Wall clock time and date at job start Tue Mar 31 2020 03:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99693 * 2 1 4 4 H 1.48492 * 109.47056 * 264.37595 * 3 2 1 5 5 H 1.48497 * 109.47125 * 144.36958 * 3 2 1 6 6 H 1.48500 * 109.46843 * 24.37483 * 3 2 1 7 7 C 1.38811 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99925 * 333.96092 * 7 2 1 9 9 N 1.36940 * 119.99796 * 153.95741 * 7 2 1 10 10 C 1.47022 * 125.64765 * 354.26443 * 9 7 2 11 11 C 1.54328 * 107.26535 * 181.02431 * 10 9 7 12 12 C 1.55159 * 102.94504 * 22.19839 * 11 10 9 13 13 H 1.08994 * 111.00390 * 82.60761 * 12 11 10 14 14 N 1.46894 * 111.00188 * 206.42060 * 12 11 10 15 15 C 1.46899 * 111.00148 * 304.30106 * 14 12 11 16 16 C 1.53239 * 109.33919 * 172.74751 * 15 14 12 17 17 N 1.47087 * 108.52348 * 53.82699 * 16 15 14 18 18 C 1.34776 * 120.87809 * 128.79227 * 17 16 15 19 19 O 1.21349 * 119.99779 * 186.92087 * 18 17 16 20 20 C 1.49446 * 120.00315 * 6.92290 * 18 17 16 21 21 N 1.34780 * 120.00220 * 186.71328 * 20 18 17 22 22 O 1.21354 * 120.00011 * 6.71097 * 20 18 17 23 23 C 1.47073 * 118.23457 * 308.81683 * 17 16 15 24 24 C 1.46902 * 111.00101 * 179.97438 * 14 12 11 25 25 C 1.47429 * 125.64372 * 173.96648 * 9 7 2 26 26 H 0.97000 * 119.99528 * 185.00346 * 1 2 3 27 27 H 1.09004 * 109.88352 * 300.44128 * 10 9 7 28 28 H 1.08996 * 109.87913 * 61.61095 * 10 9 7 29 29 H 1.09006 * 110.71475 * 140.56069 * 11 10 9 30 30 H 1.08994 * 110.72121 * 263.64878 * 11 10 9 31 31 H 1.08997 * 109.49231 * 292.70460 * 15 14 12 32 32 H 1.08998 * 109.49378 * 52.78880 * 15 14 12 33 33 H 1.08998 * 109.63101 * 294.11828 * 16 15 14 34 34 H 1.09001 * 109.62829 * 173.53948 * 16 15 14 35 35 H 0.97006 * 119.99532 * 0.02562 * 21 20 18 36 36 H 0.97000 * 120.00073 * 180.02562 * 21 20 18 37 37 H 1.09000 * 109.63088 * 291.46728 * 23 17 16 38 38 H 1.09004 * 109.62936 * 170.89161 * 23 17 16 39 39 H 1.09001 * 109.49443 * 307.22227 * 24 14 12 40 40 H 1.09004 * 109.48743 * 67.27093 * 24 14 12 41 41 H 1.09001 * 110.35793 * 274.73709 * 25 9 7 42 42 H 1.08996 * 110.36945 * 37.06069 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6164 1.9779 -1.3933 5 1 3.4832 1.4776 0.8156 6 1 1.3931 2.6841 0.5778 7 6 2.0104 -1.2021 -0.0005 8 1 1.5527 -2.0901 0.4096 9 7 3.2755 -1.2619 -0.5212 10 6 3.9693 -0.1668 -1.2148 11 6 5.3521 -0.7003 -1.6448 12 6 5.1398 -2.2372 -1.6682 13 1 4.6815 -2.5540 -2.6050 14 7 6.4051 -2.9470 -1.4378 15 6 7.4248 -2.5351 -2.4117 16 6 8.7722 -3.1566 -2.0292 17 7 8.5942 -4.6102 -1.8922 18 6 9.4105 -5.4704 -2.5326 19 8 9.1750 -6.6607 -2.5110 20 6 10.6058 -4.9586 -3.2693 21 7 11.3450 -5.7985 -4.0207 22 8 10.9108 -3.7866 -3.1910 23 6 7.5015 -5.1000 -1.0384 24 6 6.2040 -4.4020 -1.4593 25 6 4.1696 -2.4332 -0.4738 26 1 -0.4849 -0.8369 0.0733 27 1 3.3992 0.1359 -2.0931 28 1 4.0923 0.6802 -0.5399 29 1 5.6161 -0.3323 -2.6363 30 1 6.1152 -0.4247 -0.9170 31 1 7.1364 -2.8755 -3.4061 32 1 7.5118 -1.4486 -2.4097 33 1 9.1126 -2.7386 -1.0819 34 1 9.5055 -2.9493 -2.8086 35 1 11.1010 -6.7352 -4.0836 36 1 12.1211 -5.4663 -4.4986 37 1 7.7197 -4.8688 0.0042 38 1 7.3945 -6.1776 -1.1627 39 1 5.4056 -4.6692 -0.7669 40 1 5.9320 -4.7166 -2.4669 41 1 4.7207 -2.4517 0.4665 42 1 3.5973 -3.3526 -0.5973 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046058460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:43 Heat of formation + Delta-G solvation = -34.046143 kcal Electronic energy + Delta-G solvation = -24621.538110 eV Core-core repulsion = 21023.316586 eV Total energy + Delta-G solvation = -3598.221524 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.01370 -40.40546 -39.46571 -38.37799 -35.92166 -34.68807 -34.13247 -32.44227 -31.21772 -30.05594 -27.98921 -26.21124 -25.03094 -24.63692 -22.44046 -22.19236 -21.38679 -20.67954 -19.53053 -18.99961 -18.28075 -17.73339 -17.19418 -16.97513 -16.95417 -16.23143 -16.03017 -15.78871 -15.66287 -15.30008 -15.20795 -15.01713 -14.52289 -14.33421 -13.99330 -13.67665 -13.46141 -13.13709 -12.98322 -12.83891 -12.36832 -12.35193 -12.30760 -12.16322 -11.81748 -11.65840 -11.52409 -11.00891 -10.93377 -10.62844 -10.38325 -10.00897 -9.36109 -9.14933 -8.66547 -5.41315 0.26364 1.33637 1.40277 1.52682 1.71490 2.03644 2.49131 2.52640 2.74935 3.10089 3.41444 3.45672 3.59068 3.81113 3.90024 3.98059 4.12918 4.19958 4.30813 4.33976 4.37611 4.48868 4.58763 4.72245 4.76457 4.82310 4.84388 4.92284 4.95289 5.04520 5.12594 5.16102 5.23846 5.54252 5.65977 5.85013 5.98955 6.02670 6.10221 6.15749 6.63347 6.83141 6.98215 7.48218 8.12572 8.84894 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.038862 B = 0.003249 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.334401 B = 8615.670573 C = 9148.093187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.081 4.081 3 Si 1.115 2.885 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.308 1.308 7 C -0.320 4.320 8 H 0.045 0.955 9 N -0.633 5.633 10 C 0.098 3.902 11 C -0.106 4.106 12 C 0.086 3.914 13 H 0.046 0.954 14 N -0.528 5.528 15 C 0.040 3.960 16 C 0.084 3.916 17 N -0.581 5.581 18 C 0.501 3.499 19 O -0.547 6.547 20 C 0.518 3.482 21 N -0.798 5.798 22 O -0.532 6.532 23 C 0.119 3.881 24 C 0.044 3.956 25 C 0.147 3.853 26 H 0.247 0.753 27 H 0.028 0.972 28 H 0.032 0.968 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.034 0.966 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.422 0.578 36 H 0.425 0.575 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.621 -10.260 -9.164 29.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.274 4.274 3 Si 0.943 3.057 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.237 1.237 7 C -0.448 4.448 8 H 0.063 0.937 9 N -0.361 5.361 10 C -0.026 4.026 11 C -0.144 4.144 12 C -0.024 4.024 13 H 0.064 0.936 14 N -0.253 5.253 15 C -0.088 4.088 16 C -0.037 4.037 17 N -0.313 5.313 18 C 0.284 3.716 19 O -0.426 6.426 20 C 0.297 3.703 21 N -0.364 5.364 22 O -0.411 6.411 23 C -0.003 4.003 24 C -0.085 4.085 25 C 0.021 3.979 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.053 0.947 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.160 0.840 35 H 0.254 0.746 36 H 0.260 0.740 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 26.466 -8.416 -8.571 29.065 hybrid contribution -0.959 -2.472 -0.488 2.696 sum 25.507 -10.888 -9.059 29.176 Atomic orbital electron populations 1.71036 1.06999 1.29065 1.52870 1.27058 0.96324 1.04480 0.99542 0.83197 0.72822 0.71878 0.77853 1.19389 1.20028 1.23650 1.19947 0.90242 0.96086 1.38555 0.93695 1.44866 1.13657 1.11276 1.66300 1.21939 0.93678 0.91942 0.95060 1.22598 0.95249 0.93466 1.03069 1.22585 0.89095 0.94454 0.96226 0.93561 1.61941 1.07440 1.05272 1.50659 1.22635 0.91118 1.02229 0.92864 1.22992 0.97922 0.76765 1.06025 1.48189 1.29810 1.08237 1.45100 1.20305 0.84573 0.86114 0.80594 1.90750 1.73620 1.16208 1.61977 1.19916 0.84230 0.86013 0.80161 1.43435 1.30890 1.14051 1.48054 1.90576 1.70005 1.16832 1.63663 1.21862 0.84251 0.99663 0.94569 1.22453 0.97871 0.87489 1.00644 1.21611 0.90436 0.89356 0.96475 0.94325 0.95381 0.95096 0.88401 0.88915 0.94722 0.87537 0.89910 0.83995 0.74587 0.74048 0.89167 0.88344 0.89266 0.94804 0.94747 0.95169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.41 13.70 21.65 0.30 -62.12 16 2 C -0.08 -4.89 5.45 84.86 0.46 -4.43 16 3 Si 1.11 54.75 24.60 68.60 1.69 56.43 16 4 H -0.27 -11.94 6.57 99.48 0.65 -11.29 16 5 H -0.27 -12.45 6.43 99.48 0.64 -11.81 16 6 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 7 C -0.32 -19.01 10.46 84.03 0.88 -18.14 16 8 H 0.05 2.88 8.06 -2.91 -0.02 2.85 16 9 N -0.63 -31.33 3.33 -691.53 -2.30 -33.63 16 10 C 0.10 4.13 4.86 86.73 0.42 4.55 16 11 C -0.11 -3.15 5.03 31.79 0.16 -2.99 16 12 C 0.09 2.61 2.73 46.39 0.13 2.74 16 13 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 14 N -0.53 -12.84 4.52 -861.49 -3.90 -16.74 16 15 C 0.04 0.78 5.43 86.38 0.47 1.25 16 16 C 0.08 1.54 6.14 86.35 0.53 2.07 16 17 N -0.58 -11.51 3.01 -819.53 -2.47 -13.98 16 18 C 0.50 9.96 7.75 87.27 0.68 10.64 16 19 O -0.55 -12.79 15.95 -3.24 -0.05 -12.85 16 20 C 0.52 8.26 8.02 87.27 0.70 8.96 16 21 N -0.80 -6.49 8.87 -174.49 -1.55 -8.03 16 22 O -0.53 -10.39 14.01 -3.26 -0.05 -10.43 16 23 C 0.12 2.35 6.61 86.35 0.57 2.92 16 24 C 0.04 1.00 5.52 86.38 0.48 1.47 16 25 C 0.15 5.82 5.95 86.93 0.52 6.34 16 26 H 0.25 16.24 8.73 -92.71 -0.81 15.43 16 27 H 0.03 1.25 7.31 -2.39 -0.02 1.23 16 28 H 0.03 1.35 3.83 -2.39 -0.01 1.34 16 29 H 0.10 2.32 7.96 -2.38 -0.02 2.30 16 30 H 0.09 2.53 8.10 -2.39 -0.02 2.51 16 31 H 0.03 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.11 1.86 6.64 -2.39 -0.02 1.85 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.14 2.60 4.38 -44.15 -0.19 2.41 16 35 H 0.42 2.48 8.32 -92.70 -0.77 1.71 16 36 H 0.42 1.52 8.93 -92.71 -0.83 0.69 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.10 1.96 7.04 -2.38 -0.02 1.94 16 39 H 0.09 2.11 7.05 -2.39 -0.02 2.10 16 40 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.03 1.23 7.87 -2.39 -0.02 1.21 16 Total: -1.00 -75.47 325.13 -3.21 -78.68 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -0.88 Total: 7.28 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 5.99 Total: 15.39 kcal Atomic # 7 Polarization: -124.59 SS G_CDS: -9.92 Total: -134.50 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.10 Total: -23.28 kcal Atomic # 14 Polarization: 54.75 SS G_CDS: 1.69 Total: 56.43 kcal Total: -75.47 -3.21 -78.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046058460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.633 kcal (2) G-P(sol) polarization free energy of solvation -75.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds