Wall clock time and date at job start Tue Mar 31 2020 03:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99563 * 2 1 4 4 H 1.48500 * 109.46851 * 269.99372 * 3 2 1 5 5 H 1.48492 * 109.47583 * 29.99747 * 3 2 1 6 6 H 1.48506 * 109.47083 * 149.99921 * 3 2 1 7 7 C 1.38807 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00094 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00259 * 180.02562 * 7 2 1 10 10 C 1.46493 * 120.00129 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.94823 * 336.39602 * 10 9 7 12 12 C 1.53950 * 113.66641 * 107.80723 * 10 9 7 13 13 C 1.53950 * 87.29389 * 89.73870 * 12 10 9 14 14 H 1.09002 * 113.66652 * 139.20858 * 13 12 10 15 15 N 1.46505 * 113.66045 * 270.26357 * 13 12 10 16 16 C 1.34785 * 119.99639 * 252.18907 * 15 13 12 17 17 O 1.21274 * 120.00146 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99471 * 180.02562 * 16 15 13 19 19 N 1.46506 * 109.46993 * 179.97438 * 18 16 15 20 20 C 1.34770 * 120.00387 * 179.97438 * 19 18 16 21 21 N 1.34774 * 120.00501 * 179.97438 * 20 19 18 22 22 O 1.21593 * 119.99663 * 0.02562 * 20 19 18 23 23 C 1.52910 * 86.78717 * 24.73347 * 13 12 10 24 24 C 1.52907 * 121.13351 * 100.81454 * 23 13 12 25 25 C 1.53951 * 86.77862 * 100.82528 * 24 23 13 26 26 C 1.52903 * 121.13886 * 209.38108 * 23 13 12 27 27 H 0.96993 * 120.00441 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99340 * 359.97438 * 9 7 2 29 29 H 1.09001 * 113.58096 * 204.33650 * 12 10 9 30 30 H 1.08998 * 113.57668 * 335.13598 * 12 10 9 31 31 H 0.96998 * 120.00313 * 72.19171 * 15 13 12 32 32 H 1.08999 * 109.47231 * 299.99457 * 18 16 15 33 33 H 1.08997 * 109.47477 * 60.00089 * 18 16 15 34 34 H 0.96998 * 119.99603 * 359.97438 * 19 18 16 35 35 H 0.96998 * 119.99489 * 359.97438 * 21 20 19 36 36 H 0.96992 * 120.00260 * 179.97438 * 21 20 19 37 37 H 1.08995 * 113.66604 * 215.29469 * 24 23 13 38 38 H 1.08996 * 113.66613 * 346.35541 * 24 23 13 39 39 H 1.09000 * 113.58140 * 270.13184 * 25 24 23 40 40 H 1.09008 * 113.58062 * 139.33642 * 25 24 23 41 41 H 1.08999 * 113.66373 * 13.65529 * 26 23 13 42 42 H 1.09000 * 113.66011 * 144.70603 * 26 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5281 -3.2987 0.4026 12 6 4.7952 -2.7899 -1.3412 13 6 6.0282 -2.0369 -0.8096 14 1 6.9747 -2.5183 -1.0558 15 7 6.0194 -0.6042 -1.1159 16 6 6.8623 -0.1083 -2.0434 17 8 7.6283 -0.8478 -2.6239 18 6 6.8536 1.3655 -2.3580 19 7 7.8533 1.6503 -3.3905 20 6 8.0241 2.9116 -3.8335 21 7 8.9440 3.1737 -4.7829 22 8 7.3488 3.8133 -3.3759 23 6 5.5182 -2.3675 0.5935 24 6 6.1210 -3.5157 1.4036 25 6 6.9189 -2.4431 2.1670 26 6 5.8112 -1.4469 1.7787 27 1 -0.4850 0.8399 -0.0004 28 1 3.8646 -0.3619 0.0007 29 1 4.9692 -3.8542 -1.4997 30 1 4.3237 -2.3056 -2.1963 31 1 5.4070 -0.0127 -0.6513 32 1 5.8663 1.6543 -2.7183 33 1 7.0913 1.9308 -1.4569 34 1 8.3922 0.9310 -3.7552 35 1 9.4834 2.4545 -5.1471 36 1 9.0667 4.0814 -5.1020 37 1 5.3948 -4.0434 2.0219 38 1 6.7444 -4.1874 0.8136 39 1 7.8859 -2.2168 1.7177 40 1 6.9828 -2.6279 3.2394 41 1 6.1872 -0.4659 1.4881 42 1 4.9979 -1.3931 2.5023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202446458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:42 Heat of formation + Delta-G solvation = -30.003811 kcal Electronic energy + Delta-G solvation = -24751.713882 eV Core-core repulsion = 21153.667647 eV Total energy + Delta-G solvation = -3598.046235 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.14735 -41.08678 -39.99266 -36.82532 -35.65698 -35.38880 -34.56859 -33.98081 -32.36199 -28.96714 -26.83410 -26.10527 -25.36746 -24.20484 -22.30316 -21.74388 -21.52990 -20.43526 -19.63219 -19.05829 -18.32315 -17.67599 -17.13472 -16.90637 -16.69724 -16.48557 -16.02408 -15.82920 -15.68821 -15.39574 -15.15143 -14.71343 -14.24755 -14.01679 -13.98108 -13.76706 -13.29639 -13.16020 -12.99146 -12.75367 -12.58824 -12.18200 -11.94289 -11.85062 -11.64066 -11.39761 -11.26503 -11.04107 -10.86036 -10.81563 -10.72950 -10.21482 -10.02261 -9.29198 -8.03647 -5.37114 1.30285 1.33630 1.37117 1.44190 1.51513 2.06382 2.19218 2.44994 3.23577 3.27062 3.40497 3.54531 3.62024 3.76807 3.91344 3.98110 4.04967 4.20116 4.22081 4.27196 4.54855 4.63719 4.73573 4.84642 4.96312 4.98775 5.07692 5.12307 5.16642 5.17646 5.20640 5.47234 5.53842 5.61911 5.77952 5.79858 5.97869 6.20689 6.28970 6.90943 6.98276 7.05960 7.55262 7.81430 7.98435 9.17676 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.005733 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.264867 B = 4883.055464 C = 6601.019809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.057 4.057 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.242 1.242 7 C -0.228 4.228 8 H 0.061 0.939 9 N -0.725 5.725 10 C 0.164 3.836 11 H 0.064 0.936 12 C -0.177 4.177 13 C 0.155 3.845 14 H 0.109 0.891 15 N -0.699 5.699 16 C 0.521 3.479 17 O -0.558 6.558 18 C 0.114 3.886 19 N -0.724 5.724 20 C 0.703 3.297 21 N -0.842 5.842 22 O -0.643 6.643 23 C -0.125 4.125 24 C -0.094 4.094 25 C -0.126 4.126 26 C -0.130 4.130 27 H 0.257 0.743 28 H 0.360 0.640 29 H 0.107 0.893 30 H 0.049 0.951 31 H 0.400 0.600 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.416 0.584 35 H 0.415 0.585 36 H 0.424 0.576 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.613 -1.931 -3.198 22.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.249 4.249 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.166 1.166 7 C -0.359 4.359 8 H 0.079 0.921 9 N -0.367 5.367 10 C 0.054 3.946 11 H 0.082 0.918 12 C -0.218 4.218 13 C 0.050 3.950 14 H 0.127 0.873 15 N -0.350 5.350 16 C 0.307 3.693 17 O -0.437 6.437 18 C -0.015 4.015 19 N -0.384 5.384 20 C 0.400 3.600 21 N -0.412 5.412 22 O -0.525 6.525 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.163 4.163 26 C -0.168 4.168 27 H 0.066 0.934 28 H 0.195 0.805 29 H 0.126 0.874 30 H 0.068 0.932 31 H 0.236 0.764 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.255 0.745 35 H 0.246 0.754 36 H 0.257 0.743 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 22.302 -1.907 -3.125 22.601 hybrid contribution -0.342 1.233 -0.388 1.337 sum 21.960 -0.674 -3.513 22.250 Atomic orbital electron populations 1.69856 1.07092 1.26544 1.59672 1.25388 0.95947 1.00775 1.02799 0.85769 0.79505 0.80448 0.78404 1.20309 1.22392 1.16602 1.19037 0.82361 0.93469 1.40989 0.92143 1.42347 1.02147 1.03022 1.89152 1.21276 0.90906 0.87992 0.94395 0.91770 1.24195 0.97141 1.01125 0.99376 1.21507 0.99111 0.80005 0.94360 0.87333 1.45714 1.38988 1.09773 1.40520 1.20501 0.79653 0.90222 0.78886 1.90643 1.40926 1.60661 1.51487 1.20904 0.94500 0.92118 0.93960 1.44546 1.42085 1.08628 1.43166 1.16065 0.81106 0.82379 0.80436 1.42693 1.40791 1.15232 1.42437 1.90972 1.51928 1.46098 1.63457 1.23427 0.95785 1.00525 0.92991 1.22520 0.98779 0.94813 0.97126 1.22789 0.97138 0.95519 1.00871 1.22610 0.99221 0.97695 0.97254 0.93406 0.80510 0.87431 0.93219 0.76385 0.88841 0.87258 0.74533 0.75412 0.74278 0.89041 0.89484 0.89684 0.90329 0.92218 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.99 13.97 21.65 0.30 -61.69 16 2 C -0.06 -3.29 5.50 84.86 0.47 -2.83 16 3 Si 0.93 43.61 27.74 68.60 1.90 45.52 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.24 -9.71 6.52 99.48 0.65 -9.07 16 7 C -0.23 -12.41 10.45 84.03 0.88 -11.53 16 8 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 9 N -0.72 -31.13 4.78 -321.57 -1.54 -32.66 16 10 C 0.16 5.67 4.36 45.29 0.20 5.87 16 11 H 0.06 2.34 8.10 -2.39 -0.02 2.32 16 12 C -0.18 -5.40 7.68 31.23 0.24 -5.16 16 13 C 0.16 4.18 4.12 45.28 0.19 4.36 16 14 H 0.11 2.76 7.47 -2.39 -0.02 2.75 16 15 N -0.70 -19.38 4.69 -441.14 -2.07 -21.45 16 16 C 0.52 13.88 7.90 87.66 0.69 14.58 16 17 O -0.56 -16.39 15.27 -3.01 -0.05 -16.44 16 18 C 0.11 2.80 6.15 85.63 0.53 3.32 16 19 N -0.72 -15.75 5.53 -482.29 -2.67 -18.42 16 20 C 0.70 16.64 8.84 179.06 1.58 18.22 16 21 N -0.84 -11.06 8.88 -184.75 -1.64 -12.70 16 22 O -0.64 -21.58 17.18 -4.01 -0.07 -21.65 16 23 C -0.13 -3.28 0.78 -52.31 -0.04 -3.32 16 24 C -0.09 -1.89 7.84 30.88 0.24 -1.64 16 25 C -0.13 -2.41 8.08 31.23 0.25 -2.16 16 26 C -0.13 -3.32 7.27 30.88 0.22 -3.10 16 27 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.36 14.62 3.19 -92.71 -0.30 14.32 16 29 H 0.11 2.74 8.14 -2.39 -0.02 2.73 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.40 11.72 5.94 -92.71 -0.55 11.17 16 32 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.42 7.71 7.45 -92.71 -0.69 7.02 16 35 H 0.41 2.76 8.84 -92.71 -0.82 1.94 16 36 H 0.42 4.54 8.93 -92.71 -0.83 3.71 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.06 1.52 7.58 -2.39 -0.02 1.50 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -74.50 344.90 -2.52 -77.03 By element: Atomic # 1 Polarization: 48.01 SS G_CDS: -2.15 Total: 45.86 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 5.45 Total: 16.61 kcal Atomic # 7 Polarization: -139.32 SS G_CDS: -7.61 Total: -146.93 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.11 Total: -38.09 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.90 Total: 45.52 kcal Total: -74.50 -2.52 -77.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202446458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.023 kcal (2) G-P(sol) polarization free energy of solvation -74.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds