Wall clock time and date at job start Tue Mar 31 2020 03:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35761 * 117.00334 * 2 1 4 4 C 1.35945 * 126.19796 * 94.91088 * 3 2 1 5 5 C 1.50707 * 126.07951 * 0.02562 * 4 3 2 6 6 N 1.46504 * 109.47068 * 89.99359 * 5 4 3 7 7 C 1.34772 * 119.99593 * 179.97438 * 6 5 4 8 8 O 1.21585 * 120.00469 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99952 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00308 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47264 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.46979 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00022 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99666 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99891 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00403 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47305 * 89.99933 * 16 14 12 18 18 H 1.48503 * 109.47590 * 210.00306 * 16 14 12 19 19 H 1.48504 * 109.47091 * 330.00588 * 16 14 12 20 20 C 1.39817 * 107.83500 * 180.26666 * 4 3 2 21 21 C 1.50695 * 125.85680 * 179.76430 * 20 4 3 22 22 N 1.30833 * 108.28096 * 359.59220 * 20 4 3 23 23 N 1.35130 * 126.19046 * 274.94572 * 3 2 1 24 24 C 1.46508 * 126.03794 * 359.95194 * 23 3 2 25 25 H 1.09005 * 109.46863 * 64.69727 * 1 2 3 26 26 H 1.09004 * 109.47128 * 184.69828 * 1 2 3 27 27 H 1.09001 * 109.47328 * 304.70016 * 1 2 3 28 28 H 1.08997 * 109.46947 * 329.99635 * 5 4 3 29 29 H 1.08994 * 109.46401 * 209.99411 * 5 4 3 30 30 H 0.96998 * 120.00016 * 0.02562 * 6 5 4 31 31 H 0.97001 * 119.99699 * 359.97438 * 9 7 6 32 32 H 1.09002 * 109.46672 * 299.99590 * 10 9 7 33 33 H 1.08994 * 109.47087 * 59.99584 * 10 9 7 34 34 H 1.09004 * 109.46395 * 299.99695 * 11 10 9 35 35 H 1.08995 * 109.47189 * 59.99306 * 11 10 9 36 36 H 0.96999 * 120.00216 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47492 * 89.99893 * 21 20 4 38 38 H 1.09005 * 109.47539 * 209.99871 * 21 20 4 39 39 H 1.09002 * 109.47684 * 330.00024 * 21 20 4 40 40 H 1.09003 * 109.46929 * 94.17444 * 24 23 3 41 41 H 1.09000 * 109.47184 * 214.17397 * 24 23 3 42 42 H 1.09000 * 109.46747 * 334.17689 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 2.4936 1.8823 1.0930 5 6 2.3953 1.4175 2.5233 6 7 3.5897 0.6424 2.8680 7 6 3.7221 0.1228 4.1045 8 8 2.8501 0.2970 4.9337 9 7 4.8211 -0.5898 4.4220 10 6 4.9648 -1.1551 5.7658 11 6 6.2917 -1.9107 5.8621 12 6 6.4392 -2.4926 7.2444 13 1 5.6642 -2.3386 7.9806 14 6 7.5639 -3.2209 7.5693 15 7 7.6929 -3.7283 8.7757 16 14 8.9046 -3.4868 6.2961 17 1 9.8962 -2.3848 6.3838 18 1 9.5815 -4.7833 6.5532 19 1 8.3021 -3.5035 4.9389 20 6 3.0570 3.0845 0.6547 21 6 3.6729 4.1427 1.5332 22 7 2.9611 3.1314 -0.6493 23 7 2.3239 1.9632 -1.0865 24 6 2.0146 1.6189 -2.4766 25 1 -0.3633 0.4393 -0.9291 26 1 -0.3633 -1.0242 0.0842 27 1 -0.3634 0.5850 0.8449 28 1 1.5100 0.7929 2.6422 29 1 2.3209 2.2827 3.1820 30 1 4.2855 0.5037 2.2066 31 1 5.5166 -0.7291 3.7603 32 1 4.9509 -0.3509 6.5016 33 1 4.1406 -1.8409 5.9616 34 1 6.3060 -2.7148 5.1263 35 1 7.1156 -1.2245 5.6665 36 1 8.4840 -4.2410 9.0042 37 1 4.7361 3.9376 1.6582 38 1 3.5437 5.1206 1.0692 39 1 3.1845 4.1356 2.5076 40 1 1.0583 2.0610 -2.7562 41 1 2.7978 2.0045 -3.1293 42 1 1.9575 0.5352 -2.5783 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359285509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:58 Heat of formation + Delta-G solvation = 8.605342 kcal Electronic energy + Delta-G solvation = -23466.062129 eV Core-core repulsion = 19869.690113 eV Total energy + Delta-G solvation = -3596.372016 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.92716 -39.43254 -38.48395 -35.52285 -34.66042 -33.70733 -32.70361 -30.84554 -30.10593 -29.52609 -27.88666 -26.46797 -25.07823 -23.99559 -21.13825 -20.74450 -20.51775 -20.27936 -18.22871 -17.63473 -16.88815 -16.74975 -16.33454 -15.75203 -15.20178 -15.12677 -15.00739 -14.27809 -13.99423 -13.90362 -13.76558 -13.60466 -13.51973 -13.26543 -12.90801 -12.70495 -12.54084 -12.50279 -12.29879 -12.07981 -11.41517 -11.28969 -11.14429 -10.50712 -10.31795 -10.19331 -9.92633 -9.74474 -9.46376 -9.27367 -8.92419 -8.80439 -8.57714 -8.25811 -6.06400 -4.05884 1.13684 1.88301 2.12758 3.12830 3.29058 3.35349 3.36764 3.38391 3.65784 4.00633 4.42231 4.58579 4.65223 4.67255 4.74645 4.77348 4.80195 4.88187 4.95753 5.08819 5.13393 5.26776 5.37658 5.58699 5.65241 5.67356 5.78142 5.92864 6.17444 6.27496 6.33236 6.64628 6.70618 6.92540 7.02478 7.16443 7.28335 7.32135 7.42095 7.73357 8.41729 8.52979 8.98401 9.04600 9.54103 11.06749 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.021812 B = 0.002736 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.369801 B =10230.095358 C =10261.217628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.306 6.306 3 C 0.274 3.726 4 C -0.256 4.256 5 C 0.227 3.773 6 N -0.746 5.746 7 C 0.700 3.300 8 O -0.598 6.598 9 N -0.743 5.743 10 C 0.149 3.851 11 C -0.022 4.022 12 C -0.520 4.520 13 H 0.076 0.924 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.882 3.118 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.266 1.266 20 C 0.102 3.898 21 C -0.077 4.077 22 N -0.280 5.280 23 N -0.381 5.381 24 C 0.098 3.902 25 H 0.047 0.953 26 H 0.106 0.894 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.393 0.607 31 H 0.391 0.609 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.021 0.979 35 H 0.017 0.983 36 H 0.264 0.736 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.873 12.980 -25.002 30.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.215 6.215 3 C 0.104 3.896 4 C -0.269 4.269 5 C 0.102 3.898 6 N -0.403 5.403 7 C 0.400 3.600 8 O -0.476 6.476 9 N -0.397 5.397 10 C 0.026 3.974 11 C -0.060 4.060 12 C -0.559 4.559 13 H 0.094 0.906 14 C -0.133 4.133 15 N -0.538 5.538 16 Si 0.710 3.290 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.191 1.191 20 C -0.064 4.064 21 C -0.136 4.136 22 N -0.105 5.105 23 N -0.171 5.171 24 C -0.043 4.043 25 H 0.066 0.934 26 H 0.124 0.876 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.226 0.774 31 H 0.223 0.777 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.332 13.383 -25.245 31.530 hybrid contribution 1.041 -0.865 -0.805 1.575 sum -12.291 12.518 -26.049 31.406 Atomic orbital electron populations 1.23186 0.77386 1.04513 1.01244 1.86157 1.21065 1.21149 1.93146 1.18899 0.98235 0.85480 0.86972 1.19755 1.14919 0.97198 0.95026 1.19064 0.87603 0.94805 0.88298 1.45225 1.23690 1.58588 1.12807 1.16022 0.82980 0.78914 0.82105 1.90892 1.42325 1.65321 1.49101 1.45513 1.20888 1.56701 1.16603 1.21345 0.99502 0.96704 0.79817 1.19797 0.92123 0.95331 0.98733 1.20934 1.06116 1.32888 0.95941 0.90574 1.24998 0.98044 0.95067 0.95224 1.69905 1.28858 1.35693 1.19370 0.86749 0.82162 0.77674 0.82462 1.20260 1.21349 1.19089 1.22117 0.97272 0.95515 0.91480 1.20273 1.00854 0.94989 0.97445 1.77482 1.19270 1.01542 1.12247 1.48930 1.46676 1.14845 1.06660 1.21890 1.02468 1.02102 0.77885 0.93420 0.87561 0.92261 0.91591 0.90838 0.77372 0.77659 0.92203 0.92234 0.96077 0.96479 0.92609 0.89943 0.90622 0.89823 0.90752 0.88963 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.13 101.05 1.12 1.33 16 2 O -0.31 -3.02 10.38 -18.99 -0.20 -3.22 16 3 C 0.27 2.89 6.93 -16.92 -0.12 2.77 16 4 C -0.26 -2.81 5.49 -104.85 -0.58 -3.39 16 5 C 0.23 2.77 5.94 -5.19 -0.03 2.74 16 6 N -0.75 -10.00 5.55 -66.41 -0.37 -10.37 16 7 C 0.70 12.32 8.57 -86.92 -0.74 11.57 16 8 O -0.60 -12.88 16.34 5.29 0.09 -12.79 16 9 N -0.74 -12.98 5.56 -65.23 -0.36 -13.34 16 10 C 0.15 3.17 5.61 -4.04 -0.02 3.14 16 11 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 12 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 13 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 16 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 20 C 0.10 1.07 7.21 -82.43 -0.59 0.48 16 21 C -0.08 -0.62 10.26 36.00 0.37 -0.25 16 22 N -0.28 -3.13 12.57 33.66 0.42 -2.71 16 23 N -0.38 -3.72 4.02 -68.28 -0.27 -4.00 16 24 C 0.10 0.55 11.44 59.85 0.68 1.23 16 25 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.89 7.25 -51.93 -0.38 0.51 16 30 H 0.39 4.55 8.48 -40.82 -0.35 4.20 16 31 H 0.39 5.76 8.49 -40.82 -0.35 5.41 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 35 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.63 7.25 -51.93 -0.38 0.25 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.40 8.05 -51.93 -0.42 -0.01 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -35.92 360.47 -6.05 -41.98 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.44 Total: 3.49 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -0.45 Total: 5.75 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.19 Total: -57.32 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.11 Total: -16.01 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.92 -6.05 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359285509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.582 kcal (2) G-P(sol) polarization free energy of solvation -35.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds