Wall clock time and date at job start Tue Mar 31 2020 03:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99955 * 2 1 4 4 O 1.20814 * 120.00164 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99575 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.50611 * 54.91321 * 5 3 2 7 7 C 1.53099 * 109.50526 * 294.78471 * 5 3 2 8 8 N 1.47011 * 109.25525 * 183.21929 * 7 5 3 9 9 C 1.46900 * 110.99824 * 182.39049 * 8 7 5 10 10 C 1.53005 * 109.47033 * 164.13066 * 9 8 7 11 11 H 1.09001 * 109.46591 * 55.86235 * 10 9 8 12 12 C 1.47192 * 109.47140 * 295.86225 * 10 9 8 13 13 N 6.85766 * 165.55758 * 164.24395 * 2 1 3 14 14 C 1.53002 * 109.47187 * 175.85626 * 10 9 8 15 15 C 1.50698 * 109.47268 * 185.00063 * 14 10 9 16 16 H 1.07997 * 119.99859 * 0.02562 * 15 14 10 17 17 C 1.37873 * 120.00037 * 180.02562 * 15 14 10 18 18 N 1.31520 * 120.00147 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00190 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46671 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47485 * 119.99322 * 19 17 15 22 22 H 1.48493 * 109.47210 * 239.99814 * 19 17 15 23 23 C 1.47018 * 110.75467 * 58.61477 * 8 7 5 24 24 C 1.53098 * 109.25754 * 301.38617 * 23 8 7 25 25 H 1.09003 * 109.53853 * 296.88800 * 24 23 8 26 26 C 1.52995 * 109.50576 * 176.78303 * 24 23 8 27 27 O 1.43010 * 109.25816 * 56.84503 * 24 23 8 28 28 H 1.09002 * 109.47203 * 59.99599 * 1 2 3 29 29 H 1.08995 * 109.47317 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46650 * 299.99564 * 1 2 3 31 31 H 1.09003 * 109.50720 * 303.15139 * 7 5 3 32 32 H 1.08997 * 109.50928 * 63.28305 * 7 5 3 33 33 H 1.08996 * 109.47541 * 284.12991 * 9 8 7 34 34 H 1.09002 * 109.47166 * 44.13074 * 9 8 7 35 35 H 1.08997 * 109.47527 * 305.00587 * 14 10 9 36 36 H 1.09001 * 109.46772 * 65.00447 * 14 10 9 37 37 H 0.96995 * 120.00252 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.50820 * 181.44455 * 23 8 7 39 39 H 1.09006 * 109.50658 * 61.31591 * 23 8 7 40 40 H 1.08996 * 109.47144 * 300.21532 * 26 24 23 41 41 H 1.09004 * 109.47154 * 60.21532 * 26 24 23 42 42 H 1.09003 * 109.47225 * 180.21286 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9604 0.7042 -0.8416 7 6 4.1090 0.6971 1.3093 8 7 5.5713 0.8469 1.3362 9 6 6.1389 0.2529 2.5540 10 6 7.6473 0.0681 2.3760 11 1 8.1028 1.0248 2.1204 12 6 7.8989 -0.8994 1.2956 13 7 8.0930 -1.6461 0.4644 14 6 8.2545 -0.4538 3.6797 15 6 9.7540 -0.5194 3.5446 16 1 10.2266 -0.2185 2.6213 17 6 10.5225 -0.9635 4.5996 18 7 9.9470 -1.3294 5.7242 19 14 12.3813 -1.0442 4.4324 20 1 12.7769 -0.5802 3.0783 21 1 13.0089 -0.1724 5.4577 22 1 12.8356 -2.4443 4.6278 23 6 5.9524 2.2614 1.2130 24 6 5.3912 2.8234 -0.0959 25 1 5.8389 2.2983 -0.9397 26 6 5.7159 4.3154 -0.1920 27 8 3.9730 2.6409 -0.1179 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.6726 1.2333 2.1520 32 1 3.8501 -0.3596 1.3760 33 1 5.9512 0.9122 3.4014 34 1 5.6733 -0.7155 2.7370 35 1 7.9924 0.2179 4.4971 36 1 7.8647 -1.4500 3.8889 37 1 10.4877 -1.6415 6.4665 38 1 7.0391 2.3466 1.2095 39 1 5.5455 2.8227 2.0542 40 1 5.2693 4.8396 0.6528 41 1 6.7970 4.4538 -0.1752 42 1 5.3129 4.7158 -1.1223 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593084332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:59 Heat of formation + Delta-G solvation = -102.871894 kcal Electronic energy + Delta-G solvation = -24157.816695 eV Core-core repulsion = 20524.317912 eV Total energy + Delta-G solvation = -3633.498783 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.97671 -39.64449 -37.26241 -36.60570 -35.28448 -33.61426 -33.24463 -31.79120 -29.70008 -27.80184 -27.12594 -25.88507 -24.06793 -22.19958 -21.79752 -21.37385 -20.59157 -17.90690 -17.40125 -16.96264 -16.67626 -16.54956 -16.28612 -15.80369 -15.21430 -14.97563 -14.59316 -14.39115 -13.98953 -13.49006 -13.31550 -13.06222 -12.85738 -12.75101 -12.45669 -12.42120 -12.28548 -12.01287 -11.88767 -11.63633 -11.37190 -11.30793 -11.10805 -11.09494 -10.98779 -10.72984 -10.60401 -10.44378 -10.22270 -9.90105 -9.56596 -9.24565 -8.50774 -8.45272 -6.13223 -4.16527 1.88323 2.05731 3.26116 3.34669 3.38665 3.50392 3.70022 3.77472 3.83597 4.38146 4.42514 4.51124 4.66970 4.79796 4.81277 4.84329 4.89357 4.97449 5.05912 5.19465 5.22847 5.25179 5.41626 5.44641 5.47946 5.58748 5.65231 5.71957 5.84517 5.91251 6.00302 6.02776 6.25187 6.41651 6.76460 6.87885 6.92994 7.37698 7.47687 7.48276 7.81996 8.18819 8.54069 8.88416 9.49363 10.97677 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.022045 B = 0.003330 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.823580 B = 8405.761681 C = 8997.768496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.470 3.530 4 O -0.486 6.486 5 C 0.107 3.893 6 H 0.106 0.894 7 C 0.032 3.968 8 N -0.538 5.538 9 C 0.062 3.938 10 C 0.012 3.988 11 H 0.100 0.900 12 C 0.256 3.744 13 N -0.477 5.477 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.284 1.284 23 C 0.016 3.984 24 C 0.091 3.909 25 H 0.072 0.928 26 C -0.143 4.143 27 O -0.361 6.361 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.037 0.963 36 H 0.027 0.973 37 H 0.262 0.738 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.907 7.523 -8.828 19.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.311 3.689 4 O -0.371 6.371 5 C 0.048 3.952 6 H 0.124 0.876 7 C -0.096 4.096 8 N -0.263 5.263 9 C -0.066 4.066 10 C -0.010 4.010 11 H 0.118 0.882 12 C -0.061 4.061 13 N -0.154 5.154 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.112 4.112 24 C 0.034 3.966 25 H 0.090 0.910 26 C -0.200 4.200 27 O -0.280 6.280 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.753 6.538 -10.325 19.938 hybrid contribution 0.636 0.423 1.099 1.339 sum -15.116 6.961 -9.226 19.029 Atomic orbital electron populations 1.23315 0.75724 1.03969 1.02684 1.86497 1.23752 1.32612 1.84193 1.23139 0.91001 0.81721 0.73051 1.90683 1.66632 1.36281 1.43520 1.21335 0.87255 0.86054 1.00570 0.87612 1.22610 0.89179 1.02593 0.95244 1.62242 1.08191 1.15817 1.40011 1.22295 0.94553 1.00217 0.89493 1.19216 0.93910 0.95115 0.92748 0.88242 1.28732 0.91380 0.93332 0.92682 1.80906 1.10311 1.11342 1.12862 1.19182 0.95766 0.97353 0.88470 1.21158 0.91236 1.44433 0.99562 0.92423 1.24953 0.98788 0.94984 0.95240 1.69944 1.35563 1.43820 1.03653 0.86538 0.85522 0.77814 0.78228 1.19651 1.20853 1.20960 1.22980 1.02566 0.88111 0.97559 1.22308 0.79638 0.97397 0.97286 0.90968 1.21743 1.02104 0.92967 1.03234 1.88020 1.23259 1.22292 1.94461 0.91784 0.87722 0.91716 0.93136 0.88138 0.92228 0.89812 0.94432 0.95503 0.92821 0.88347 0.93133 0.91604 0.90267 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.35 -3.69 10.56 -39.26 -0.41 -4.11 16 3 C 0.47 5.79 7.29 36.01 0.26 6.05 16 4 O -0.49 -7.31 16.26 -25.44 -0.41 -7.73 16 5 C 0.11 1.26 3.33 -27.83 -0.09 1.17 16 6 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 7 C 0.03 0.37 4.88 -3.71 -0.02 0.35 16 8 N -0.54 -6.84 4.36 -234.30 -1.02 -7.86 16 9 C 0.06 0.87 4.35 -3.82 -0.02 0.85 16 10 C 0.01 0.21 2.22 -93.41 -0.21 0.00 16 11 H 0.10 1.61 6.59 -51.93 -0.34 1.27 16 12 C 0.26 5.11 13.64 -20.83 -0.28 4.83 16 13 N -0.48 -10.43 18.52 42.08 0.78 -9.65 16 14 C 0.03 0.69 4.42 -27.88 -0.12 0.57 16 15 C -0.53 -13.63 8.60 -34.44 -0.30 -13.92 16 16 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.05 13.29 55.43 0.74 -24.32 16 19 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.02 0.18 4.75 -3.71 -0.02 0.16 16 24 C 0.09 1.00 3.43 -26.68 -0.09 0.91 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 C -0.14 -1.28 9.57 37.15 0.36 -0.92 16 27 O -0.36 -4.67 9.65 -55.10 -0.53 -5.20 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 1.07 8.04 -51.93 -0.42 0.65 16 33 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 34 H 0.08 1.16 7.93 -51.93 -0.41 0.74 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.10 1.09 6.57 -51.93 -0.34 0.75 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 356.75 15.07 5.38 5.38 Total: -1.00 -32.15 356.75 -6.61 -38.75 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -6.54 Total: -4.15 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 0.44 Total: 2.97 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.49 Total: -41.83 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -1.36 Total: -17.04 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.15 -6.61 -38.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593084332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.118 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds