Wall clock time and date at job start Tue Mar 31 2020 03:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34629 * 117.00332 * 2 1 4 4 O 1.21507 * 119.99904 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00191 * 179.97438 * 3 2 1 6 6 C 1.47213 * 120.81465 * 0.13429 * 5 3 2 7 7 C 1.53188 * 108.85717 * 126.34275 * 6 5 3 8 8 C 1.53043 * 109.30968 * 54.65146 * 7 6 5 9 9 C 1.53041 * 109.53863 * 298.63224 * 8 7 6 10 10 H 1.08994 * 109.49848 * 301.41548 * 9 8 7 11 11 C 1.50701 * 109.49708 * 181.31698 * 9 8 7 12 12 O 1.21302 * 119.99683 * 0.16716 * 11 9 8 13 13 N 1.34768 * 120.00264 * 180.16231 * 11 9 8 14 14 C 1.37096 * 120.00237 * 179.97438 * 13 11 9 15 15 H 1.07999 * 120.00288 * 222.97089 * 14 13 11 16 16 C 1.38954 * 119.99646 * 42.97707 * 14 13 11 17 17 N 1.31409 * 120.00312 * 18.86291 * 16 14 13 18 18 Si 1.86806 * 119.99947 * 198.86269 * 16 14 13 19 19 H 1.48496 * 109.46822 * 89.99563 * 18 16 14 20 20 H 1.48497 * 109.47258 * 210.00069 * 18 16 14 21 21 H 1.48503 * 109.47087 * 330.00142 * 18 16 14 22 22 C 1.46496 * 119.99904 * 0.02562 * 13 11 9 23 23 C 1.53003 * 117.50276 * 186.22791 * 22 13 11 24 24 C 1.53004 * 60.00138 * 252.51016 * 23 22 13 25 25 C 1.46923 * 120.63340 * 179.97438 * 5 3 2 26 26 H 1.09000 * 109.47169 * 300.00666 * 1 2 3 27 27 H 1.09007 * 109.47015 * 60.00502 * 1 2 3 28 28 H 1.09001 * 109.47515 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.53249 * 6.53997 * 6 5 3 30 30 H 1.08996 * 109.56207 * 246.16564 * 6 5 3 31 31 H 1.09002 * 109.49809 * 294.70275 * 7 6 5 32 32 H 1.08994 * 109.52555 * 174.62372 * 7 6 5 33 33 H 1.09002 * 109.45767 * 178.61571 * 8 7 6 34 34 H 1.08997 * 109.44619 * 58.65245 * 8 7 6 35 35 H 0.96996 * 119.99810 * 174.93215 * 17 16 14 36 36 H 1.09001 * 115.55379 * 331.93946 * 22 13 11 37 37 H 1.09004 * 117.49415 * 0.02562 * 23 22 13 38 38 H 1.08997 * 117.50439 * 145.01972 * 23 22 13 39 39 H 1.08994 * 117.49501 * 252.50561 * 24 23 22 40 40 H 1.09002 * 117.51919 * 107.47835 * 24 23 22 41 41 H 1.09001 * 109.58848 * 113.81659 * 25 5 3 42 42 H 1.08996 * 109.58788 * 353.52904 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1995 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4091 1.2700 0.0005 6 6 4.2284 0.0469 -0.0019 7 6 5.2180 0.1161 -1.1691 8 6 6.0261 1.4121 -1.0713 9 6 5.0818 2.6126 -1.1669 10 1 4.5359 2.5719 -2.1094 11 6 5.8818 3.8881 -1.1030 12 8 7.0891 3.8420 -0.9949 13 7 5.2559 5.0800 -1.1659 14 6 5.9836 6.2404 -1.1072 15 1 5.6365 7.0655 -0.5030 16 6 7.1677 6.3549 -1.8253 17 7 7.4101 5.5398 -2.8272 18 14 8.4151 7.6675 -1.3664 19 1 9.3653 7.1191 -0.3657 20 1 9.1614 8.0870 -2.5797 21 1 7.7102 8.8400 -0.7888 22 6 3.7978 5.1356 -1.2960 23 6 3.1594 6.5097 -1.5090 24 6 3.0121 5.7982 -0.1625 25 6 4.0906 2.5716 0.0000 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 3.5832 -0.8236 -0.1209 30 1 4.7760 -0.0274 0.9376 31 1 4.6707 0.0989 -2.1116 32 1 5.8935 -0.7382 -1.1252 33 1 6.7482 1.4522 -1.8869 34 1 6.5535 1.4398 -0.1178 35 1 8.2010 5.6658 -3.3744 36 1 3.3375 4.2835 -1.7962 37 1 3.8244 7.3723 -1.5528 38 1 2.2790 6.5619 -2.1496 39 1 2.0349 5.3823 0.0827 40 1 3.5802 6.1924 0.6802 41 1 4.6271 2.7037 0.9396 42 1 3.3562 3.3686 -0.1166 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491214768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:25 Heat of formation + Delta-G solvation = -90.535154 kcal Electronic energy + Delta-G solvation = -25683.786679 eV Core-core repulsion = 22050.822857 eV Total energy + Delta-G solvation = -3632.963822 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.81350 -40.72699 -38.80812 -37.82713 -37.17836 -34.87796 -33.85982 -33.08385 -32.01387 -28.65408 -27.30978 -26.10452 -24.93301 -23.26286 -22.77695 -22.70675 -21.35630 -20.49160 -19.18431 -18.16989 -18.05372 -17.87202 -17.47474 -16.72084 -16.30087 -15.97852 -15.67026 -15.37563 -15.10809 -15.05360 -14.65018 -14.43062 -14.32878 -13.83041 -13.62490 -13.53407 -13.05472 -12.88431 -12.81599 -12.72174 -12.37058 -12.24186 -12.09539 -11.97725 -11.97665 -11.81266 -11.73565 -11.46730 -11.35012 -11.25027 -10.73011 -10.02727 -9.76314 -8.98386 -8.19882 -5.97455 1.11053 1.37023 1.45117 1.50074 1.71775 2.22874 2.38722 2.90915 3.05124 3.10643 3.33140 3.77664 3.79803 3.93422 4.04731 4.06719 4.17689 4.22488 4.31895 4.41432 4.43015 4.43858 4.55058 4.60709 4.72310 4.76308 4.83487 4.86504 4.92608 4.98506 5.05493 5.21294 5.24727 5.30950 5.37578 5.41834 5.44141 5.50421 6.20145 6.28958 7.02856 7.17859 7.20053 7.68977 8.34080 8.89002 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.021565 B = 0.005203 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.065692 B = 5380.644317 C = 6386.312520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.368 6.368 3 C 0.646 3.354 4 O -0.602 6.602 5 N -0.590 5.590 6 C 0.110 3.890 7 C -0.122 4.122 8 C -0.092 4.092 9 C -0.102 4.102 10 H 0.077 0.923 11 C 0.474 3.526 12 O -0.578 6.578 13 N -0.439 5.439 14 C -0.358 4.358 15 H 0.080 0.920 16 C 0.023 3.977 17 N -0.871 5.871 18 Si 0.971 3.029 19 H -0.290 1.290 20 H -0.282 1.282 21 H -0.255 1.255 22 C 0.050 3.950 23 C -0.169 4.169 24 C -0.177 4.177 25 C 0.139 3.861 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.138 0.862 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.259 0.741 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.401 -12.839 4.715 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.281 6.281 3 C 0.401 3.599 4 O -0.493 6.493 5 N -0.330 5.330 6 C -0.011 4.011 7 C -0.160 4.160 8 C -0.130 4.130 9 C -0.124 4.124 10 H 0.095 0.905 11 C 0.262 3.738 12 O -0.458 6.458 13 N -0.158 5.158 14 C -0.485 4.485 15 H 0.098 0.902 16 C -0.183 4.183 17 N -0.506 5.506 18 Si 0.796 3.204 19 H -0.216 1.216 20 H -0.207 1.207 21 H -0.178 1.178 22 C -0.055 4.055 23 C -0.206 4.206 24 C -0.216 4.216 25 C 0.017 3.983 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.156 0.844 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.910 -12.682 4.664 18.012 hybrid contribution 0.832 1.042 -0.259 1.358 sum -11.078 -11.640 4.405 16.662 Atomic orbital electron populations 1.23502 0.72883 1.05615 1.02477 1.86226 1.25623 1.29471 1.86822 1.18139 0.83210 0.82478 0.76106 1.90961 1.64861 1.36025 1.57442 1.47077 1.01975 1.08882 1.75051 1.22059 0.93723 0.85713 0.99614 1.21921 0.98081 0.97302 0.98740 1.21240 0.96720 0.92877 1.02209 1.21461 0.97063 0.94319 0.99581 0.90469 1.20360 0.87888 0.84971 0.80537 1.90484 1.16156 1.86813 1.52379 1.43025 1.03311 1.04879 1.64629 1.19150 1.05552 0.94701 1.29096 0.90218 1.26034 1.00204 0.98516 0.93579 1.69948 1.26719 1.38152 1.15750 0.85299 0.78844 0.78680 0.77564 1.21641 1.20720 1.17831 1.21866 0.82532 0.97591 1.03555 1.23153 1.02137 0.95732 0.99611 1.23270 1.01464 1.04468 0.92404 1.21649 0.94872 0.84574 0.97175 0.92110 0.92332 0.84369 0.86836 0.89653 0.91565 0.87398 0.93284 0.92021 0.93136 0.87186 0.89335 0.87005 0.87125 0.89962 0.91303 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.76 10.56 113.37 1.20 1.96 16 2 O -0.37 -8.24 9.22 -55.38 -0.51 -8.75 16 3 C 0.65 18.82 8.43 129.79 1.09 19.92 16 4 O -0.60 -20.99 15.54 19.82 0.31 -20.68 16 5 N -0.59 -16.60 2.99 -948.62 -2.83 -19.43 16 6 C 0.11 2.30 6.46 86.31 0.56 2.85 16 7 C -0.12 -2.79 6.08 30.67 0.19 -2.60 16 8 C -0.09 -3.13 4.46 30.62 0.14 -2.99 16 9 C -0.10 -3.97 1.89 -11.47 -0.02 -3.99 16 10 H 0.08 3.06 7.57 -2.39 -0.02 3.04 16 11 C 0.47 24.40 6.37 87.66 0.56 24.96 16 12 O -0.58 -34.69 13.64 -3.10 -0.04 -34.73 16 13 N -0.44 -22.40 2.85 -613.12 -1.75 -24.15 16 14 C -0.36 -19.90 7.88 84.04 0.66 -19.24 16 15 H 0.08 4.29 7.33 -2.91 -0.02 4.27 16 16 C 0.02 1.32 4.36 84.93 0.37 1.69 16 17 N -0.87 -53.29 11.66 21.66 0.25 -53.04 16 18 Si 0.97 46.03 29.60 68.60 2.03 48.06 16 19 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 21 H -0.25 -11.11 7.11 99.48 0.71 -10.40 16 22 C 0.05 2.07 4.31 45.00 0.19 2.26 16 23 C -0.17 -6.27 9.80 30.60 0.30 -5.97 16 24 C -0.18 -6.31 9.42 30.60 0.29 -6.02 16 25 C 0.14 4.76 5.27 86.35 0.46 5.22 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.11 1.87 6.95 -2.39 -0.02 1.85 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.89 8.07 -2.39 -0.02 1.87 16 34 H 0.06 2.15 8.13 -2.39 -0.02 2.13 16 35 H 0.26 15.29 8.32 -92.71 -0.77 14.52 16 36 H 0.11 4.39 6.26 -2.39 -0.01 4.37 16 37 H 0.09 3.64 6.78 -2.38 -0.02 3.62 16 38 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 39 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 40 H 0.08 3.08 8.14 -2.39 -0.02 3.07 16 41 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.10 3.79 3.37 -2.39 -0.01 3.79 16 Total: -1.00 -75.56 336.31 4.46 -71.10 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 1.02 Total: 23.57 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 5.98 Total: 18.05 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -4.33 Total: -96.62 kcal Atomic # 8 Polarization: -63.92 SS G_CDS: -0.25 Total: -64.16 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -75.56 4.46 -71.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491214768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.440 kcal (2) G-P(sol) polarization free energy of solvation -75.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds