Wall clock time and date at job start Tue Mar 31 2020 03:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99646 * 2 1 4 4 H 1.48496 * 109.47236 * 239.99722 * 3 2 1 5 5 H 1.48507 * 109.47261 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46961 * 119.99536 * 3 2 1 7 7 C 1.38804 * 120.00572 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00085 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.32375 * 35.35418 * 10 9 7 12 12 C 1.53036 * 109.32325 * 154.99532 * 10 9 7 13 13 C 1.53967 * 108.83108 * 175.49518 * 12 10 9 14 14 H 1.09003 * 112.99924 * 169.01009 * 13 12 10 15 15 C 1.55427 * 106.41733 * 293.83158 * 13 12 10 16 16 C 1.55169 * 100.35655 * 73.36799 * 15 13 12 17 17 H 1.08998 * 112.48409 * 163.34807 * 16 15 13 18 18 C 1.52987 * 109.17990 * 275.79325 * 10 9 7 19 19 N 1.47791 * 104.25267 * 40.55156 * 16 15 13 20 20 C 1.34778 * 125.85569 * 153.55994 * 19 16 15 21 21 O 1.21275 * 119.99956 * 0.02562 * 20 19 16 22 22 C 1.50700 * 119.99754 * 179.97438 * 20 19 16 23 23 N 1.46509 * 109.46829 * 180.02562 * 22 20 19 24 24 C 1.34782 * 119.99814 * 180.02562 * 23 22 20 25 25 N 1.34775 * 119.99932 * 180.02562 * 24 23 22 26 26 O 1.21582 * 119.99792 * 0.02562 * 24 23 22 27 27 C 1.47089 * 108.29080 * 333.53839 * 19 16 15 28 28 H 0.96992 * 120.00625 * 0.02562 * 1 2 3 29 29 H 0.97009 * 119.99894 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.57816 * 295.30136 * 12 10 9 31 31 H 1.09002 * 109.57381 * 55.69760 * 12 10 9 32 32 H 1.08998 * 111.23169 * 315.59031 * 15 13 12 33 33 H 1.09003 * 111.27643 * 191.16291 * 15 13 12 34 34 H 1.09002 * 109.53652 * 304.62280 * 18 10 9 35 35 H 1.09003 * 109.53080 * 64.77500 * 18 10 9 36 36 H 1.09001 * 109.47660 * 299.99975 * 22 20 19 37 37 H 1.08997 * 109.47455 * 60.00703 * 22 20 19 38 38 H 0.96992 * 119.99795 * 0.02562 * 23 22 20 39 39 H 0.97001 * 119.99594 * 359.97438 * 25 24 23 40 40 H 0.96996 * 120.00243 * 179.97438 * 25 24 23 41 41 H 1.08993 * 109.97523 * 241.73918 * 27 19 16 42 42 H 1.08995 * 109.97322 * 120.45136 * 27 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7465 -0.0006 6 1 3.1037 1.6965 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9651 -3.5495 0.5957 12 6 1.1781 -4.7497 0.6110 13 6 1.9132 -6.0982 0.5023 14 1 1.4385 -6.8900 1.0818 15 6 2.0111 -6.4242 -1.0143 16 6 3.0997 -5.4073 -1.4485 17 1 3.5350 -5.6510 -2.4176 18 6 2.4360 -4.0190 -1.4370 19 7 4.0858 -5.4378 -0.3481 20 6 5.3967 -5.1434 -0.4544 21 8 5.8601 -4.8180 -1.5269 22 6 6.2864 -5.2175 0.7597 23 7 7.6552 -4.8534 0.3849 24 6 8.6303 -4.8498 1.3154 25 7 9.8893 -4.5143 0.9708 26 8 8.3740 -5.1492 2.4656 27 6 3.3911 -5.8439 0.8831 28 1 -0.4851 0.8399 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 0.9868 -4.5215 1.6594 31 1 0.2341 -4.8037 0.0687 32 1 1.0657 -6.2311 -1.5213 33 1 2.3413 -7.4500 -1.1778 34 1 1.5387 -4.0388 -2.0557 35 1 3.1324 -3.2776 -1.8287 36 1 5.9222 -4.5264 1.5199 37 1 6.2759 -6.2326 1.1564 38 1 7.8596 -4.6149 -0.5327 39 1 10.0937 -4.2758 0.0531 40 1 10.5910 -4.5114 1.6405 41 1 3.4528 -5.0481 1.6253 42 1 3.8363 -6.7572 1.2778 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108615645.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:39 Heat of formation + Delta-G solvation = -74.210063 kcal Electronic energy + Delta-G solvation = -24835.964875 eV Core-core repulsion = 21236.001713 eV Total energy + Delta-G solvation = -3599.963162 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.10669 -40.92785 -39.52771 -36.56811 -35.51956 -34.57602 -34.20637 -32.83681 -32.01120 -29.65283 -28.49733 -26.66892 -25.66149 -23.25433 -22.45879 -22.11784 -20.68844 -20.23716 -19.45891 -19.15075 -18.40279 -17.86552 -17.41371 -16.78500 -16.38152 -16.17935 -16.00747 -15.57208 -15.45844 -15.09692 -14.85135 -14.51603 -14.34046 -13.90304 -13.74758 -13.47920 -13.44542 -13.18490 -12.92182 -12.81611 -12.76610 -12.27845 -12.17062 -11.94358 -11.60341 -11.59152 -11.32413 -11.07016 -10.96800 -10.82492 -10.78630 -10.15753 -9.67336 -9.00958 -7.98180 -5.25321 1.41150 1.42840 1.43062 1.49361 1.56534 2.08431 2.19278 2.51609 3.30140 3.34990 3.53483 3.59146 3.72215 3.77664 4.10987 4.23969 4.26880 4.29750 4.31864 4.41328 4.46345 4.63100 4.66273 4.77806 4.84197 4.92835 5.07405 5.15788 5.20119 5.26134 5.32893 5.38022 5.45083 5.53287 5.58494 5.78281 5.99672 6.25559 6.46478 6.92828 7.00227 7.31343 7.56526 8.09433 8.31874 9.24728 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.005003 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.363819 B = 5594.763938 C = 7234.698917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.962 3.038 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.237 4.237 8 H 0.059 0.941 9 N -0.737 5.737 10 C 0.175 3.825 11 H 0.034 0.966 12 C -0.116 4.116 13 C -0.080 4.080 14 H 0.143 0.857 15 C -0.115 4.115 16 C 0.135 3.865 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.601 5.601 20 C 0.522 3.478 21 O -0.578 6.578 22 C 0.129 3.871 23 N -0.731 5.731 24 C 0.705 3.295 25 N -0.845 5.845 26 O -0.639 6.639 27 C 0.091 3.909 28 H 0.252 0.748 29 H 0.374 0.626 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.017 0.983 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.412 0.588 39 H 0.413 0.587 40 H 0.424 0.576 41 H 0.068 0.932 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.616 -18.114 0.232 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.792 3.208 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.369 4.369 8 H 0.077 0.923 9 N -0.376 5.376 10 C 0.067 3.933 11 H 0.052 0.948 12 C -0.154 4.154 13 C -0.099 4.099 14 H 0.161 0.839 15 C -0.153 4.153 16 C 0.031 3.969 17 H 0.108 0.892 18 C -0.176 4.176 19 N -0.334 5.334 20 C 0.311 3.689 21 O -0.459 6.459 22 C 0.001 3.999 23 N -0.391 5.391 24 C 0.402 3.598 25 N -0.414 5.414 26 O -0.521 6.521 27 C -0.031 4.031 28 H 0.061 0.939 29 H 0.206 0.794 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.110 0.890 37 H 0.134 0.866 38 H 0.250 0.750 39 H 0.244 0.756 40 H 0.257 0.743 41 H 0.086 0.914 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.696 -18.046 0.590 21.513 hybrid contribution 0.452 2.009 -0.823 2.218 sum 12.149 -16.036 -0.233 20.120 Atomic orbital electron populations 1.69769 1.06231 1.26054 1.59489 1.25402 0.96315 1.00548 1.03885 0.85386 0.77442 0.80104 0.77918 1.21089 1.21533 1.20628 1.19390 0.90703 0.85733 1.41098 0.92265 1.42633 1.05420 1.00966 1.88624 1.20497 0.94178 0.85397 0.93221 0.94820 1.22055 0.98617 0.93936 1.00841 1.22668 0.93123 0.97071 0.97032 0.83915 1.23043 0.98023 0.98644 0.95544 1.22318 0.88302 0.95294 0.90951 0.89226 1.22639 0.99133 0.95759 1.00023 1.48585 1.06627 1.65943 1.12207 1.20375 0.82010 0.76465 0.90092 1.90657 1.74530 1.49971 1.30705 1.20841 0.80817 1.04099 0.94147 1.44697 1.07265 1.74165 1.12956 1.16011 0.81913 0.77969 0.83858 1.42733 1.07671 1.74826 1.16206 1.90943 1.83062 1.58162 1.19939 1.22539 0.93371 1.01260 0.85914 0.93933 0.79419 0.91854 0.91450 0.88925 0.88177 0.91914 0.96427 0.88981 0.86584 0.74990 0.75598 0.74260 0.91419 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.31 13.06 21.65 0.28 -59.02 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 3 Si 0.96 47.57 29.55 68.60 2.03 49.60 16 4 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 7 C -0.24 -13.56 9.91 84.03 0.83 -12.73 16 8 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 9 N -0.74 -37.17 5.11 -322.91 -1.65 -38.82 16 10 C 0.18 6.67 2.39 45.00 0.11 6.78 16 11 H 0.03 1.38 5.90 -2.39 -0.01 1.36 16 12 C -0.12 -3.20 4.95 30.93 0.15 -3.05 16 13 C -0.08 -1.41 4.33 -9.05 -0.04 -1.45 16 14 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 15 C -0.11 -2.04 6.18 32.17 0.20 -1.85 16 16 C 0.13 3.58 3.97 45.78 0.18 3.76 16 17 H 0.09 2.46 8.04 -2.39 -0.02 2.44 16 18 C -0.13 -4.85 5.27 30.89 0.16 -4.69 16 19 N -0.60 -15.23 2.36 -784.24 -1.85 -17.09 16 20 C 0.52 14.65 7.93 87.66 0.69 15.34 16 21 O -0.58 -19.87 15.94 -3.01 -0.05 -19.92 16 22 C 0.13 3.06 5.36 85.63 0.46 3.52 16 23 N -0.73 -16.82 5.53 -482.28 -2.67 -19.49 16 24 C 0.70 16.86 8.84 179.05 1.58 18.45 16 25 N -0.85 -12.02 8.88 -184.75 -1.64 -13.66 16 26 O -0.64 -20.59 17.18 -3.98 -0.07 -20.66 16 27 C 0.09 1.75 5.23 86.85 0.45 2.20 16 28 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.37 19.96 7.79 -92.70 -0.72 19.24 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.87 7.97 -2.39 -0.02 1.85 16 32 H 0.09 1.64 7.75 -2.39 -0.02 1.62 16 33 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 2.27 8.00 -2.39 -0.02 2.25 16 35 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 36 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.41 8.89 7.45 -92.71 -0.69 8.20 16 39 H 0.41 3.55 8.84 -92.71 -0.82 2.73 16 40 H 0.42 4.82 8.93 -92.71 -0.83 3.99 16 41 H 0.07 1.51 6.77 -2.39 -0.02 1.49 16 42 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -79.33 339.38 -2.34 -81.66 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -1.98 Total: 34.67 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: 5.26 Total: 22.72 kcal Atomic # 7 Polarization: -140.55 SS G_CDS: -7.53 Total: -148.08 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.12 Total: -40.57 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -79.33 -2.34 -81.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108615645.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.454 kcal (2) G-P(sol) polarization free energy of solvation -79.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds