Wall clock time and date at job start Tue Mar 31 2020 03:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09002 * 112.85022 * 335.91798 * 10 9 7 12 12 C 1.53782 * 113.61718 * 107.22616 * 10 9 7 13 13 C 1.53774 * 87.08161 * 89.11276 * 12 10 9 14 14 H 1.09000 * 113.69696 * 270.87608 * 13 12 10 15 15 N 1.46506 * 113.61676 * 139.97948 * 13 12 10 16 16 C 1.34782 * 119.99633 * 107.49962 * 15 13 12 17 17 O 1.21283 * 120.00261 * 0.02562 * 16 15 13 18 18 C 1.50697 * 119.99713 * 180.02562 * 16 15 13 19 19 N 1.46896 * 109.47286 * 180.02562 * 18 16 15 20 20 C 1.47184 * 111.00246 * 188.93772 * 19 18 16 21 21 C 1.52999 * 108.71953 * 167.61823 * 20 19 18 22 22 N 1.46008 * 110.03713 * 50.30342 * 21 20 19 23 23 C 1.33710 * 122.92941 * 341.84319 * 22 21 20 24 24 O 1.21281 * 118.62686 * 181.68681 * 23 22 21 25 25 C 1.46904 * 111.00249 * 66.04420 * 19 18 16 26 26 C 1.53781 * 113.61158 * 204.72465 * 10 9 7 27 27 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 29 29 H 1.08999 * 113.61704 * 203.66488 * 12 10 9 30 30 H 1.09006 * 113.61098 * 334.56706 * 12 10 9 31 31 H 0.96996 * 120.00364 * 287.51066 * 15 13 12 32 32 H 1.09004 * 109.46889 * 300.00290 * 18 16 15 33 33 H 1.09005 * 109.47296 * 60.00132 * 18 16 15 34 34 H 1.09003 * 109.59499 * 287.40685 * 20 19 18 35 35 H 1.09000 * 109.59810 * 47.86086 * 20 19 18 36 36 H 1.08994 * 109.37524 * 290.13094 * 21 20 19 37 37 H 1.09001 * 109.28316 * 170.41835 * 21 20 19 38 38 H 0.97002 * 118.53334 * 161.86675 * 22 21 20 39 39 H 1.09001 * 109.38308 * 293.82559 * 25 19 18 40 40 H 1.08994 * 109.38269 * 53.50828 * 25 19 18 41 41 H 1.08995 * 113.61890 * 25.43111 * 26 10 9 42 42 H 1.08997 * 113.61580 * 156.33630 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 1 3.5293 -3.2982 0.3984 12 6 4.7820 -2.7883 -1.3540 13 6 6.0095 -2.0211 -0.8352 14 1 5.9846 -0.9540 -1.0561 15 7 7.2858 -2.6461 -1.1909 16 6 8.0727 -2.0843 -2.1300 17 8 7.7243 -1.0611 -2.6801 18 6 9.3853 -2.7275 -2.4964 19 7 10.0493 -1.9283 -3.5348 20 6 11.2266 -2.6315 -4.0694 21 6 11.6918 -1.9152 -5.3388 22 7 11.8255 -0.4836 -5.0850 23 6 11.2494 0.1270 -4.0442 24 8 11.3865 1.3261 -3.9253 25 6 10.4387 -0.6102 -3.0161 26 6 5.5282 -2.3676 0.5838 27 1 -0.4851 0.8401 0.0004 28 1 3.8646 -0.3620 0.0004 29 1 4.9656 -3.8513 -1.5107 30 1 4.2970 -2.3115 -2.2059 31 1 7.5646 -3.4643 -0.7508 32 1 10.0235 -2.7787 -1.6142 33 1 9.2041 -3.7343 -2.8727 34 1 12.0265 -2.6204 -3.3290 35 1 10.9604 -3.6613 -4.3077 36 1 10.9620 -2.0752 -6.1324 37 1 12.6560 -2.3194 -5.6473 38 1 12.3557 0.0483 -5.6989 39 1 9.5432 -0.0350 -2.7809 40 1 11.0325 -0.7386 -2.1111 41 1 5.6458 -1.5512 1.2963 42 1 5.9159 -3.3155 0.9569 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020463533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:34 Heat of formation + Delta-G solvation = -15.479660 kcal Electronic energy + Delta-G solvation = -23775.267178 eV Core-core repulsion = 20177.850757 eV Total energy + Delta-G solvation = -3597.416420 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.78323 -39.83610 -38.36090 -37.21207 -34.86229 -34.16857 -32.70313 -30.45529 -30.17453 -29.10436 -25.59998 -25.25073 -24.23343 -23.29616 -22.33241 -20.57840 -19.64981 -19.00452 -17.75472 -17.72116 -17.43909 -16.70991 -16.37217 -15.94447 -15.37291 -15.11445 -14.97942 -14.68608 -14.43689 -14.07944 -13.85435 -13.26982 -13.11978 -12.91050 -12.70180 -12.48738 -12.31766 -12.14904 -12.11763 -12.01840 -11.72452 -10.94103 -10.84210 -10.39003 -10.34112 -10.23296 -9.92771 -9.71901 -9.58831 -9.44770 -8.98282 -8.90726 -8.79085 -7.31655 -5.79501 -3.16393 2.34853 2.58139 2.79394 2.98932 3.39898 3.44000 3.48725 3.49081 4.17765 4.25606 4.47917 4.58586 4.63141 4.68394 4.83147 4.89360 4.91472 4.96656 5.06036 5.08138 5.19051 5.31962 5.39877 5.46653 5.66525 5.75148 5.96385 6.06282 6.18577 6.22380 6.27873 6.47155 6.52100 6.55421 6.65886 6.87155 6.93986 7.52802 7.90954 7.96755 8.24666 8.39678 9.16987 9.89548 10.07537 11.38277 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.021998 B = 0.003076 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.510832 B = 9099.602360 C = 9961.944170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.882 3.118 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.093 0.907 9 N -0.730 5.730 10 C 0.177 3.823 11 H 0.077 0.923 12 C -0.182 4.182 13 C 0.123 3.877 14 H 0.110 0.890 15 N -0.718 5.718 16 C 0.507 3.493 17 O -0.520 6.520 18 C 0.034 3.966 19 N -0.514 5.514 20 C 0.032 3.968 21 C 0.117 3.883 22 N -0.722 5.722 23 C 0.529 3.471 24 O -0.550 6.550 25 C 0.032 3.968 26 C -0.165 4.165 27 H 0.261 0.739 28 H 0.363 0.637 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.397 0.603 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.048 0.952 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.400 0.600 39 H 0.136 0.864 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.497 -12.019 -6.311 30.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.064 3.936 11 H 0.095 0.905 12 C -0.224 4.224 13 C 0.019 3.981 14 H 0.128 0.872 15 N -0.369 5.369 16 C 0.292 3.708 17 O -0.395 6.395 18 C -0.097 4.097 19 N -0.240 5.240 20 C -0.096 4.096 21 C -0.008 4.008 22 N -0.375 5.375 23 C 0.316 3.684 24 O -0.427 6.427 25 C -0.098 4.098 26 C -0.205 4.205 27 H 0.071 0.929 28 H 0.196 0.804 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.230 0.770 32 H 0.085 0.915 33 H 0.128 0.872 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.236 0.764 39 H 0.154 0.846 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 26.550 -10.721 -6.864 29.444 hybrid contribution 1.497 0.679 0.502 1.719 sum 28.047 -10.042 -6.362 30.462 Atomic orbital electron populations 1.69695 1.05119 1.25987 1.56984 1.24669 0.95248 0.97277 1.01612 0.86591 0.79196 0.84912 0.78092 1.20797 1.21589 1.20279 1.19080 0.80283 0.94856 1.43719 0.88966 1.42548 1.04094 1.01562 1.88783 1.20855 0.89715 0.90254 0.92751 0.90520 1.24278 0.96729 0.99256 1.02134 1.22661 0.80700 0.98790 0.95938 0.87213 1.46078 1.21468 1.28681 1.40657 1.20417 0.85564 0.85170 0.79663 1.90726 1.73467 1.23819 1.51479 1.22085 0.94294 0.98393 0.94909 1.62145 1.25257 1.02431 1.34189 1.22569 0.91726 0.98943 0.96349 1.21475 1.01578 0.79985 0.97755 1.45536 1.53304 1.10061 1.28637 1.20097 0.78546 0.87603 0.82162 1.90785 1.61503 1.14782 1.75635 1.22549 1.01411 0.90878 0.94985 1.23917 0.99146 1.01732 0.95730 0.92935 0.80362 0.90816 0.90827 0.76969 0.91458 0.87158 0.93423 0.88237 0.90532 0.89992 0.76419 0.84635 0.91362 0.90988 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.29 13.97 55.49 0.78 -28.51 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 22.54 27.74 -169.99 -4.71 17.83 16 4 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 7 C -0.25 -7.00 10.45 -15.06 -0.16 -7.16 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.73 -17.09 5.11 -52.64 -0.27 -17.36 16 10 C 0.18 3.21 4.56 -67.12 -0.31 2.91 16 11 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 12 C -0.18 -2.93 7.68 -25.92 -0.20 -3.13 16 13 C 0.12 1.81 4.12 -67.12 -0.28 1.53 16 14 H 0.11 1.97 7.46 -51.93 -0.39 1.58 16 15 N -0.72 -7.75 5.36 -53.01 -0.28 -8.04 16 16 C 0.51 6.10 7.59 -10.98 -0.08 6.02 16 17 O -0.52 -8.92 13.91 5.55 0.08 -8.84 16 18 C 0.03 0.25 5.44 -4.98 -0.03 0.22 16 19 N -0.51 -4.57 4.47 -237.55 -1.06 -5.63 16 20 C 0.03 0.16 5.60 -3.67 -0.02 0.14 16 21 C 0.12 0.58 7.39 -4.31 -0.03 0.55 16 22 N -0.72 -5.99 5.52 -61.06 -0.34 -6.32 16 23 C 0.53 6.47 7.81 -11.68 -0.09 6.38 16 24 O -0.55 -9.08 17.82 5.56 0.10 -8.98 16 25 C 0.03 0.35 5.14 -5.19 -0.03 0.33 16 26 C -0.17 -2.31 7.58 -25.92 -0.20 -2.51 16 27 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 28 H 0.36 8.51 5.76 -40.82 -0.24 8.28 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.40 2.81 8.73 -40.82 -0.36 2.46 16 32 H 0.07 0.35 8.05 -51.93 -0.42 -0.07 16 33 H 0.11 0.53 7.94 -51.93 -0.41 0.12 16 34 H 0.05 0.21 8.08 -51.93 -0.42 -0.21 16 35 H 0.10 0.28 7.91 -51.93 -0.41 -0.13 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.40 2.83 8.84 -40.82 -0.36 2.47 16 39 H 0.14 1.96 6.01 -51.93 -0.31 1.65 16 40 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -37.62 343.60 -8.33 -45.95 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -6.28 Total: 9.30 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -1.51 Total: 5.42 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -1.18 Total: -65.86 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.18 Total: -17.82 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.71 Total: 17.83 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.62 -8.33 -45.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020463533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.467 kcal (2) G-P(sol) polarization free energy of solvation -37.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds