Wall clock time and date at job start Tue Mar 31 2020 03:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00068 * 2 1 4 4 H 1.48499 * 109.47100 * 240.00054 * 3 2 1 5 5 H 1.48502 * 109.46765 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47207 * 119.99663 * 3 2 1 7 7 C 1.38809 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99980 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00049 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99949 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.85057 * 336.19821 * 10 9 7 12 12 C 1.53780 * 113.69092 * 107.46920 * 10 9 7 13 13 C 1.53777 * 87.08498 * 139.98938 * 12 10 9 14 14 H 1.09007 * 113.69009 * 89.12362 * 13 12 10 15 15 N 1.46497 * 113.61648 * 220.02218 * 13 12 10 16 16 C 1.34777 * 119.99525 * 252.49385 * 15 13 12 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 13 19 19 H 1.08995 * 110.33072 * 42.51394 * 18 16 15 20 20 C 1.54914 * 110.36534 * 280.27586 * 18 16 15 21 21 C 1.55160 * 101.57995 * 204.15206 * 20 18 16 22 22 C 1.54314 * 102.94224 * 35.50498 * 21 20 18 23 23 N 1.47020 * 107.27396 * 337.80480 * 22 21 20 24 24 C 1.34783 * 125.65267 * 178.97578 * 23 22 21 25 25 N 1.34778 * 119.99819 * 359.96338 * 24 23 22 26 26 O 1.21583 * 120.00129 * 179.97438 * 24 23 22 27 27 C 1.53787 * 87.08211 * 334.56860 * 13 12 10 28 28 H 0.97006 * 119.99998 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99846 * 0.02562 * 9 7 2 30 30 H 1.09004 * 113.61194 * 25.43831 * 12 10 9 31 31 H 1.08994 * 113.61618 * 254.54356 * 12 10 9 32 32 H 0.97000 * 120.00580 * 72.50131 * 15 13 12 33 33 H 1.08998 * 111.00919 * 322.22706 * 20 18 16 34 34 H 1.09001 * 111.00130 * 86.04428 * 20 18 16 35 35 H 1.09006 * 110.71814 * 153.86832 * 21 20 18 36 36 H 1.09003 * 110.71824 * 277.13615 * 21 20 18 37 37 H 1.09001 * 109.88762 * 97.22495 * 22 21 20 38 38 H 1.09003 * 109.88351 * 218.38768 * 22 21 20 39 39 H 0.97006 * 119.99874 * 359.97438 * 25 24 23 40 40 H 0.96990 * 120.00288 * 179.97438 * 25 24 23 41 41 H 1.08997 * 113.61747 * 139.97438 * 27 13 12 42 42 H 1.08999 * 113.61375 * 270.88134 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6567 0.0016 11 1 3.0653 -3.5640 -0.4046 12 6 2.0020 -4.4026 1.3452 13 6 1.8501 -5.6979 0.5304 14 1 2.7998 -6.1643 0.2682 15 7 0.8911 -6.6442 1.1058 16 6 1.3306 -7.7716 1.6994 17 8 2.5198 -8.0025 1.7576 18 6 0.3445 -8.7421 2.2968 19 1 -0.5097 -8.8712 1.6323 20 6 -0.1245 -8.2465 3.6876 21 6 -0.5633 -9.5744 4.3596 22 6 0.4550 -10.5941 3.8076 23 7 0.9950 -10.0390 2.5580 24 6 1.9294 -10.6199 1.7795 25 7 2.4500 -11.8132 2.1281 26 8 2.3029 -10.0674 0.7629 27 6 1.2597 -4.8290 -0.5929 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3880 0.0016 30 1 1.1246 -4.1580 1.9441 31 1 2.9310 -4.3502 1.9128 32 1 -0.0600 -6.4595 1.0595 33 1 0.6969 -7.7843 4.2351 34 1 -0.9650 -7.5589 3.5943 35 1 -0.4865 -9.5013 5.4445 36 1 -1.5770 -9.8412 4.0609 37 1 1.2607 -10.7401 4.5271 38 1 -0.0423 -11.5432 3.6073 39 1 2.1524 -12.2538 2.9395 40 1 3.1222 -12.2315 1.5678 41 1 1.5896 -5.1209 -1.5899 42 1 0.1794 -4.7011 -0.5239 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023165821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:01 Heat of formation + Delta-G solvation = -23.668495 kcal Electronic energy + Delta-G solvation = -24115.197262 eV Core-core repulsion = 20517.425747 eV Total energy + Delta-G solvation = -3597.771515 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.82271 -39.20854 -37.88360 -37.12633 -33.96983 -33.75032 -32.63406 -31.39326 -30.15010 -29.34006 -25.03863 -24.87960 -24.07979 -22.57442 -21.73444 -20.75646 -19.87299 -19.18506 -18.33879 -17.55967 -17.07621 -16.68890 -15.98866 -15.70020 -15.01268 -14.74555 -14.63707 -14.46553 -14.25364 -13.72692 -13.46912 -13.41747 -12.98735 -12.70674 -12.59655 -12.27493 -11.84705 -11.83259 -11.74346 -11.24466 -11.20003 -10.87579 -10.55947 -10.45491 -10.26433 -10.14722 -10.01747 -9.74965 -9.63539 -9.48911 -8.87083 -8.76959 -8.53533 -6.94769 -5.77331 -3.05705 2.42017 2.89227 3.20891 3.44233 3.45357 3.49515 3.50884 4.00727 4.14649 4.29905 4.50479 4.60956 4.78000 4.84717 4.99431 5.16957 5.19236 5.33017 5.33213 5.42965 5.47818 5.50967 5.53475 5.74183 5.85850 5.93492 6.03590 6.24745 6.33776 6.39476 6.59632 6.64675 6.68169 6.80393 6.87551 7.15639 7.71489 7.74925 7.81300 8.41504 8.48448 8.65115 9.52695 10.10055 10.44969 11.45161 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.032082 B = 0.002838 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.543829 B = 9863.102069 C =10348.668846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.710 5.710 10 C 0.168 3.832 11 H 0.079 0.921 12 C -0.175 4.175 13 C 0.123 3.877 14 H 0.107 0.893 15 N -0.715 5.715 16 C 0.509 3.491 17 O -0.509 6.509 18 C 0.135 3.865 19 H 0.094 0.906 20 C -0.123 4.123 21 C -0.128 4.128 22 C 0.101 3.899 23 N -0.624 5.624 24 C 0.725 3.275 25 N -0.868 5.868 26 O -0.561 6.561 27 C -0.158 4.158 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.396 0.604 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.392 0.608 40 H 0.414 0.586 41 H 0.065 0.935 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.627 -25.321 9.734 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.348 5.348 10 C 0.055 3.945 11 H 0.097 0.903 12 C -0.217 4.217 13 C 0.018 3.982 14 H 0.125 0.875 15 N -0.366 5.366 16 C 0.292 3.708 17 O -0.383 6.383 18 C 0.027 3.973 19 H 0.112 0.888 20 C -0.162 4.162 21 C -0.166 4.166 22 C -0.023 4.023 23 N -0.365 5.365 24 C 0.425 3.575 25 N -0.437 5.437 26 O -0.436 6.436 27 C -0.198 4.198 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.230 0.770 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.220 0.780 40 H 0.246 0.754 41 H 0.084 0.916 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.405 -24.847 9.028 26.545 hybrid contribution -0.256 0.510 0.280 0.636 sum -2.661 -24.336 9.308 26.191 Atomic orbital electron populations 1.69649 1.05132 1.25824 1.57646 1.24754 0.95533 0.97760 1.02874 0.86254 0.78529 0.83431 0.77907 1.21212 1.21705 1.21232 1.19285 0.91134 0.84198 1.42778 0.91064 1.42345 1.05661 0.99762 1.87058 1.21356 0.95466 0.84896 0.92741 0.90320 1.24311 1.01629 0.95393 1.00397 1.22417 0.93373 0.87203 0.95205 0.87474 1.45907 1.10171 1.21488 1.59082 1.20303 0.89731 0.81863 0.78890 1.90723 1.16723 1.74481 1.56351 1.21677 0.94333 0.83172 0.98112 0.88823 1.22787 1.02396 0.97721 0.93269 1.22609 0.98899 0.93936 1.01142 1.22004 0.96920 0.97350 0.85992 1.47240 1.42988 1.20885 1.25368 1.15361 0.78547 0.80767 0.82860 1.42929 1.48057 1.22130 1.30563 1.91042 1.62723 1.63621 1.26175 1.23852 1.01060 0.97292 0.97622 0.93446 0.78114 0.90282 0.92445 0.77026 0.89757 0.88606 0.89446 0.90005 0.91543 0.91368 0.78035 0.75442 0.91598 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.80 9.97 -15.06 -0.15 -6.95 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -17.89 5.40 -52.64 -0.28 -18.17 16 10 C 0.17 3.42 4.48 -67.11 -0.30 3.12 16 11 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 12 C -0.17 -3.21 7.68 -25.92 -0.20 -3.40 16 13 C 0.12 2.03 4.24 -67.12 -0.28 1.75 16 14 H 0.11 1.97 7.47 -51.93 -0.39 1.58 16 15 N -0.72 -10.10 5.35 -53.01 -0.28 -10.39 16 16 C 0.51 7.77 6.25 -10.98 -0.07 7.70 16 17 O -0.51 -10.12 13.37 -18.51 -0.25 -10.37 16 18 C 0.14 1.46 3.56 -67.57 -0.24 1.22 16 19 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 20 C -0.12 -0.92 6.49 -24.58 -0.16 -1.08 16 21 C -0.13 -0.62 6.95 -24.90 -0.17 -0.79 16 22 C 0.10 0.61 6.15 -3.07 -0.02 0.59 16 23 N -0.62 -6.72 3.14 -170.03 -0.53 -7.25 16 24 C 0.72 9.80 8.01 -86.91 -0.70 9.10 16 25 N -0.87 -7.38 8.83 27.64 0.24 -7.14 16 26 O -0.56 -10.60 14.56 -18.77 -0.27 -10.87 16 27 C -0.16 -2.68 7.58 -25.91 -0.20 -2.88 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.38 10.14 7.92 -40.82 -0.32 9.82 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.40 4.47 8.73 -40.82 -0.36 4.11 16 33 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.39 2.00 7.82 -40.82 -0.32 1.68 16 40 H 0.41 3.13 8.93 -40.82 -0.36 2.76 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 LS Contribution 345.98 15.07 5.21 5.21 Total: -1.00 -38.07 345.98 -9.41 -47.48 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -6.36 Total: 13.52 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -2.58 Total: 7.90 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -0.13 Total: -70.37 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.52 Total: -21.24 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -38.07 -9.41 -47.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023165821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.808 kcal (2) G-P(sol) polarization free energy of solvation -38.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds