Wall clock time and date at job start Tue Mar 31 2020 03:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35761 * 117.00334 * 2 1 4 4 C 1.35945 * 126.19796 * 94.91088 * 3 2 1 5 5 C 1.50707 * 126.07951 * 0.02562 * 4 3 2 6 6 N 1.46504 * 109.47068 * 89.99359 * 5 4 3 7 7 C 1.34772 * 119.99593 * 179.97438 * 6 5 4 8 8 O 1.21585 * 120.00469 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99952 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00308 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47264 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.46979 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00022 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99666 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99891 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00403 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47305 * 89.99933 * 16 14 12 18 18 H 1.48503 * 109.47590 * 210.00306 * 16 14 12 19 19 H 1.48504 * 109.47091 * 330.00588 * 16 14 12 20 20 C 1.39817 * 107.83500 * 180.26666 * 4 3 2 21 21 C 1.50695 * 125.85680 * 179.76430 * 20 4 3 22 22 N 1.30833 * 108.28096 * 359.59220 * 20 4 3 23 23 N 1.35130 * 126.19046 * 274.94572 * 3 2 1 24 24 C 1.46508 * 126.03794 * 359.95194 * 23 3 2 25 25 H 1.09005 * 109.46863 * 64.69727 * 1 2 3 26 26 H 1.09004 * 109.47128 * 184.69828 * 1 2 3 27 27 H 1.09001 * 109.47328 * 304.70016 * 1 2 3 28 28 H 1.08997 * 109.46947 * 329.99635 * 5 4 3 29 29 H 1.08994 * 109.46401 * 209.99411 * 5 4 3 30 30 H 0.96998 * 120.00016 * 0.02562 * 6 5 4 31 31 H 0.97001 * 119.99699 * 359.97438 * 9 7 6 32 32 H 1.09002 * 109.46672 * 299.99590 * 10 9 7 33 33 H 1.08994 * 109.47087 * 59.99584 * 10 9 7 34 34 H 1.09004 * 109.46395 * 299.99695 * 11 10 9 35 35 H 1.08995 * 109.47189 * 59.99306 * 11 10 9 36 36 H 0.96999 * 120.00216 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47492 * 89.99893 * 21 20 4 38 38 H 1.09005 * 109.47539 * 209.99871 * 21 20 4 39 39 H 1.09002 * 109.47684 * 330.00024 * 21 20 4 40 40 H 1.09003 * 109.46929 * 94.17444 * 24 23 3 41 41 H 1.09000 * 109.47184 * 214.17397 * 24 23 3 42 42 H 1.09000 * 109.46747 * 334.17689 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 2.4936 1.8823 1.0930 5 6 2.3953 1.4175 2.5233 6 7 3.5897 0.6424 2.8680 7 6 3.7221 0.1228 4.1045 8 8 2.8501 0.2970 4.9337 9 7 4.8211 -0.5898 4.4220 10 6 4.9648 -1.1551 5.7658 11 6 6.2917 -1.9107 5.8621 12 6 6.4392 -2.4926 7.2444 13 1 5.6642 -2.3386 7.9806 14 6 7.5639 -3.2209 7.5693 15 7 7.6929 -3.7283 8.7757 16 14 8.9046 -3.4868 6.2961 17 1 9.8962 -2.3848 6.3838 18 1 9.5815 -4.7833 6.5532 19 1 8.3021 -3.5035 4.9389 20 6 3.0570 3.0845 0.6547 21 6 3.6729 4.1427 1.5332 22 7 2.9611 3.1314 -0.6493 23 7 2.3239 1.9632 -1.0865 24 6 2.0146 1.6189 -2.4766 25 1 -0.3633 0.4393 -0.9291 26 1 -0.3633 -1.0242 0.0842 27 1 -0.3634 0.5850 0.8449 28 1 1.5100 0.7929 2.6422 29 1 2.3209 2.2827 3.1820 30 1 4.2855 0.5037 2.2066 31 1 5.5166 -0.7291 3.7603 32 1 4.9509 -0.3509 6.5016 33 1 4.1406 -1.8409 5.9616 34 1 6.3060 -2.7148 5.1263 35 1 7.1156 -1.2245 5.6665 36 1 8.4840 -4.2410 9.0042 37 1 4.7361 3.9376 1.6582 38 1 3.5437 5.1206 1.0692 39 1 3.1845 4.1356 2.5076 40 1 1.0583 2.0610 -2.7562 41 1 2.7978 2.0045 -3.1293 42 1 1.9575 0.5352 -2.5783 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359285509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:58 Heat of formation + Delta-G solvation = -20.096199 kcal Electronic energy + Delta-G solvation = -23467.306722 eV Core-core repulsion = 19869.690113 eV Total energy + Delta-G solvation = -3597.616609 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.67433 -40.84794 -39.16791 -36.87124 -36.04301 -34.79602 -34.52309 -32.20403 -31.18601 -30.42100 -28.59591 -27.32131 -26.47989 -25.14414 -22.62824 -21.94367 -21.85343 -21.05534 -19.48736 -18.87420 -18.46972 -17.57971 -17.09272 -16.99294 -16.56316 -16.28030 -15.81789 -15.69738 -15.28116 -15.25772 -15.08909 -14.57298 -14.37376 -14.35579 -14.01500 -13.76574 -13.42678 -13.31351 -13.12988 -13.04537 -12.96058 -12.65370 -12.13702 -12.12542 -12.00265 -11.74064 -11.51175 -11.29173 -11.20116 -10.76235 -10.29657 -10.17576 -9.66650 -9.60899 -8.27454 -6.34216 0.40339 1.23369 1.29322 1.40951 1.43465 1.54818 2.03578 2.23786 2.39140 2.53927 3.07629 3.33886 3.50229 3.96013 3.99864 4.16807 4.24952 4.28849 4.32613 4.38912 4.40316 4.50389 4.58778 4.65460 4.70274 4.80454 4.82494 4.91354 4.97358 5.03668 5.20000 5.23027 5.45672 5.49095 5.52148 5.58265 5.71257 6.09020 6.26643 6.34384 6.54234 6.73165 7.18807 7.30108 7.66273 8.89407 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.021812 B = 0.002736 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.369801 B =10230.095358 C =10261.217628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.320 6.320 3 C 0.275 3.725 4 C -0.272 4.272 5 C 0.232 3.768 6 N -0.726 5.726 7 C 0.700 3.300 8 O -0.640 6.640 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.012 4.012 12 C -0.537 4.537 13 H 0.030 0.970 14 C 0.004 3.996 15 N -0.951 5.951 16 Si 0.959 3.041 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.238 1.238 20 C 0.099 3.901 21 C -0.077 4.077 22 N -0.301 5.301 23 N -0.380 5.380 24 C 0.088 3.912 25 H 0.066 0.934 26 H 0.122 0.878 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.406 0.594 31 H 0.408 0.592 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.268 0.732 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.139 13.409 -28.350 33.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.104 3.896 4 C -0.284 4.284 5 C 0.108 3.892 6 N -0.382 5.382 7 C 0.400 3.600 8 O -0.522 6.522 9 N -0.388 5.388 10 C 0.041 3.959 11 C -0.050 4.050 12 C -0.576 4.576 13 H 0.048 0.952 14 C -0.193 4.193 15 N -0.591 5.591 16 Si 0.781 3.219 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.161 1.161 20 C -0.066 4.066 21 C -0.135 4.135 22 N -0.127 5.127 23 N -0.170 5.170 24 C -0.051 4.051 25 H 0.085 0.915 26 H 0.140 0.860 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.241 0.759 31 H 0.244 0.756 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.604 13.841 -28.679 34.248 hybrid contribution 0.674 -1.000 0.233 1.228 sum -11.929 12.841 -28.446 33.412 Atomic orbital electron populations 1.23409 0.75599 1.05726 1.02107 1.86125 1.22795 1.20866 1.93256 1.18983 0.97819 0.85494 0.87263 1.19611 1.16546 0.97945 0.94345 1.19024 0.86505 0.94317 0.89381 1.45092 1.24319 1.57377 1.11403 1.16116 0.82302 0.78786 0.82827 1.90870 1.43765 1.66806 1.50733 1.45137 1.21621 1.56560 1.15532 1.20863 0.97913 0.95655 0.81487 1.19643 0.93561 0.95925 0.95831 1.21259 1.05190 1.33459 0.97658 0.95174 1.26066 1.01047 0.94492 0.97700 1.70075 1.30075 1.36901 1.22075 0.85536 0.78364 0.77737 0.80214 1.18976 1.21285 1.16144 1.22422 0.96936 0.95699 0.91557 1.20348 1.01003 0.94907 0.97253 1.77448 1.20172 1.02521 1.12558 1.49217 1.45836 1.14186 1.07774 1.22221 1.03689 1.03172 0.76045 0.91517 0.86001 0.92698 0.92543 0.90830 0.75907 0.75614 0.93915 0.94132 0.94658 0.94635 0.92356 0.89368 0.89621 0.89549 0.88957 0.88144 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.13 113.37 1.26 1.55 16 2 O -0.32 -5.79 10.38 -90.87 -0.94 -6.73 16 3 C 0.28 5.38 6.93 83.65 0.58 5.96 16 4 C -0.27 -5.62 5.49 -20.01 -0.11 -5.73 16 5 C 0.23 5.46 5.94 85.63 0.51 5.97 16 6 N -0.73 -18.41 5.55 -482.30 -2.68 -21.08 16 7 C 0.70 24.00 8.57 179.06 1.53 25.53 16 8 O -0.64 -27.70 16.34 -3.98 -0.07 -27.77 16 9 N -0.73 -24.48 5.56 -478.54 -2.66 -27.14 16 10 C 0.17 7.00 5.61 86.38 0.48 7.49 16 11 C -0.01 -0.53 4.16 29.85 0.12 -0.41 16 12 C -0.54 -31.08 9.66 25.60 0.25 -30.83 16 13 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 14 C 0.00 0.23 5.47 84.66 0.46 0.69 16 15 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 16 Si 0.96 42.85 27.47 68.60 1.88 44.73 16 17 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 18 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 20 C 0.10 1.95 7.21 43.09 0.31 2.26 16 21 C -0.08 -1.12 10.26 71.23 0.73 -0.39 16 22 N -0.30 -6.26 12.57 -47.42 -0.60 -6.86 16 23 N -0.38 -6.71 4.02 -481.24 -1.93 -8.64 16 24 C 0.09 0.79 11.44 127.77 1.46 2.25 16 25 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 26 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.74 7.25 -2.39 -0.02 1.72 16 30 H 0.41 8.47 8.48 -92.71 -0.79 7.69 16 31 H 0.41 10.83 8.49 -92.71 -0.79 10.04 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.52 7.20 -2.38 -0.02 1.50 16 35 H 0.04 1.50 7.57 -2.39 -0.02 1.48 16 36 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 37 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.09 1.19 7.25 -2.39 -0.02 1.18 16 40 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.10 0.66 8.05 -2.39 -0.02 0.64 16 Total: -1.00 -78.90 360.47 0.32 -78.58 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -0.59 Total: 20.10 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 7.60 Total: 14.33 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -7.57 Total: -123.25 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -1.01 Total: -34.50 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.88 Total: 44.73 kcal Total: -78.90 0.32 -78.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359285509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.488 kcal (2) G-P(sol) polarization free energy of solvation -78.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds