Wall clock time and date at job start Tue Mar 31 2020 03:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30650 * 128.64030 * 2 1 4 4 O 1.20848 * 109.61550 * 180.02562 * 3 2 1 5 5 N 1.20905 * 115.90599 * 359.68873 * 4 3 2 6 6 C 1.31601 * 109.18332 * 0.50001 * 5 4 3 7 7 C 1.48276 * 128.71392 * 179.81794 * 6 5 4 8 8 O 1.21501 * 119.99839 * 179.67704 * 7 6 5 9 9 N 1.34773 * 119.99813 * 359.68330 * 7 6 5 10 10 C 1.46506 * 119.99969 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47237 * 179.72043 * 10 9 7 12 12 C 1.52996 * 109.46929 * 179.97438 * 11 10 9 13 13 C 1.53008 * 109.46808 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.46807 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.46927 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47241 * 179.97438 * 15 14 13 17 17 C 1.36936 * 120.00313 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99823 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00076 * 179.97438 * 17 16 15 20 20 N 1.31611 * 120.00111 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99656 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47203 * 90.00363 * 21 19 17 23 23 H 1.48500 * 109.47131 * 209.99961 * 21 19 17 24 24 H 1.48498 * 109.47364 * 330.00117 * 21 19 17 25 25 H 1.08993 * 109.47176 * 269.97863 * 1 2 3 26 26 H 1.09007 * 109.46510 * 29.98044 * 1 2 3 27 27 H 1.08995 * 109.46955 * 149.97408 * 1 2 3 28 28 H 0.97005 * 120.00161 * 359.71936 * 9 7 6 29 29 H 1.09001 * 109.46512 * 299.72412 * 10 9 7 30 30 H 1.08998 * 109.47174 * 59.71534 * 10 9 7 31 31 H 1.09000 * 109.46986 * 299.99958 * 11 10 9 32 32 H 1.09002 * 109.46857 * 60.00093 * 11 10 9 33 33 H 1.09000 * 109.47441 * 299.99910 * 12 11 10 34 34 H 1.08994 * 109.47235 * 60.00181 * 12 11 10 35 35 H 1.08996 * 109.46961 * 299.99496 * 13 12 11 36 36 H 1.08994 * 109.47402 * 59.99882 * 13 12 11 37 37 H 1.08996 * 109.46626 * 299.99306 * 14 13 12 38 38 H 1.08994 * 109.47559 * 59.99583 * 14 13 12 39 39 H 1.09004 * 109.47105 * 299.99753 * 15 14 13 40 40 H 1.08994 * 109.47339 * 59.99452 * 15 14 13 41 41 H 0.97005 * 119.99806 * 359.97438 * 16 15 14 42 42 H 0.97000 * 120.00324 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4653 0.6265 -0.0005 5 7 3.6101 -0.5738 0.0050 6 6 2.4280 -1.1520 -0.0005 7 6 2.1033 -2.5988 -0.0008 8 8 0.9436 -2.9612 -0.0005 9 7 3.0947 -3.5119 -0.0013 10 6 2.7739 -4.9414 -0.0010 11 6 4.0697 -5.7548 -0.0087 12 6 3.7347 -7.2477 -0.0077 13 6 5.0306 -8.0611 -0.0148 14 6 4.6955 -9.5541 -0.0145 15 6 5.9913 -10.3675 -0.0222 16 7 5.6706 -11.7969 -0.0213 17 6 6.6778 -12.7247 -0.0280 18 1 7.7086 -12.4025 -0.0343 19 6 6.3738 -14.0791 -0.0266 20 7 5.1176 -14.4717 -0.0193 21 14 7.7478 -15.3446 -0.0364 22 1 8.1213 -15.6807 1.3611 23 1 7.2858 -16.5715 -0.7339 24 1 8.9286 -14.7878 -0.7441 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3632 0.8902 -0.5136 27 1 -0.3633 -0.8897 -0.5142 28 1 4.0206 -3.2226 -0.0055 29 1 2.1977 -5.1842 0.8918 30 1 2.1882 -5.1825 -0.8881 31 1 4.6459 -5.5119 -0.9015 32 1 4.6553 -5.5137 0.8785 33 1 3.1587 -7.4903 0.8853 34 1 3.1489 -7.4891 -0.8946 35 1 5.6069 -7.8187 -0.9076 36 1 5.6161 -7.8196 0.8723 37 1 4.1191 -9.7968 0.8782 38 1 4.1102 -9.7953 -0.9017 39 1 6.5675 -10.1246 -0.9150 40 1 6.5770 -10.1263 0.8648 41 1 4.7447 -12.0862 -0.0159 42 1 4.9052 -15.4181 -0.0187 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180478775.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:04 Heat of formation + Delta-G solvation = 38.880161 kcal Electronic energy + Delta-G solvation = -21956.244198 eV Core-core repulsion = 18361.184996 eV Total energy + Delta-G solvation = -3595.059202 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.02107 -40.94876 -37.95943 -36.90029 -36.28716 -35.90928 -35.31502 -33.53325 -31.64491 -30.46160 -28.64236 -26.91642 -25.52245 -23.83399 -23.55390 -22.31644 -22.09994 -21.62402 -20.19578 -19.59490 -19.10858 -18.21452 -17.21342 -17.13361 -16.66403 -16.40773 -15.62997 -15.43199 -15.37939 -15.20676 -15.08271 -14.47059 -14.41488 -14.12812 -13.91881 -13.46190 -13.06239 -13.05185 -12.97577 -12.96163 -12.68127 -12.41339 -12.33960 -12.18361 -12.03931 -11.82905 -11.80344 -11.71023 -11.44278 -11.33917 -11.33539 -10.93746 -10.34509 -9.01707 -7.96784 -5.26281 -0.44642 0.18641 1.45390 1.46661 1.49014 1.57618 1.70344 2.23012 2.31078 2.55389 2.74278 3.36640 3.53037 3.65286 3.68483 3.99772 4.00983 4.05260 4.24165 4.28188 4.32355 4.57081 4.59340 4.62506 4.68259 4.76039 4.82311 4.94835 4.96034 5.05453 5.06537 5.13149 5.19266 5.28383 5.37840 5.47554 5.54184 5.57344 6.12929 6.26043 6.75389 7.27913 7.31473 8.08796 8.31590 9.26970 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.055004 B = 0.001583 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.934234 B =17686.051453 C =18148.017033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.064 3.936 3 N -0.365 5.365 4 O 0.344 5.656 5 N -0.319 5.319 6 C -0.055 4.055 7 C 0.605 3.395 8 O -0.536 6.536 9 N -0.699 5.699 10 C 0.119 3.881 11 C -0.121 4.121 12 C -0.112 4.112 13 C -0.105 4.105 14 C -0.116 4.116 15 C 0.147 3.853 16 N -0.751 5.751 17 C -0.252 4.252 18 H 0.076 0.924 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.977 3.023 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.269 1.269 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.417 0.583 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.373 0.627 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.379 33.385 0.039 34.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.101 4.101 3 N -0.092 5.092 4 O 0.119 5.881 5 N -0.039 5.039 6 C -0.220 4.220 7 C 0.388 3.612 8 O -0.412 6.412 9 N -0.351 5.351 10 C -0.003 4.003 11 C -0.159 4.159 12 C -0.150 4.150 13 C -0.143 4.143 14 C -0.154 4.154 15 C 0.021 3.979 16 N -0.394 5.394 17 C -0.384 4.384 18 H 0.093 0.907 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.806 3.194 22 H -0.212 1.212 23 H -0.220 1.220 24 H -0.194 1.194 25 H 0.126 0.874 26 H 0.124 0.876 27 H 0.116 0.884 28 H 0.254 0.746 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.205 0.795 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.053 33.731 0.038 34.460 hybrid contribution 0.105 -1.550 0.014 1.553 sum -6.948 32.181 0.051 32.923 Atomic orbital electron populations 1.20509 0.81105 1.05973 1.05842 1.26706 1.01465 0.84500 0.97476 1.75108 0.91151 1.24139 1.18778 1.85073 1.23472 1.16372 1.63207 1.75336 1.22992 0.93105 1.12426 1.26061 0.88640 0.98366 1.08970 1.16510 0.85528 0.81867 0.77335 1.90831 1.19816 1.79931 1.50624 1.45860 1.09754 1.06866 1.72605 1.21579 0.98619 0.77146 1.02965 1.21722 0.95997 0.94130 1.04047 1.21436 0.97354 0.93390 1.02808 1.21427 0.98009 0.92223 1.02652 1.21636 0.96554 0.95768 1.01482 1.20887 0.96544 0.83088 0.97399 1.42662 1.05729 1.01502 1.89467 1.19699 0.89253 0.87901 1.41506 0.90651 1.25635 0.98696 0.99103 1.03528 1.69820 1.18026 1.14860 1.59403 0.85084 0.78476 0.78313 0.77542 1.21230 1.21989 1.19358 0.87441 0.87600 0.88358 0.74603 0.90951 0.90955 0.90111 0.90112 0.91536 0.91533 0.91381 0.91371 0.92622 0.92620 0.96370 0.96374 0.79543 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.22 71.24 0.73 0.07 16 2 C 0.06 0.90 7.79 45.18 0.35 1.25 16 3 N -0.36 -5.53 12.22 -51.77 -0.63 -6.16 16 4 O 0.34 5.15 11.65 140.84 1.64 6.79 16 5 N -0.32 -4.82 12.13 -52.03 -0.63 -5.45 16 6 C -0.06 -0.87 7.56 44.29 0.34 -0.53 16 7 C 0.61 10.42 7.85 86.91 0.68 11.10 16 8 O -0.54 -11.84 15.96 -3.72 -0.06 -11.90 16 9 N -0.70 -9.28 5.55 -465.55 -2.59 -11.87 16 10 C 0.12 1.59 5.67 86.38 0.49 2.08 16 11 C -0.12 -1.43 5.33 30.59 0.16 -1.27 16 12 C -0.11 -1.84 5.21 30.60 0.16 -1.68 16 13 C -0.11 -2.25 5.22 30.60 0.16 -2.09 16 14 C -0.12 -3.60 5.33 30.60 0.16 -3.44 16 15 C 0.15 5.95 6.26 86.38 0.54 6.50 16 16 N -0.75 -39.62 5.60 -343.46 -1.92 -41.55 16 17 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 18 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 19 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 20 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 21 Si 0.98 46.60 29.55 68.60 2.03 48.62 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.10 0.97 7.31 -2.39 -0.02 0.96 16 28 H 0.42 4.11 8.33 -92.70 -0.77 3.34 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.37 20.80 7.67 -92.70 -0.71 20.09 16 42 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -69.80 362.41 2.75 -67.05 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.45 Total: 20.37 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.08 Total: -5.75 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -5.49 Total: -125.18 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: 1.58 Total: -5.11 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -69.80 2.75 -67.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180478775.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.925 kcal (2) G-P(sol) polarization free energy of solvation -69.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds