Wall clock time and date at job start Tue Mar 31 2020 03:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34958 * 125.52506 * 2 1 4 4 C 1.41210 * 108.24307 * 179.74775 * 3 2 1 5 5 N 1.32930 * 126.37937 * 180.30951 * 4 3 2 6 6 C 1.33834 * 120.00217 * 0.13177 * 5 4 3 7 7 O 1.21841 * 119.99490 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00246 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99787 * 359.97438 * 8 6 5 10 10 C 1.46502 * 120.00097 * 179.97438 * 8 6 5 11 11 H 1.09000 * 109.46775 * 353.82114 * 10 8 6 12 12 C 1.53003 * 109.46829 * 233.82408 * 10 8 6 13 13 C 1.52990 * 109.47248 * 113.82316 * 10 8 6 14 14 O 1.42898 * 109.47374 * 66.09055 * 13 10 8 15 15 N 1.37427 * 107.24038 * 0.41501 * 4 3 2 16 16 H 0.96996 * 126.36104 * 179.84689 * 15 4 3 17 17 N 1.36453 * 125.52414 * 180.02562 * 2 1 3 18 18 C 1.46499 * 125.85258 * 0.02562 * 17 2 1 19 19 C 1.50701 * 109.47164 * 85.00152 * 18 17 2 20 20 H 1.07997 * 119.99726 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00177 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99861 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00253 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47027 * 60.00385 * 23 21 19 25 25 H 1.48497 * 109.46899 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47250 * 300.00493 * 23 21 19 27 27 H 1.09004 * 109.46653 * 269.99918 * 1 2 3 28 28 H 1.08999 * 109.47331 * 29.99682 * 1 2 3 29 29 H 1.08998 * 109.47246 * 150.00148 * 1 2 3 30 30 H 1.08003 * 125.87995 * 0.02562 * 3 2 1 31 31 H 1.08999 * 109.46740 * 95.12979 * 9 8 6 32 32 H 1.08996 * 109.47099 * 215.12821 * 9 8 6 33 33 H 1.08996 * 109.47164 * 335.12749 * 9 8 6 34 34 H 1.09006 * 109.46937 * 59.99607 * 12 10 8 35 35 H 1.08998 * 109.47163 * 179.97438 * 12 10 8 36 36 H 1.09005 * 109.46836 * 300.00084 * 12 10 8 37 37 H 1.09006 * 109.47170 * 186.08940 * 13 10 8 38 38 H 1.09002 * 109.47087 * 306.08479 * 13 10 8 39 39 H 0.96703 * 114.00034 * 179.97438 * 14 13 10 40 40 H 1.08997 * 109.46918 * 205.00127 * 18 17 2 41 41 H 1.09004 * 109.47112 * 324.99925 * 18 17 2 42 42 H 0.96996 * 120.00218 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2912 1.0984 0.0000 4 6 3.6396 0.6789 0.0059 5 7 4.7103 1.4666 0.0135 6 6 4.5626 2.7967 0.0189 7 8 3.4466 3.2856 0.0163 8 7 5.6482 3.5953 0.0261 9 6 6.9901 3.0074 0.0286 10 6 5.4864 5.0514 0.0313 11 1 4.4313 5.3001 -0.0821 12 6 6.2807 5.6569 -1.1278 13 6 6.0044 5.6173 1.3550 14 8 7.4165 5.4157 1.4393 15 7 3.6386 -0.6954 -0.0001 16 1 4.4193 -1.2710 -0.0002 17 7 2.2999 -1.1106 -0.0005 18 6 1.8321 -2.4988 -0.0016 19 6 1.5548 -2.9343 -1.4175 20 1 1.7111 -2.2457 -2.2346 21 6 1.1018 -4.2118 -1.6696 22 7 0.9110 -5.0503 -0.6744 23 14 0.7574 -4.7515 -3.4245 24 1 2.0022 -4.6474 -4.2276 25 1 0.2833 -6.1587 -3.4256 26 1 -0.2873 -3.8771 -4.0153 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.9468 2.1220 0.0004 31 1 7.3634 2.9499 -0.9939 32 1 7.6580 3.6289 0.6248 33 1 6.9471 2.0059 0.4566 34 1 5.9116 5.2537 -2.0709 35 1 6.1600 6.7402 -1.1242 36 1 7.3358 5.4081 -1.0143 37 1 5.7861 6.6841 1.4043 38 1 5.5144 5.1075 2.1846 39 1 7.8138 5.7512 2.2546 40 1 2.5985 -3.1408 0.4325 41 1 0.9181 -2.5747 0.5874 42 1 0.5919 -5.9489 -0.8517 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330714366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:04 Heat of formation + Delta-G solvation = 2.447814 kcal Electronic energy + Delta-G solvation = -24044.300192 eV Core-core repulsion = 20447.661165 eV Total energy + Delta-G solvation = -3596.639027 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.35549 -40.67156 -38.41715 -36.26757 -35.75486 -34.78807 -33.68144 -32.79884 -31.66825 -28.79901 -28.43074 -27.76438 -26.85554 -25.01365 -23.66228 -21.74608 -21.02568 -20.08530 -18.93204 -18.62442 -18.29547 -17.42958 -17.32989 -16.70966 -16.57826 -16.15074 -15.82830 -15.57684 -14.92539 -14.60764 -14.37273 -14.30197 -14.15872 -13.82920 -13.67247 -13.65302 -13.53235 -13.21102 -13.07134 -12.94847 -12.90276 -12.72194 -12.28785 -12.16718 -12.06550 -11.92985 -11.17058 -11.09277 -10.83204 -10.76575 -10.29724 -9.81439 -9.43312 -8.52303 -8.18521 -6.55302 0.28859 0.58922 1.39587 1.42047 1.49242 1.63083 2.20972 2.31856 2.91212 2.99155 3.11632 3.47568 3.71387 3.91593 4.16171 4.21771 4.34064 4.40380 4.47117 4.59399 4.62509 4.73915 4.77195 4.81788 4.84359 4.90063 4.96459 4.97936 5.10938 5.13101 5.26929 5.34757 5.39783 5.51992 5.71457 5.87662 6.00546 6.18687 6.34646 6.58334 6.85185 6.95562 7.03199 7.18356 8.11764 8.67189 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.029907 B = 0.003024 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.021080 B = 9257.238206 C = 9452.700753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.197 3.803 3 C -0.348 4.348 4 C 0.472 3.528 5 N -0.717 5.717 6 C 0.669 3.331 7 O -0.662 6.662 8 N -0.605 5.605 9 C 0.100 3.900 10 C 0.141 3.859 11 H 0.088 0.912 12 C -0.143 4.143 13 C 0.079 3.921 14 O -0.573 6.573 15 N -0.469 5.469 16 H 0.451 0.549 17 N -0.351 5.351 18 C 0.269 3.731 19 C -0.563 4.563 20 H 0.056 0.944 21 C 0.033 3.967 22 N -0.912 5.912 23 Si 0.962 3.038 24 H -0.277 1.277 25 H -0.278 1.278 26 H -0.267 1.267 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.172 0.828 31 H 0.035 0.965 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.039 0.961 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.032 0.968 39 H 0.393 0.607 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.295 14.777 4.074 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.071 3.929 3 C -0.381 4.381 4 C 0.219 3.781 5 N -0.482 5.482 6 C 0.369 3.631 7 O -0.547 6.547 8 N -0.340 5.340 9 C -0.043 4.043 10 C 0.037 3.963 11 H 0.106 0.894 12 C -0.201 4.201 13 C 0.000 4.000 14 O -0.382 6.382 15 N -0.192 5.192 16 H 0.299 0.701 17 N -0.138 5.138 18 C 0.152 3.848 19 C -0.601 4.601 20 H 0.075 0.925 21 C -0.170 4.170 22 N -0.550 5.550 23 Si 0.787 3.213 24 H -0.203 1.203 25 H -0.203 1.203 26 H -0.192 1.192 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.101 0.899 30 H 0.189 0.811 31 H 0.053 0.947 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.243 0.757 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.419 13.958 3.556 15.769 hybrid contribution -0.172 -0.534 -0.349 0.661 sum 6.247 13.424 3.206 15.150 Atomic orbital electron populations 1.20804 0.83749 1.05481 1.05334 1.21824 0.95965 0.84524 0.90598 1.22084 0.91338 1.00175 1.24488 1.18946 0.91580 0.82534 0.85004 1.68136 1.28542 1.04179 1.47300 1.16981 0.83388 0.85331 0.77354 1.90665 1.25391 1.78856 1.59831 1.46747 1.05585 1.05103 1.76516 1.21677 0.82652 0.99227 1.00741 1.21185 1.00724 0.78644 0.95782 0.89387 1.21923 1.00791 1.01332 0.96083 1.22441 0.81887 0.99809 0.95845 1.86412 1.20739 1.84682 1.46378 1.44345 0.98963 1.04600 1.71310 0.70064 1.47750 0.93031 1.07840 1.65194 1.19678 0.96104 0.70942 0.98045 1.21515 1.47400 0.98660 0.92574 0.92531 1.25571 0.94172 0.95871 1.01365 1.69955 1.44830 1.07258 1.32948 0.85536 0.78756 0.77598 0.79456 1.20259 1.20335 1.19161 0.87371 0.87325 0.89950 0.81058 0.94679 0.88392 0.92066 0.94204 0.89584 0.91307 0.90089 0.94944 0.75654 0.94111 0.91318 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.64 9.92 71.24 0.71 -1.93 16 2 C 0.20 7.14 6.92 41.09 0.28 7.43 16 3 C -0.35 -14.07 9.41 22.25 0.21 -13.86 16 4 C 0.47 19.72 8.07 133.95 1.08 20.81 16 5 N -0.72 -30.48 9.14 -322.54 -2.95 -33.43 16 6 C 0.67 28.38 8.19 179.35 1.47 29.85 16 7 O -0.66 -30.57 12.60 -4.80 -0.06 -30.63 16 8 N -0.60 -20.63 2.76 -841.25 -2.32 -22.96 16 9 C 0.10 2.94 9.30 127.77 1.19 4.13 16 10 C 0.14 3.85 3.15 44.99 0.14 3.99 16 11 H 0.09 2.74 6.92 -2.39 -0.02 2.73 16 12 C -0.14 -3.21 8.89 71.98 0.64 -2.57 16 13 C 0.08 1.60 6.84 71.98 0.49 2.09 16 14 O -0.57 -9.98 9.92 -148.98 -1.48 -11.46 16 15 N -0.47 -17.88 7.38 -54.78 -0.40 -18.28 16 16 H 0.45 15.23 8.96 -213.29 -1.91 13.31 16 17 N -0.35 -13.72 3.63 -337.53 -1.23 -14.94 16 18 C 0.27 11.48 5.71 85.63 0.49 11.97 16 19 C -0.56 -26.88 9.39 25.60 0.24 -26.64 16 20 H 0.06 2.80 7.81 -2.91 -0.02 2.78 16 21 C 0.03 1.58 5.46 84.65 0.46 2.04 16 22 N -0.91 -46.05 13.29 21.45 0.28 -45.76 16 23 Si 0.96 39.13 29.54 68.60 2.03 41.16 16 24 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 25 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 27 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 28 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.08 2.45 7.79 -2.39 -0.02 2.43 16 30 H 0.17 7.32 5.77 -2.91 -0.02 7.31 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 2.49 5.22 -2.39 -0.01 2.48 16 33 H 0.06 1.97 7.14 -2.39 -0.02 1.96 16 34 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.52 6.93 -2.38 -0.02 1.50 16 37 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.39 3.20 9.12 -74.06 -0.68 2.52 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 41 H 0.07 2.92 7.88 -2.38 -0.02 2.90 16 42 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 Total: -1.00 -65.28 347.83 -0.26 -65.54 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -1.53 Total: 33.47 kcal Atomic # 6 Polarization: 29.89 SS G_CDS: 7.40 Total: 37.30 kcal Atomic # 7 Polarization: -128.76 SS G_CDS: -6.62 Total: -135.38 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -1.54 Total: -42.09 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -65.28 -0.26 -65.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330714366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.987 kcal (2) G-P(sol) polarization free energy of solvation -65.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds