 * 9 8 6 11 11 C 1.52998 * 109.47022 * 275.00553 * 9 8 6 12 12 C 1.52992 * 109.47408 * 154.99725 * 9 8 6 13 13 C 1.52997 * 109.47482 * 295.00294 * 12 9 8 14 14 O 1.42898 * 109.47319 * 180.02562 * 13 12 9 15 15 N 1.31215 * 108.05201 * 359.56853 * 4 3 2 16 16 N 1.34969 * 126.06537 * 179.65986 * 2 1 3 17 17 C 1.46500 * 125.97857 * 359.97438 * 16 2 1 18 18 C 1.50699 * 109.47229 * 270.00635 * 17 16 2 19 19 H 1.07994 * 120.00306 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99855 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00160 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00066 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46811 * 59.99373 * 22 20 18 24 24 H 1.48492 * 109.47153 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46905 * 299.99744 * 22 20 18 26 26 H 1.08994 * 109.47535 * 270.34318 * 1 2 3 27 27 H 1.09008 * 109.46677 * 30.34159 * 1 2 3 28 28 H 1.08999 * 109.47809 * 150.33701 * 1 2 3 29 29 H 1.07999 * 126.06312 * 359.97177 * 3 2 1 30 30 H 0.97003 * 119.99720 * 179.71985 * 5 4 3 31 31 H 0.97003 * 119.99861 * 0.02562 * 8 6 5 32 32 H 1.09001 * 109.46974 * 179.97438 * 11 9 8 33 33 H 1.09000 * 109.46929 * 299.99091 * 11 9 8 34 34 H 1.09000 * 109.47812 * 59.99072 * 11 9 8 35 35 H 1.09002 * 109.47103 * 175.00047 * 12 9 8 36 36 H 1.08998 * 109.46862 * 55.00859 * 12 9 8 37 37 H 1.09002 * 109.47153 * 59.99783 * 13 12 9 38 38 H 1.09001 * 109.46832 * 299.99974 * 13 12 9 39 39 H 0.96701 * 113.99881 * 180.02562 * 14 13 12 40 40 H 1.09002 * 109.47098 * 30.00580 * 17 16 2 41 41 H 1.08995 * 109.46900 * 150.00251 * 17 16 2 42 42 H 0.97004 * 120.00241 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6544 -0.0032 5 7 4.7738 1.4749 -0.0075 6 6 4.6371 2.8157 -0.0148 7 8 3.5279 3.3137 -0.0180 8 7 5.7299 3.6045 -0.0185 9 6 5.5814 5.0619 -0.0259 10 1 4.7070 5.3410 0.5620 11 6 5.4049 5.5493 -1.4653 12 6 6.8301 5.7049 0.5809 13 6 6.9379 5.3164 2.0568 14 8 8.1039 5.9175 2.6236 15 7 3.6336 -0.6577 0.0044 16 7 2.3016 -1.0910 0.0065 17 6 1.8499 -2.4846 0.0153 18 6 1.6954 -2.9536 1.4391 19 1 1.9123 -2.2811 2.2557 20 6 1.2781 -4.2418 1.6991 21 7 1.0144 -5.0610 0.7046 22 14 1.0872 -4.8234 3.4640 23 1 0.0866 -3.9747 4.1593 24 1 0.6293 -6.2360 3.4728 25 1 2.3936 -4.7217 4.1627 26 1 -0.3634 0.0062 1.0276 27 1 -0.3633 0.8870 -0.5192 28 1 -0.3635 -0.8929 -0.5086 29 1 1.9721 2.1210 -0.0004 30 1 5.6587 1.0776 -0.0054 31 1 6.6148 3.2071 -0.0163 32 1 5.2939 6.6336 -1.4708 33 1 6.2793 5.2703 -2.0532 34 1 4.5153 5.0911 -1.8976 35 1 6.7588 6.7891 0.4948 36 1 7.7142 5.3555 0.0476 37 1 7.0093 4.2322 2.1429 38 1 6.0538 5.6659 2.5899 39 1 8.2362 5.7133 3.5595 40 1 0.8911 -2.5591 -0.4979 41 1 2.5844 -3.1077 -0.4949 42 1 0.7204 -5.9671 0.8876 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272136493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:33 Heat of formation + Delta-G solvation = -36.277062 kcal Electronic energy + Delta-G solvation = -23534.876171 eV Core-core repulsion = 19936.557908 eV Total energy + Delta-G solvation = -3598.318263 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.30452 -41.05507 -38.42863 -36.88729 -36.12351 -35.30440 -33.38454 -32.67507 -32.04511 -29.85918 -28.50699 -27.85118 -25.22791 -24.35754 -23.22123 -21.77207 -21.30949 -21.10562 -19.15966 -18.76615 -18.26807 -17.72361 -17.23127 -16.76335 -16.59007 -16.14827 -15.81626 -15.57091 -15.50970 -15.21792 -14.67408 -14.32019 -14.12446 -13.78852 -13.76332 -13.58250 -13.42882 -13.11688 -12.87958 -12.84279 -12.78673 -12.65139 -12.23217 -12.12523 -12.02777 -11.88786 -11.55426 -11.34708 -11.10929 -10.89514 -10.72653 -10.21136 -9.55023 -9.06464 -8.31688 -6.49746 1.03324 1.13681 1.38787 1.40291 1.49416 1.68536 2.09583 2.36010 2.41160 2.97646 3.13648 3.20923 3.87128 3.98485 4.04086 4.18427 4.24512 4.45047 4.48021 4.51279 4.60581 4.73031 4.77783 4.82365 4.90523 4.91269 4.96507 5.02912 5.04973 5.15318 5.17950 5.24877 5.35466 5.54381 5.57470 5.82060 5.88888 5.99318 6.28345 6.62201 6.76748 6.85218 7.14862 7.21169 7.45407 8.73801 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.002950 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.966603 B = 9488.612718 C =10212.905275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.086 3.914 3 C -0.297 4.297 4 C 0.292 3.708 5 N -0.636 5.636 6 C 0.712 3.288 7 O -0.599 6.599 8 N -0.719 5.719 9 C 0.165 3.835 10 H 0.077 0.923 11 C -0.160 4.160 12 C -0.117 4.117 13 C 0.071 3.929 14 O -0.592 6.592 15 N -0.361 5.361 16 N -0.344 5.344 17 C 0.276 3.724 18 C -0.554 4.554 19 H 0.050 0.950 20 C 0.023 3.977 21 N -0.919 5.919 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.275 1.275 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.166 0.834 30 H 0.420 0.580 31 H 0.412 0.588 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.397 0.603 40 H 0.052 0.948 41 H 0.024 0.976 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.219 20.695 -0.192 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.328 4.328 4 C 0.037 3.963 5 N -0.288 5.288 6 C 0.412 3.588 7 O -0.476 6.476 8 N -0.376 5.376 9 C 0.061 3.939 10 H 0.095 0.905 11 C -0.218 4.218 12 C -0.155 4.155 13 C -0.006 4.006 14 O -0.401 6.401 15 N -0.191 5.191 16 N -0.127 5.127 17 C 0.157 3.843 18 C -0.592 4.592 19 H 0.068 0.932 20 C -0.178 4.178 21 N -0.557 5.557 22 Si 0.795 3.205 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.200 1.200 26 H 0.101 0.899 27 H 0.124 0.876 28 H 0.087 0.913 29 H 0.184 0.816 30 H 0.258 0.742 31 H 0.249 0.751 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.246 0.754 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.932 20.072 -0.852 22.411 hybrid contribution 0.216 -0.796 1.256 1.503 sum 10.148 19.275 0.404 21.787 Atomic orbital electron populations 1.20461 0.85433 1.04159 1.03909 1.21734 0.96616 0.86479 0.99550 1.21393 0.89938 0.99834 1.21608 1.18961 0.88136 0.88900 1.00330 1.41412 1.06989 1.03896 1.76540 1.15807 0.85422 0.80001 0.77618 1.90840 1.25236 1.73834 1.57730 1.45103 1.07051 1.06478 1.78990 1.20838 0.98786 0.76755 0.97540 0.90510 1.22152 1.02004 1.02359 0.95329 1.21740 0.97193 1.02485 0.94044 1.22211 0.87317 0.96681 0.94417 1.86388 1.46193 1.76181 1.31326 1.77171 1.00022 1.09787 1.32160 1.48758 1.01700 1.07464 1.54753 1.19225 0.94873 0.72463 0.97740 1.21419 1.47582 0.98388 0.91797 0.93207 1.25736 0.93939 0.95868 1.02286 1.69996 1.45058 1.07404 1.33232 0.85411 0.78751 0.77667 0.78698 1.19002 1.19765 1.20048 0.89858 0.87617 0.91310 0.81624 0.74229 0.75104 0.89732 0.91188 0.94098 0.88520 0.89539 0.93352 0.93656 0.75358 0.93053 0.95824 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.76 10.11 71.24 0.72 -2.04 16 2 C 0.09 3.69 6.92 41.38 0.29 3.98 16 3 C -0.30 -12.30 9.52 22.11 0.21 -12.09 16 4 C 0.29 11.95 8.11 133.31 1.08 13.03 16 5 N -0.64 -19.15 5.45 -321.23 -1.75 -20.91 16 6 C 0.71 19.72 8.50 179.05 1.52 21.24 16 7 O -0.60 -20.95 13.13 -4.00 -0.05 -21.00 16 8 N -0.72 -12.46 4.53 -457.83 -2.08 -14.54 16 9 C 0.17 2.51 2.57 44.99 0.12 2.62 16 10 H 0.08 1.48 7.58 -2.39 -0.02 1.46 16 11 C -0.16 -2.31 9.48 71.98 0.68 -1.63 16 12 C -0.12 -1.30 5.12 30.59 0.16 -1.14 16 13 C 0.07 0.92 6.93 71.98 0.50 1.41 16 14 O -0.59 -8.08 13.66 -148.98 -2.04 -10.11 16 15 N -0.36 -17.05 12.59 -54.44 -0.69 -17.74 16 16 N -0.34 -16.84 3.59 -338.46 -1.22 -18.06 16 17 C 0.28 14.71 5.99 85.63 0.51 15.23 16 18 C -0.55 -31.20 9.39 25.60 0.24 -30.96 16 19 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 20 C 0.02 1.24 5.46 84.66 0.46 1.71 16 21 N -0.92 -52.09 13.29 21.45 0.28 -51.80 16 22 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 26 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 28 H 0.07 2.37 7.07 -2.39 -0.02 2.36 16 29 H 0.17 6.68 5.91 -2.91 -0.02 6.67 16 30 H 0.42 9.87 8.84 -92.71 -0.82 9.05 16 31 H 0.41 4.70 8.62 -92.71 -0.80 3.90 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.05 0.61 7.75 -2.39 -0.02 0.59 16 38 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.40 2.36 9.12 -74.06 -0.68 1.68 16 40 H 0.05 2.71 7.04 -2.39 -0.02 2.69 16 41 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -73.61 356.54 -0.24 -73.86 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -1.23 Total: 23.86 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 6.49 Total: 11.37 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -5.44 Total: -123.04 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -2.09 Total: -31.11 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -73.61 -0.24 -73.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272136493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.581 kcal (2) G-P(sol) polarization free energy of solvation -73.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds