Wall clock time and date at job start Tue Mar 31 2020 03:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34958 * 125.52506 * 2 1 4 4 C 1.41210 * 108.24307 * 179.74775 * 3 2 1 5 5 N 1.32930 * 126.37937 * 180.30951 * 4 3 2 6 6 C 1.33834 * 120.00217 * 0.13177 * 5 4 3 7 7 O 1.21841 * 119.99490 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00246 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99787 * 359.97438 * 8 6 5 10 10 C 1.46502 * 120.00097 * 179.97438 * 8 6 5 11 11 H 1.09000 * 109.46775 * 353.82114 * 10 8 6 12 12 C 1.53003 * 109.46829 * 233.82408 * 10 8 6 13 13 C 1.52990 * 109.47248 * 113.82316 * 10 8 6 14 14 O 1.42898 * 109.47374 * 66.09055 * 13 10 8 15 15 N 1.37427 * 107.24038 * 0.41501 * 4 3 2 16 16 H 0.96996 * 126.36104 * 179.84689 * 15 4 3 17 17 N 1.36453 * 125.52414 * 180.02562 * 2 1 3 18 18 C 1.46499 * 125.85258 * 0.02562 * 17 2 1 19 19 C 1.50701 * 109.47164 * 85.00152 * 18 17 2 20 20 H 1.07997 * 119.99726 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00177 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99861 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00253 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47027 * 60.00385 * 23 21 19 25 25 H 1.48497 * 109.46899 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47250 * 300.00493 * 23 21 19 27 27 H 1.09004 * 109.46653 * 269.99918 * 1 2 3 28 28 H 1.08999 * 109.47331 * 29.99682 * 1 2 3 29 29 H 1.08998 * 109.47246 * 150.00148 * 1 2 3 30 30 H 1.08003 * 125.87995 * 0.02562 * 3 2 1 31 31 H 1.08999 * 109.46740 * 95.12979 * 9 8 6 32 32 H 1.08996 * 109.47099 * 215.12821 * 9 8 6 33 33 H 1.08996 * 109.47164 * 335.12749 * 9 8 6 34 34 H 1.09006 * 109.46937 * 59.99607 * 12 10 8 35 35 H 1.08998 * 109.47163 * 179.97438 * 12 10 8 36 36 H 1.09005 * 109.46836 * 300.00084 * 12 10 8 37 37 H 1.09006 * 109.47170 * 186.08940 * 13 10 8 38 38 H 1.09002 * 109.47087 * 306.08479 * 13 10 8 39 39 H 0.96703 * 114.00034 * 179.97438 * 14 13 10 40 40 H 1.08997 * 109.46918 * 205.00127 * 18 17 2 41 41 H 1.09004 * 109.47112 * 324.99925 * 18 17 2 42 42 H 0.96996 * 120.00218 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2912 1.0984 0.0000 4 6 3.6396 0.6789 0.0059 5 7 4.7103 1.4666 0.0135 6 6 4.5626 2.7967 0.0189 7 8 3.4466 3.2856 0.0163 8 7 5.6482 3.5953 0.0261 9 6 6.9901 3.0074 0.0286 10 6 5.4864 5.0514 0.0313 11 1 4.4313 5.3001 -0.0821 12 6 6.2807 5.6569 -1.1278 13 6 6.0044 5.6173 1.3550 14 8 7.4165 5.4157 1.4393 15 7 3.6386 -0.6954 -0.0001 16 1 4.4193 -1.2710 -0.0002 17 7 2.2999 -1.1106 -0.0005 18 6 1.8321 -2.4988 -0.0016 19 6 1.5548 -2.9343 -1.4175 20 1 1.7111 -2.2457 -2.2346 21 6 1.1018 -4.2118 -1.6696 22 7 0.9110 -5.0503 -0.6744 23 14 0.7574 -4.7515 -3.4245 24 1 2.0022 -4.6474 -4.2276 25 1 0.2833 -6.1587 -3.4256 26 1 -0.2873 -3.8771 -4.0153 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.9468 2.1220 0.0004 31 1 7.3634 2.9499 -0.9939 32 1 7.6580 3.6289 0.6248 33 1 6.9471 2.0059 0.4566 34 1 5.9116 5.2537 -2.0709 35 1 6.1600 6.7402 -1.1242 36 1 7.3358 5.4081 -1.0143 37 1 5.7861 6.6841 1.4043 38 1 5.5144 5.1075 2.1846 39 1 7.8138 5.7512 2.2546 40 1 2.5985 -3.1408 0.4325 41 1 0.9181 -2.5747 0.5874 42 1 0.5919 -5.9489 -0.8517 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330714366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:05 Heat of formation + Delta-G solvation = 23.568229 kcal Electronic energy + Delta-G solvation = -24043.384342 eV Core-core repulsion = 20447.661165 eV Total energy + Delta-G solvation = -3595.723177 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.80633 -39.27850 -37.31428 -35.02643 -34.14929 -33.10498 -32.20695 -31.44279 -30.18079 -27.45551 -26.79872 -26.60298 -25.70756 -23.32831 -22.18590 -20.38885 -19.56715 -18.76496 -17.66046 -17.07268 -16.73662 -16.06383 -15.92282 -15.32439 -14.90135 -14.76354 -14.61556 -14.00293 -13.67824 -13.43481 -12.90442 -12.72298 -12.70288 -12.68222 -12.61144 -12.17597 -12.05969 -11.98761 -11.78717 -11.74584 -11.31893 -11.08149 -11.01842 -10.90624 -10.50624 -10.33293 -10.03348 -9.56398 -9.41059 -8.89542 -8.79081 -8.21281 -8.07671 -6.81232 -6.44675 -4.62897 1.83113 2.13121 3.08668 3.14182 3.16171 3.19539 3.53362 4.08078 4.21005 4.46514 4.72012 4.83559 4.95585 5.10279 5.16569 5.29942 5.49900 5.62168 5.63448 5.69602 5.83552 5.88354 5.94194 6.03283 6.06962 6.18935 6.20100 6.36706 6.40196 6.51605 6.58540 6.64260 6.83918 7.27106 7.38049 7.42899 7.52565 7.54943 7.73394 7.92366 8.32106 8.47353 8.56090 9.07461 9.68428 10.55056 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.029907 B = 0.003024 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.021080 B = 9257.238206 C = 9452.700753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.188 3.812 3 C -0.334 4.334 4 C 0.487 3.513 5 N -0.709 5.709 6 C 0.685 3.315 7 O -0.636 6.636 8 N -0.606 5.606 9 C 0.095 3.905 10 C 0.153 3.847 11 H 0.108 0.892 12 C -0.154 4.154 13 C 0.067 3.933 14 O -0.564 6.564 15 N -0.472 5.472 16 H 0.443 0.557 17 N -0.346 5.346 18 C 0.256 3.744 19 C -0.556 4.556 20 H 0.068 0.932 21 C 0.071 3.929 22 N -0.887 5.887 23 Si 0.908 3.092 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.182 0.818 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.371 0.629 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.039 13.797 4.137 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.062 3.938 3 C -0.367 4.367 4 C 0.234 3.766 5 N -0.473 5.473 6 C 0.386 3.614 7 O -0.519 6.519 8 N -0.341 5.341 9 C -0.048 4.048 10 C 0.048 3.952 11 H 0.126 0.874 12 C -0.212 4.212 13 C -0.011 4.011 14 O -0.369 6.369 15 N -0.195 5.195 16 H 0.290 0.710 17 N -0.133 5.133 18 C 0.140 3.860 19 C -0.594 4.594 20 H 0.087 0.913 21 C -0.134 4.134 22 N -0.524 5.524 23 Si 0.735 3.265 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.199 0.801 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.218 0.782 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.118 12.948 3.602 14.767 hybrid contribution -0.145 -0.292 -0.402 0.517 sum 5.972 12.657 3.201 14.356 Atomic orbital electron populations 1.20632 0.86606 1.04921 1.03494 1.21269 0.94380 0.85603 0.92558 1.22185 0.91175 1.00182 1.23125 1.18734 0.91118 0.82048 0.84678 1.68082 1.28338 1.03899 1.46949 1.16625 0.82680 0.85062 0.77034 1.90697 1.24245 1.78508 1.58481 1.46548 1.05889 1.03989 1.77722 1.21649 0.83310 0.99597 1.00293 1.20908 1.01043 0.80234 0.93002 0.87439 1.22006 1.01360 0.99930 0.97899 1.22685 0.81413 0.98551 0.98493 1.86510 1.21560 1.84211 1.44643 1.44374 0.98838 1.04925 1.71356 0.70958 1.47828 0.92583 1.08005 1.64851 1.19973 0.96357 0.70367 0.99346 1.21370 1.47574 0.98694 0.91765 0.91336 1.24944 0.94310 0.95796 0.98394 1.69891 1.44064 1.06941 1.31502 0.86366 0.79141 0.77793 0.83211 1.19869 1.20826 1.19663 0.89972 0.89450 0.89108 0.80122 0.95003 0.90373 0.90663 0.92633 0.92240 0.91533 0.93178 0.93421 0.78250 0.93241 0.91582 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 9.92 36.01 0.36 -1.08 16 2 C 0.19 3.46 6.92 -81.70 -0.57 2.90 16 3 C -0.33 -6.70 9.41 -39.62 -0.37 -7.07 16 4 C 0.49 10.03 8.07 -155.29 -1.25 8.78 16 5 N -0.71 -14.80 9.14 -15.79 -0.14 -14.95 16 6 C 0.69 14.29 8.19 -87.76 -0.72 13.57 16 7 O -0.64 -14.33 12.60 5.06 0.06 -14.27 16 8 N -0.61 -10.37 2.76 -179.90 -0.50 -10.86 16 9 C 0.09 1.43 9.30 59.85 0.56 1.98 16 10 C 0.15 2.16 3.15 -67.93 -0.21 1.94 16 11 H 0.11 1.66 6.92 -51.93 -0.36 1.30 16 12 C -0.15 -1.85 8.89 37.16 0.33 -1.52 16 13 C 0.07 0.75 6.84 37.15 0.25 1.00 16 14 O -0.56 -5.67 9.92 -35.23 -0.35 -6.02 16 15 N -0.47 -8.95 7.38 31.33 0.23 -8.72 16 16 H 0.44 7.41 8.96 -182.55 -1.64 5.77 16 17 N -0.35 -6.79 3.63 -58.04 -0.21 -7.00 16 18 C 0.26 5.49 5.71 -5.19 -0.03 5.46 16 19 C -0.56 -13.37 9.39 -34.44 -0.32 -13.70 16 20 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 21 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -22.63 13.29 55.43 0.74 -21.90 16 23 Si 0.91 19.40 29.54 -169.99 -5.02 14.38 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.09 1.42 7.79 -51.93 -0.40 1.01 16 30 H 0.18 3.79 5.77 -52.48 -0.30 3.49 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 1.06 5.22 -51.93 -0.27 0.79 16 33 H 0.07 1.22 7.14 -51.93 -0.37 0.84 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.81 6.93 -51.93 -0.36 0.45 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.37 2.08 9.12 45.56 0.42 2.50 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.42 7.88 -51.93 -0.41 1.01 16 42 H 0.27 6.62 8.31 -40.82 -0.34 6.29 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -30.57 347.83 -8.65 -39.22 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -6.63 Total: 10.97 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: -2.08 Total: 13.91 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: 0.12 Total: -63.42 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.29 Total: -20.29 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.57 -8.65 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330714366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.789 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds