Wall clock time and date at job start Tue Mar 31 2020 03:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86808 * 119.99900 * 2 1 4 4 H 1.48502 * 109.47142 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47186 * 299.99889 * 3 2 1 6 6 H 1.48501 * 109.47136 * 60.00081 * 3 2 1 7 7 C 1.38809 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99853 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99932 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.05744 * 33.58339 * 10 9 7 12 12 C 1.54270 * 110.03344 * 272.16909 * 10 9 7 13 13 C 1.54893 * 104.19545 * 264.32473 * 12 10 9 14 14 C 1.54897 * 102.74591 * 322.06003 * 13 12 10 15 15 H 1.09004 * 110.59326 * 279.20398 * 14 13 12 16 16 C 1.53006 * 110.48537 * 156.62115 * 14 13 12 17 17 N 1.46500 * 109.47086 * 70.22302 * 16 14 13 18 18 C 1.34775 * 120.00093 * 180.02562 * 17 16 14 19 19 O 1.21281 * 119.99762 * 359.97438 * 18 17 16 20 20 C 1.50695 * 120.00438 * 179.97438 * 18 17 16 21 21 H 1.09007 * 110.48905 * 317.29803 * 20 18 17 22 22 C 1.54102 * 110.54832 * 79.99679 * 20 18 17 23 23 N 1.47062 * 103.98842 * 118.66882 * 22 20 18 24 24 C 1.34257 * 109.00559 * 0.12255 * 23 22 20 25 25 O 1.21585 * 122.99858 * 179.97438 * 24 23 22 26 26 N 1.33956 * 113.95949 * 359.86924 * 24 23 22 27 27 C 1.53875 * 110.03326 * 155.00184 * 10 9 7 28 28 H 0.97004 * 120.00324 * 0.02562 * 1 2 3 29 29 H 0.96994 * 120.00031 * 0.02562 * 9 7 2 30 30 H 1.08996 * 110.48455 * 23.00201 * 12 10 9 31 31 H 1.08999 * 110.48454 * 145.51444 * 12 10 9 32 32 H 1.08997 * 110.75744 * 203.74119 * 13 12 10 33 33 H 1.09004 * 110.75439 * 80.37044 * 13 12 10 34 34 H 1.08997 * 109.46999 * 310.22191 * 16 14 13 35 35 H 1.08999 * 109.46729 * 190.22458 * 16 14 13 36 36 H 0.96999 * 120.00116 * 359.97438 * 17 16 14 37 37 H 1.09002 * 110.55087 * 237.33658 * 22 20 18 38 38 H 1.08997 * 110.54745 * 0.02562 * 22 20 18 39 39 H 0.96995 * 125.40605 * 180.02562 * 23 22 20 40 40 H 0.97000 * 125.40159 * 180.08326 * 26 24 23 41 41 H 1.08998 * 110.03150 * 359.97438 * 27 10 9 42 42 H 1.09001 * 110.07295 * 238.59055 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9837 -3.5539 0.5669 12 6 2.3698 -4.0870 -1.4478 13 6 1.2215 -5.0613 -1.8101 14 6 0.9997 -5.8352 -0.4868 15 1 1.7393 -6.6286 -0.3781 16 6 -0.4158 -6.4138 -0.4357 17 7 -0.5327 -7.5051 -1.4060 18 6 -1.6990 -8.1675 -1.5380 19 8 -2.6517 -7.8603 -0.8531 20 6 -1.8195 -9.2897 -2.5365 21 1 -1.3368 -9.0184 -3.4754 22 6 -1.2092 -10.5861 -1.9693 23 7 -2.3403 -11.5253 -1.9331 24 6 -3.4372 -10.9068 -2.3984 25 8 -4.5207 -11.4524 -2.4801 26 7 -3.2311 -9.6342 -2.7625 27 6 1.1870 -4.7683 0.6115 28 1 -0.4851 0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0002 30 1 2.3612 -3.2232 -2.1125 31 1 3.3331 -4.5947 -1.4959 32 1 1.5270 -5.7388 -2.6074 33 1 0.3231 -4.5119 -2.0915 34 1 -1.1364 -5.6329 -0.6786 35 1 -0.6166 -6.7947 0.5657 36 1 0.2291 -7.7505 -1.9540 37 1 -0.4235 -10.9586 -2.6266 38 1 -0.8194 -10.4182 -0.9654 39 1 -2.2984 -12.4437 -1.6239 40 1 -3.9058 -9.0352 -3.1185 41 1 0.2194 -4.3638 0.9083 42 1 1.6891 -5.2052 1.4747 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086791174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:02 Heat of formation + Delta-G solvation = -49.269059 kcal Electronic energy + Delta-G solvation = -23563.709570 eV Core-core repulsion = 19964.827932 eV Total energy + Delta-G solvation = -3598.881639 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.62869 -39.60751 -38.19308 -36.52110 -35.07850 -33.37520 -33.36820 -30.97028 -29.86695 -28.76664 -27.30242 -24.94898 -23.62328 -23.15846 -22.13234 -20.96120 -19.99014 -19.24846 -18.35242 -17.85498 -17.13812 -16.74577 -16.30125 -15.97496 -15.45852 -15.24533 -14.80800 -14.61403 -14.28794 -14.09797 -13.76477 -13.64453 -13.36003 -13.25890 -12.74228 -12.68828 -12.22222 -11.46480 -11.26406 -10.91274 -10.79777 -10.67026 -10.64904 -10.55596 -10.47221 -10.32565 -10.21572 -9.96173 -9.76684 -9.66008 -9.26501 -9.24505 -8.91466 -6.96445 -5.78779 -3.07313 2.12820 2.39586 2.65342 2.98242 3.41113 3.46789 3.49144 3.60453 3.78835 4.22555 4.36074 4.56578 4.73732 4.77602 4.87051 4.96033 5.01486 5.17841 5.48128 5.50625 5.65533 5.66317 5.83870 5.93784 5.99727 6.04199 6.13699 6.24542 6.28470 6.40770 6.60393 6.60521 6.68881 6.76365 6.86486 6.96761 7.05380 7.20300 7.69238 7.88700 8.26541 8.40404 9.51156 10.10392 10.44001 11.43818 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.036172 B = 0.002484 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.900085 B =11267.205879 C =11650.774290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.147 4.147 13 C -0.113 4.113 14 C -0.103 4.103 15 H 0.075 0.925 16 C 0.125 3.875 17 N -0.719 5.719 18 C 0.497 3.503 19 O -0.520 6.520 20 C 0.103 3.897 21 H 0.118 0.882 22 C 0.104 3.896 23 N -0.740 5.740 24 C 0.706 3.294 25 O -0.583 6.583 26 N -0.713 5.713 27 C -0.122 4.122 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.401 0.599 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.433 0.567 40 H 0.436 0.564 41 H 0.072 0.928 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 -22.423 -6.032 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.150 4.150 14 C -0.122 4.122 15 H 0.094 0.906 16 C 0.002 3.998 17 N -0.371 5.371 18 C 0.280 3.720 19 O -0.395 6.395 20 C -0.008 4.008 21 H 0.136 0.864 22 C -0.022 4.022 23 N -0.404 5.404 24 C 0.404 3.596 25 O -0.460 6.460 26 N -0.375 5.375 27 C -0.161 4.161 28 H 0.064 0.936 29 H 0.217 0.783 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.235 0.765 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.275 0.725 40 H 0.278 0.722 41 H 0.091 0.909 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.093 -22.303 -5.536 23.075 hybrid contribution 0.463 0.926 -0.282 1.073 sum 2.556 -21.377 -5.817 22.301 Atomic orbital electron populations 1.69668 1.05092 1.25548 1.57741 1.24746 0.95496 0.97689 1.03087 0.86148 0.78770 0.84269 0.77186 1.20591 1.21921 1.21902 1.19293 0.91021 0.84199 1.42504 0.91172 1.42551 1.05663 0.99724 1.88265 1.20797 0.94136 0.86087 0.92605 0.93376 1.23125 0.95995 0.98663 1.00948 1.22505 1.00023 0.97420 0.95075 1.22241 0.94456 0.97837 0.97634 0.90626 1.21595 0.97852 0.88475 0.91864 1.46026 1.13392 1.35880 1.41838 1.20709 0.83440 0.83495 0.84391 1.90790 1.37669 1.66156 1.44879 1.21866 0.85024 0.94597 0.99339 0.86447 1.22248 0.90383 0.86717 1.02810 1.45112 1.09170 1.15678 1.70483 1.15940 0.84148 0.81793 0.77687 1.91010 1.24800 1.68526 1.61687 1.44819 1.10435 1.12840 1.69450 1.22472 1.01521 0.95434 0.96658 0.93556 0.78271 0.90965 0.93304 0.92938 0.91294 0.90765 0.91461 0.76459 0.88573 0.89474 0.72516 0.72162 0.90899 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.90 22.06 29.55 -169.99 -5.02 17.03 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.44 9.96 -15.06 -0.15 -6.59 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.72 -17.24 5.07 -52.34 -0.27 -17.50 16 10 C 0.17 3.18 3.55 -66.81 -0.24 2.94 16 11 H 0.05 0.91 8.09 -51.93 -0.42 0.49 16 12 C -0.15 -2.31 6.54 -25.07 -0.16 -2.47 16 13 C -0.11 -1.41 6.19 -24.73 -0.15 -1.56 16 14 C -0.10 -1.13 2.89 -88.96 -0.26 -1.38 16 15 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 16 C 0.13 1.37 4.96 -4.04 -0.02 1.35 16 17 N -0.72 -5.67 5.45 -60.29 -0.33 -6.00 16 18 C 0.50 4.77 6.95 -10.99 -0.08 4.69 16 19 O -0.52 -7.75 16.57 5.56 0.09 -7.65 16 20 C 0.10 0.64 4.17 -68.21 -0.28 0.35 16 21 H 0.12 0.35 8.14 -51.92 -0.42 -0.08 16 22 C 0.10 0.45 7.69 -3.16 -0.02 0.43 16 23 N -0.74 -5.31 6.40 -64.61 -0.41 -5.72 16 24 C 0.71 8.00 8.92 -88.12 -0.79 7.22 16 25 O -0.58 -9.23 18.05 5.29 0.10 -9.13 16 26 N -0.71 -6.57 5.61 -59.25 -0.33 -6.91 16 27 C -0.12 -1.77 6.14 -25.62 -0.16 -1.93 16 28 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.38 9.84 7.52 -40.82 -0.31 9.53 16 30 H 0.07 1.35 8.04 -51.93 -0.42 0.94 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 1.01 7.97 -51.93 -0.41 0.60 16 34 H 0.07 1.00 8.02 -51.93 -0.42 0.58 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 1.86 8.44 -40.82 -0.34 1.52 16 37 H 0.10 0.11 8.14 -51.93 -0.42 -0.32 16 38 H 0.09 0.36 7.72 -51.93 -0.40 -0.04 16 39 H 0.43 2.30 8.96 -40.82 -0.37 1.93 16 40 H 0.44 3.88 8.96 -40.82 -0.37 3.52 16 41 H 0.07 1.19 7.32 -51.93 -0.38 0.81 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 348.70 15.07 5.25 5.25 Total: -1.00 -36.71 348.70 -8.94 -45.65 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.34 Total: 9.51 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -2.41 Total: 2.55 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.62 Total: -63.21 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.19 Total: -16.79 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.71 -8.94 -45.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086791174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.621 kcal (2) G-P(sol) polarization free energy of solvation -36.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds