Wall clock time and date at job start Tue Mar 31 2020 03:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30644 * 128.64026 * 2 1 4 4 O 1.20833 * 109.61966 * 180.02562 * 3 2 1 5 5 N 1.20906 * 115.90838 * 359.73859 * 4 3 2 6 6 C 1.31605 * 109.17605 * 0.42757 * 5 4 3 7 7 C 1.48280 * 128.70904 * 179.88073 * 6 5 4 8 8 O 1.21504 * 119.99736 * 179.67496 * 7 6 5 9 9 N 1.34778 * 120.00048 * 359.67791 * 7 6 5 10 10 C 1.46499 * 119.99771 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47391 * 34.99730 * 10 9 7 12 12 C 1.53002 * 109.46799 * 274.99826 * 10 9 7 13 13 C 1.53000 * 109.46840 * 155.00060 * 10 9 7 14 14 C 1.53005 * 109.46867 * 294.99527 * 13 10 9 15 15 C 1.53008 * 109.46774 * 180.02562 * 14 13 10 16 16 C 1.53005 * 109.46774 * 180.02562 * 15 14 13 17 17 N 1.46492 * 109.46855 * 179.97438 * 16 15 14 18 18 C 1.36934 * 120.00299 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99658 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00555 * 180.02562 * 18 17 16 21 21 N 1.31615 * 119.99515 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99993 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47454 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46994 * 119.99898 * 22 20 18 25 25 H 1.48498 * 109.47188 * 239.99605 * 22 20 18 26 26 H 1.09000 * 109.47031 * 269.97144 * 1 2 3 27 27 H 1.08998 * 109.47708 * 29.97073 * 1 2 3 28 28 H 1.09003 * 109.47289 * 149.97121 * 1 2 3 29 29 H 0.96998 * 119.99599 * 359.97438 * 9 7 6 30 30 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 31 31 H 1.09002 * 109.47075 * 299.99543 * 12 10 9 32 32 H 1.08996 * 109.47407 * 60.00500 * 12 10 9 33 33 H 1.08990 * 109.47170 * 54.99738 * 13 10 9 34 34 H 1.09001 * 109.46952 * 174.99815 * 13 10 9 35 35 H 1.09000 * 109.47443 * 300.00098 * 14 13 10 36 36 H 1.09001 * 109.47099 * 60.00379 * 14 13 10 37 37 H 1.09000 * 109.47044 * 300.00132 * 15 14 13 38 38 H 1.09001 * 109.47171 * 60.00211 * 15 14 13 39 39 H 1.09001 * 109.46908 * 300.00434 * 16 15 14 40 40 H 1.08996 * 109.46687 * 59.99974 * 16 15 14 41 41 H 0.96999 * 120.00405 * 0.02562 * 17 16 15 42 42 H 0.97006 * 119.99411 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6266 -0.0005 5 7 3.6102 -0.5737 0.0041 6 6 2.4280 -1.1520 -0.0007 7 6 2.1034 -2.5988 -0.0004 8 8 0.9436 -2.9612 0.0006 9 7 3.0948 -3.5118 -0.0012 10 6 2.7740 -4.9413 -0.0003 11 1 1.8724 -5.1118 -0.5886 12 6 2.5414 -5.4108 1.4372 13 6 3.9373 -5.7253 -0.6109 14 6 4.0900 -5.3457 -2.0852 15 6 5.2530 -6.1302 -2.6961 16 6 5.4060 -5.7501 -4.1702 17 7 6.5199 -6.5008 -4.7549 18 6 6.8479 -6.3240 -6.0726 19 1 6.2852 -5.6314 -6.6809 20 6 7.9030 -7.0357 -6.6268 21 7 8.5884 -7.8801 -5.8855 22 14 8.3499 -6.7950 -8.4245 23 1 7.4326 -5.7986 -9.0335 24 1 9.7489 -6.3073 -8.5257 25 1 8.2233 -8.0881 -9.1435 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5133 28 1 -0.3634 -0.8897 -0.5143 29 1 4.0206 -3.2224 -0.0023 30 1 2.3032 -6.4745 1.4380 31 1 3.4430 -5.2404 2.0255 32 1 1.7126 -4.8523 1.8723 33 1 4.8568 -5.4859 -0.0770 34 1 3.7377 -6.7938 -0.5297 35 1 3.1704 -5.5852 -2.6192 36 1 4.2896 -4.2772 -2.1665 37 1 6.1727 -5.8911 -2.1622 38 1 5.0529 -7.1986 -2.6148 39 1 4.4863 -5.9888 -4.7043 40 1 5.6062 -4.6818 -4.2510 41 1 7.0251 -7.1231 -4.2087 42 1 9.3255 -8.3777 -6.2730 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176848604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:09 Heat of formation + Delta-G solvation = 65.341621 kcal Electronic energy + Delta-G solvation = -23092.708655 eV Core-core repulsion = 19498.796908 eV Total energy + Delta-G solvation = -3593.911747 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.26372 -40.28802 -37.22527 -35.63490 -35.30880 -35.08193 -33.32458 -31.70654 -30.39257 -29.76599 -27.50970 -26.29527 -24.25013 -23.04589 -22.38588 -21.44296 -20.91004 -20.69742 -19.42816 -18.81031 -17.52569 -17.02114 -16.68107 -15.46754 -15.20655 -14.88033 -14.67265 -14.43214 -14.08312 -13.95054 -13.79223 -13.60440 -13.19478 -13.04277 -12.99410 -12.51003 -12.37624 -12.26859 -11.84347 -11.62915 -11.51136 -11.34059 -11.06502 -10.84213 -10.77183 -10.74393 -10.68596 -10.44042 -10.33536 -9.97851 -9.69285 -9.50143 -8.86213 -6.90269 -5.75475 -3.03825 0.36053 0.91263 2.25307 2.54367 2.96868 3.03607 3.44063 3.48477 3.49545 3.51992 4.25772 4.35151 4.47966 4.62725 4.69714 4.76724 4.87626 5.00246 5.15595 5.16444 5.28246 5.35170 5.48352 5.53318 5.56181 5.61444 5.69690 5.79665 5.86371 6.02480 6.03231 6.26026 6.26937 6.36641 6.44044 6.88294 6.92181 6.93273 7.56291 7.71691 8.04446 8.44013 9.54818 10.13842 10.48395 11.47759 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.002592 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.296827 B =10799.880980 C =11866.649950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.061 3.939 3 N -0.357 5.357 4 O 0.345 5.655 5 N -0.317 5.317 6 C -0.045 4.045 7 C 0.608 3.392 8 O -0.513 6.513 9 N -0.700 5.700 10 C 0.140 3.860 11 H 0.095 0.905 12 C -0.164 4.164 13 C -0.128 4.128 14 C -0.116 4.116 15 C -0.126 4.126 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.409 0.591 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.185 12.780 18.482 27.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 N -0.083 5.083 4 O 0.119 5.881 5 N -0.037 5.037 6 C -0.211 4.211 7 C 0.390 3.610 8 O -0.387 6.387 9 N -0.352 5.352 10 C 0.037 3.963 11 H 0.113 0.887 12 C -0.223 4.223 13 C -0.166 4.166 14 C -0.154 4.154 15 C -0.163 4.163 16 C 0.025 3.975 17 N -0.379 5.379 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.244 0.756 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.217 0.783 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.077 13.231 18.309 27.726 hybrid contribution 0.414 -0.460 -0.848 1.050 sum -15.663 12.771 17.461 26.708 Atomic orbital electron populations 1.20356 0.82854 1.05405 1.04726 1.26259 1.00412 0.85103 0.98670 1.75082 0.91142 1.23987 1.18075 1.85083 1.23307 1.16554 1.63193 1.75389 1.22987 0.92922 1.12417 1.26106 0.88198 0.98516 1.08294 1.16426 0.85734 0.81464 0.77328 1.90820 1.18833 1.79491 1.49571 1.45999 1.09506 1.06658 1.73078 1.21226 0.99923 0.77832 0.97298 0.88700 1.22193 1.02208 1.01995 0.95868 1.21965 0.97338 1.00609 0.96667 1.21544 0.99423 1.00320 0.94107 1.21725 0.97521 0.99966 0.97130 1.20643 0.91403 0.94790 0.90687 1.42391 1.35671 1.50053 1.09782 1.19298 1.11261 1.19408 0.86956 0.91191 1.24753 0.98741 0.99499 0.98213 1.69675 1.23386 1.30172 1.35135 0.86106 0.77939 0.77250 0.84867 1.20551 1.21838 1.21846 0.88825 0.89342 0.87899 0.75555 0.90985 0.92245 0.92131 0.91084 0.89699 0.91847 0.92214 0.92055 0.91948 0.96578 0.96656 0.78342 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.22 36.01 0.37 -0.10 16 2 C 0.06 0.56 7.79 -79.33 -0.62 -0.06 16 3 N -0.36 -3.50 12.22 33.75 0.41 -3.08 16 4 O 0.34 3.41 11.65 27.27 0.32 3.72 16 5 N -0.32 -3.22 12.13 33.49 0.41 -2.81 16 6 C -0.05 -0.46 7.56 -80.07 -0.61 -1.06 16 7 C 0.61 6.39 7.81 -12.13 -0.09 6.29 16 8 O -0.51 -6.29 15.62 5.36 0.08 -6.20 16 9 N -0.70 -6.37 4.53 -54.61 -0.25 -6.62 16 10 C 0.14 1.23 2.57 -67.93 -0.17 1.05 16 11 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 12 C -0.16 -1.25 9.48 37.16 0.35 -0.90 16 13 C -0.13 -1.16 4.75 -26.73 -0.13 -1.29 16 14 C -0.12 -1.38 5.10 -26.72 -0.14 -1.52 16 15 C -0.13 -1.97 5.33 -26.72 -0.14 -2.11 16 16 C 0.15 3.14 6.26 -4.04 -0.03 3.12 16 17 N -0.74 -19.26 5.60 -59.91 -0.34 -19.60 16 18 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 19 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 21 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 22 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.10 0.69 7.31 -51.93 -0.38 0.31 16 29 H 0.41 3.38 8.46 -40.82 -0.35 3.03 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.38 10.45 7.67 -40.82 -0.31 10.13 16 42 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -32.74 360.67 -6.13 -38.87 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.45 Total: 4.76 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.45 Total: -4.17 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 0.96 Total: -60.18 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: 0.40 Total: -2.48 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.74 -6.13 -38.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176848604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.209 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds