Wall clock time and date at job start Tue Mar 31 2020 03:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00248 * 2 1 4 4 O 1.20826 * 119.99679 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99993 * 179.97438 * 3 2 1 6 6 H 1.09004 * 112.90430 * 48.75641 * 5 3 2 7 7 C 1.53782 * 113.61054 * 180.02562 * 5 3 2 8 8 C 1.53780 * 87.17135 * 140.02835 * 7 5 3 9 9 H 1.08999 * 113.61744 * 89.07253 * 8 7 5 10 10 N 1.46501 * 113.61810 * 219.89231 * 8 7 5 11 11 C 1.34767 * 120.00468 * 205.00068 * 10 8 7 12 12 O 1.21594 * 120.00026 * 359.97438 * 11 10 8 13 13 N 1.34772 * 120.00319 * 179.97438 * 11 10 8 14 14 C 1.46497 * 120.00455 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47520 * 181.04714 * 14 13 11 16 16 C 1.50702 * 115.55004 * 39.68632 * 15 14 13 17 17 H 1.08001 * 119.99725 * 264.53800 * 16 15 14 18 18 C 1.37875 * 120.00295 * 84.52763 * 16 15 14 19 19 N 1.31514 * 119.99736 * 352.92754 * 18 16 15 20 20 Si 1.86797 * 120.00069 * 172.91678 * 18 16 15 21 21 H 1.48496 * 109.47263 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46869 * 120.00512 * 20 18 16 23 23 H 1.48493 * 109.47537 * 240.00372 * 20 18 16 24 24 C 1.53001 * 117.50289 * 253.97448 * 15 14 13 25 25 C 1.53002 * 60.00221 * 252.51132 * 24 15 14 26 26 C 1.53779 * 87.08174 * 334.52462 * 8 7 5 27 27 H 1.09002 * 109.46563 * 299.99236 * 1 2 3 28 28 H 1.08994 * 109.47449 * 59.99388 * 1 2 3 29 29 H 1.08996 * 109.47251 * 180.02562 * 1 2 3 30 30 H 1.08999 * 113.61626 * 25.43658 * 7 5 3 31 31 H 1.09007 * 113.61322 * 254.61718 * 7 5 3 32 32 H 0.97007 * 119.99194 * 25.00174 * 10 8 7 33 33 H 0.97005 * 119.99919 * 0.02562 * 13 11 10 34 34 H 1.08997 * 109.47478 * 301.05247 * 14 13 11 35 35 H 1.09009 * 109.46792 * 61.05018 * 14 13 11 36 36 H 0.97000 * 119.99894 * 185.03068 * 19 18 16 37 37 H 1.09002 * 117.49560 * 0.02562 * 24 15 14 38 38 H 1.08999 * 117.50080 * 145.01945 * 24 15 14 39 39 H 1.09008 * 117.49605 * 252.51269 * 25 24 15 40 40 H 1.08994 * 117.51682 * 107.48000 * 25 24 15 41 41 H 1.08996 * 113.61803 * 139.97999 * 26 8 7 42 42 H 1.09003 * 113.61648 * 270.80452 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0249 0.6357 -0.7541 7 6 4.1078 2.7141 0.0011 8 6 5.1824 2.2285 0.9881 9 1 6.0820 1.8500 0.5028 10 7 5.4733 3.1867 2.0574 11 6 6.6720 3.1664 2.6729 12 8 7.5121 2.3524 2.3409 13 7 6.9398 4.0482 3.6562 14 6 8.2427 4.0258 4.3256 15 6 8.2770 5.1035 5.4111 16 6 7.0065 5.2672 6.2049 17 1 6.2861 6.0203 5.9215 18 6 6.7637 4.4556 7.2927 19 7 7.5693 3.4498 7.5554 20 14 5.2908 4.7848 8.3933 21 1 4.5475 5.9657 7.8855 22 1 4.3966 3.5991 8.3913 23 1 5.7570 5.0507 9.7779 24 6 9.1037 6.3605 5.1328 25 6 9.6015 5.3259 6.1441 26 6 4.1937 1.1248 1.3995 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.4172 3.4402 0.4300 31 1 4.5098 3.0298 -0.9617 32 1 4.8029 3.8358 2.3225 33 1 6.2694 4.6974 3.9213 34 1 8.4012 3.0476 4.7796 35 1 9.0292 4.2196 3.5962 36 1 7.3590 2.8355 8.2760 37 1 9.6227 6.4199 4.1761 38 1 8.7285 7.3063 5.5236 39 1 9.5539 5.5911 7.2003 40 1 10.4483 4.7043 5.8532 41 1 4.6649 0.1560 1.5652 42 1 3.5275 1.4159 2.2117 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413523579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:52 Heat of formation + Delta-G solvation = -94.173302 kcal Electronic energy + Delta-G solvation = -23672.544298 eV Core-core repulsion = 20039.422714 eV Total energy + Delta-G solvation = -3633.121584 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.92579 -40.90002 -39.33986 -38.35969 -37.38183 -34.90425 -34.12459 -33.94787 -29.40044 -28.07924 -27.29367 -26.74913 -26.19029 -22.93999 -22.60157 -21.67196 -21.23175 -20.67896 -19.05621 -18.88279 -18.08122 -17.83224 -17.39258 -16.77781 -16.54416 -16.39867 -16.09828 -15.68074 -15.33671 -14.83940 -14.46021 -14.36671 -14.25035 -13.91874 -13.54316 -13.46066 -13.37916 -12.96952 -12.91664 -12.82231 -12.40570 -12.31152 -12.26091 -11.99327 -11.81675 -11.71815 -11.48333 -11.36794 -11.16368 -10.80721 -10.45214 -10.21686 -9.97775 -9.46981 -8.08453 -6.21735 1.09269 1.41240 1.46359 1.54658 1.66448 2.03526 2.29795 2.43021 3.19463 3.31851 3.39100 3.43391 3.64661 3.80481 3.84755 4.07186 4.29333 4.30332 4.31507 4.55867 4.57239 4.65294 4.69482 4.71018 4.71466 4.79037 4.89809 4.98618 5.03272 5.08271 5.21552 5.30178 5.35312 5.52524 5.64945 5.67121 5.78116 5.84042 6.23371 6.40289 6.68700 6.86334 7.31174 7.48210 7.76318 8.99089 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.003382 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.771067 B = 8277.009912 C = 9324.000157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.474 3.526 4 O -0.536 6.536 5 C -0.098 4.098 6 H 0.158 0.842 7 C -0.114 4.114 8 C 0.140 3.860 9 H 0.114 0.886 10 N -0.726 5.726 11 C 0.696 3.304 12 O -0.645 6.645 13 N -0.712 5.712 14 C 0.198 3.802 15 C 0.005 3.995 16 C -0.503 4.503 17 H 0.065 0.935 18 C 0.031 3.969 19 N -0.903 5.903 20 Si 0.947 3.053 21 H -0.260 1.260 22 H -0.288 1.288 23 H -0.288 1.288 24 C -0.180 4.180 25 C -0.163 4.163 26 C -0.136 4.136 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.129 0.871 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.408 0.592 33 H 0.407 0.593 34 H 0.024 0.976 35 H 0.039 0.961 36 H 0.258 0.742 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.511 -4.103 -15.710 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.319 3.681 4 O -0.425 6.425 5 C -0.117 4.117 6 H 0.175 0.825 7 C -0.153 4.153 8 C 0.034 3.966 9 H 0.132 0.868 10 N -0.381 5.381 11 C 0.395 3.605 12 O -0.528 6.528 13 N -0.365 5.365 14 C 0.073 3.927 15 C 0.004 3.996 16 C -0.541 4.541 17 H 0.084 0.916 18 C -0.170 4.170 19 N -0.540 5.540 20 Si 0.773 3.227 21 H -0.184 1.184 22 H -0.215 1.215 23 H -0.214 1.214 24 C -0.217 4.217 25 C -0.201 4.201 26 C -0.175 4.175 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.148 0.852 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.244 0.756 33 H 0.243 0.757 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.906 -4.633 -15.817 19.763 hybrid contribution -1.366 0.427 1.402 2.003 sum -12.272 -4.206 -14.415 19.393 Atomic orbital electron populations 1.23537 0.75035 1.05625 1.02452 1.86523 1.24826 1.33040 1.83507 1.23888 0.92298 0.81058 0.70901 1.90655 1.67783 1.37351 1.46740 1.22422 0.86103 1.01484 1.01714 0.82470 1.23316 0.96229 0.94684 1.01026 1.22317 0.97483 0.89243 0.87568 0.86799 1.44955 1.14531 1.39106 1.39508 1.16238 0.82928 0.81298 0.79998 1.90818 1.48976 1.43091 1.69886 1.44983 1.18452 1.36530 1.36554 1.20352 0.82531 0.98033 0.91788 1.19121 0.92071 0.92829 0.95542 1.20603 1.03831 1.18635 1.11051 0.91648 1.25648 0.98359 0.94859 0.98147 1.70118 1.37956 1.14920 1.31043 0.85685 0.79873 0.78159 0.78947 1.18412 1.21463 1.21412 1.23080 1.05097 0.94300 0.99255 1.22439 0.98378 1.02956 0.96308 1.23515 0.97917 1.01305 0.94784 0.92398 0.91638 0.85241 0.88705 0.87658 0.75640 0.75696 0.95770 0.94326 0.93326 0.89284 0.89725 0.91872 0.91085 0.89279 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.70 10.56 -51.40 -0.54 -7.25 16 3 C 0.47 9.69 7.49 71.24 0.53 10.22 16 4 O -0.54 -13.85 15.65 21.96 0.34 -13.50 16 5 C -0.10 -1.58 4.27 -10.92 -0.05 -1.63 16 6 H 0.16 1.67 8.14 -2.39 -0.02 1.65 16 7 C -0.11 -1.94 7.15 31.12 0.22 -1.72 16 8 C 0.14 3.16 4.24 45.52 0.19 3.35 16 9 H 0.11 2.81 7.46 -2.39 -0.02 2.79 16 10 N -0.73 -20.32 5.36 -455.31 -2.44 -22.76 16 11 C 0.70 26.79 8.57 179.06 1.53 28.33 16 12 O -0.64 -29.59 15.94 -4.01 -0.06 -29.65 16 13 N -0.71 -28.62 5.34 -478.55 -2.55 -31.17 16 14 C 0.20 9.10 5.75 86.38 0.50 9.59 16 15 C 0.01 0.24 1.71 -52.93 -0.09 0.15 16 16 C -0.50 -24.94 7.43 25.60 0.19 -24.75 16 17 H 0.07 3.12 7.82 -2.91 -0.02 3.09 16 18 C 0.03 1.62 5.39 84.65 0.46 2.08 16 19 N -0.90 -50.35 12.97 21.45 0.28 -50.07 16 20 Si 0.95 41.30 29.55 68.60 2.03 43.33 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 24 C -0.18 -7.19 9.88 30.60 0.30 -6.88 16 25 C -0.16 -7.37 9.51 30.60 0.29 -7.08 16 26 C -0.14 -2.77 7.44 31.21 0.23 -2.54 16 27 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 28 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 29 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.79 7.41 -2.39 -0.02 1.77 16 31 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.41 9.58 8.74 -92.70 -0.81 8.77 16 33 H 0.41 15.19 7.47 -92.70 -0.69 14.50 16 34 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.04 1.71 7.95 -2.38 -0.02 1.69 16 36 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 37 H 0.09 3.15 8.08 -2.39 -0.02 3.13 16 38 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.06 3.07 8.14 -2.38 -0.02 3.06 16 40 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 42 H 0.08 1.82 8.10 -2.39 -0.02 1.80 16 Total: -1.00 -67.84 358.83 2.10 -65.74 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: -0.46 Total: 34.68 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 5.51 Total: 10.66 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -4.72 Total: -104.01 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -0.26 Total: -50.40 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -67.84 2.10 -65.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413523579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.429 kcal (2) G-P(sol) polarization free energy of solvation -67.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds