Wall clock time and date at job start Tue Mar 31 2020 03:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50702 * 119.99887 * 2 1 4 4 O 1.42906 * 109.47281 * 134.99713 * 3 2 1 5 5 C 1.42900 * 113.99983 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46937 * 180.02562 * 5 4 3 7 7 O 1.21278 * 120.00137 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99861 * 180.02562 * 6 5 4 9 9 C 1.44957 * 117.34091 * 357.48413 * 8 6 5 10 10 C 1.51958 * 111.93944 * 203.73622 * 9 8 6 11 11 O 1.41321 * 111.60852 * 319.69088 * 10 9 8 12 12 C 1.40858 * 118.30392 * 56.89959 * 11 10 9 13 13 H 1.09006 * 109.54036 * 187.74138 * 12 11 10 14 14 C 1.53922 * 110.46192 * 68.18931 * 12 11 10 15 15 N 1.46770 * 107.62127 * 221.67337 * 14 12 11 16 16 C 1.36936 * 125.36178 * 178.66083 * 15 14 12 17 17 H 1.07999 * 119.99862 * 186.19730 * 16 15 14 18 18 C 1.38812 * 120.00013 * 6.20360 * 16 15 14 19 19 N 1.31620 * 120.00309 * 7.53468 * 18 16 15 20 20 Si 1.86801 * 120.00139 * 187.52811 * 18 16 15 21 21 H 1.48497 * 109.47787 * 265.01620 * 20 18 16 22 22 H 1.48500 * 109.47193 * 145.00856 * 20 18 16 23 23 H 1.48514 * 109.46795 * 25.01629 * 20 18 16 24 24 C 1.46869 * 109.27459 * 358.40009 * 15 14 12 25 25 C 1.44552 * 117.33680 * 177.46457 * 8 6 5 26 26 H 1.08999 * 109.64451 * 285.98465 * 25 8 6 27 27 H 1.08004 * 120.00024 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00495 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00495 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47200 * 14.99967 * 3 2 1 31 31 H 1.08993 * 109.47475 * 255.00159 * 3 2 1 32 32 H 1.09000 * 109.46922 * 60.00281 * 5 4 3 33 33 H 1.08999 * 109.47513 * 300.00210 * 5 4 3 34 34 H 1.09004 * 108.98465 * 324.36267 * 9 8 6 35 35 H 1.09000 * 108.99014 * 83.18266 * 9 8 6 36 36 H 1.09000 * 109.05709 * 80.24342 * 10 9 8 37 37 H 1.09003 * 109.05205 * 199.21882 * 10 9 8 38 38 H 1.09000 * 109.95121 * 102.07694 * 14 12 11 39 39 H 1.08997 * 109.70371 * 341.12874 * 14 12 11 40 40 H 0.97001 * 120.00397 * 180.02562 * 19 18 16 41 41 H 1.09000 * 110.06643 * 137.29252 * 24 15 14 42 42 H 1.08998 * 110.06732 * 258.76359 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9083 2.4350 1.0321 6 6 4.9945 2.2566 2.0613 7 8 5.0902 1.2102 2.6668 8 7 5.8597 3.2599 2.3088 9 6 5.7277 4.4643 1.5130 10 6 7.0277 5.2487 1.4504 11 8 7.6882 5.2620 2.6997 12 6 8.0129 4.0281 3.2966 13 1 8.3886 4.1989 4.3055 14 6 9.1025 3.3070 2.4831 15 7 8.7415 1.8858 2.4186 16 6 9.4496 0.9174 1.7584 17 1 9.0531 -0.0843 1.6826 18 6 10.6769 1.2233 1.1867 19 7 11.2297 2.3979 1.4036 20 14 11.5444 -0.0324 0.1095 21 1 12.5164 -0.8002 0.9286 22 1 12.2634 0.6672 -0.9854 23 1 10.5428 -0.9625 -0.4713 24 6 7.5045 1.6649 3.1790 25 6 6.8433 3.0474 3.3465 26 1 6.3641 3.1083 4.3236 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9352 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3854 2.1161 0.2660 31 1 2.4754 1.4869 -0.9926 32 1 3.2688 3.2697 1.3192 33 1 4.3586 2.6397 0.0608 34 1 5.4301 4.1898 0.5010 35 1 4.9546 5.0958 1.9508 36 1 7.6821 4.7941 0.7067 37 1 6.8103 6.2746 1.1532 38 1 10.0694 3.4209 2.9734 39 1 9.1460 3.7234 1.4768 40 1 12.0872 2.6118 1.0038 41 1 6.8414 0.9974 2.6287 42 1 7.7366 1.2397 4.1554 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217550118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:01 Heat of formation + Delta-G solvation = -65.679960 kcal Electronic energy + Delta-G solvation = -25157.841355 eV Core-core repulsion = 21525.955335 eV Total energy + Delta-G solvation = -3631.886020 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.18714 -40.01994 -38.69255 -37.61768 -36.17962 -34.80871 -34.32510 -31.73690 -30.27693 -29.56104 -28.32126 -26.70493 -26.13520 -24.63244 -22.79988 -21.60076 -20.87845 -19.94497 -19.16760 -18.41767 -18.27041 -17.73282 -17.31670 -17.02223 -16.61164 -16.35341 -16.12196 -15.80919 -15.63675 -15.28458 -15.10297 -14.44658 -14.25800 -13.99771 -13.86454 -13.50448 -13.23468 -13.14362 -13.07052 -12.80630 -12.77603 -12.41623 -12.16775 -12.14108 -11.88023 -11.84131 -11.70901 -10.95313 -10.85223 -10.79636 -10.32654 -10.21264 -9.58290 -8.90695 -7.89614 -5.27814 1.18746 1.40856 1.42317 1.48372 1.52581 1.69721 2.43902 2.70886 2.91959 3.26156 3.37433 3.58133 3.69473 3.75259 3.91512 4.04054 4.06364 4.15124 4.16469 4.22010 4.28860 4.38310 4.46037 4.48294 4.54505 4.61434 4.72394 4.86166 4.98744 4.99981 5.07978 5.32318 5.47422 5.59265 5.64065 5.66452 5.70358 6.03724 6.14654 6.27413 6.42239 7.04120 7.12218 7.71039 8.33253 9.18152 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.014159 B = 0.004791 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.121649 B = 5843.339457 C = 7113.013921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.181 4.181 3 C 0.084 3.916 4 O -0.398 6.398 5 C 0.053 3.947 6 C 0.496 3.504 7 O -0.557 6.557 8 N -0.588 5.588 9 C 0.070 3.930 10 C 0.049 3.951 11 O -0.371 6.371 12 C 0.087 3.913 13 H 0.127 0.873 14 C 0.159 3.841 15 N -0.617 5.617 16 C -0.246 4.246 17 H 0.069 0.931 18 C -0.058 4.058 19 N -0.945 5.945 20 Si 0.977 3.023 21 H -0.284 1.284 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.106 3.894 25 C 0.124 3.876 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.028 0.972 37 H 0.150 0.850 38 H 0.031 0.969 39 H 0.010 0.990 40 H 0.249 0.751 41 H 0.069 0.931 42 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.459 7.859 -3.687 22.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.199 4.199 3 C 0.008 3.992 4 O -0.318 6.318 5 C -0.025 4.025 6 C 0.285 3.715 7 O -0.435 6.435 8 N -0.323 5.323 9 C -0.052 4.052 10 C -0.027 4.027 11 O -0.288 6.288 12 C 0.028 3.972 13 H 0.144 0.856 14 C 0.033 3.967 15 N -0.345 5.345 16 C -0.375 4.375 17 H 0.087 0.913 18 C -0.252 4.252 19 N -0.593 5.593 20 Si 0.805 3.195 21 H -0.211 1.211 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.019 4.019 25 C 0.019 3.981 26 H 0.109 0.891 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.139 0.861 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.046 0.954 37 H 0.168 0.832 38 H 0.049 0.951 39 H 0.028 0.972 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -20.135 7.356 -3.275 21.685 hybrid contribution 1.166 -1.070 -0.702 1.731 sum -18.968 6.286 -3.977 20.375 Atomic orbital electron populations 1.24050 0.94740 1.03630 0.97532 1.22786 0.96500 0.98003 1.02609 1.21815 0.88248 0.96796 0.92313 1.88016 1.45561 1.36482 1.61720 1.22375 0.92340 0.89676 0.98153 1.21124 0.83260 0.82848 0.84236 1.90611 1.72438 1.28426 1.52064 1.46697 1.31193 1.16936 1.37496 1.22065 1.00036 0.85885 0.97209 1.22572 0.91589 1.03334 0.85220 1.86885 1.77444 1.28057 1.36442 1.22652 0.92390 0.83815 0.98337 0.85560 1.21504 0.95133 0.83368 0.96660 1.44484 1.25694 1.04629 1.59663 1.19316 0.99700 0.91389 1.27121 0.91319 1.25600 0.97563 0.99377 1.02614 1.70156 1.18062 1.22653 1.48450 0.85090 0.78201 0.78004 0.78192 1.21070 1.21242 1.19989 1.22149 0.87754 0.96643 0.95384 1.21411 0.89626 0.95723 0.91351 0.89110 0.86810 0.86536 0.88218 0.90090 0.90914 0.86067 0.88107 0.87433 0.87266 0.95389 0.83242 0.95100 0.97196 0.94133 0.91303 0.96639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 14.31 67.79 0.97 -1.26 16 2 C -0.18 -3.44 9.89 25.66 0.25 -3.18 16 3 C 0.08 1.51 6.35 71.24 0.45 1.97 16 4 O -0.40 -10.99 9.86 -129.94 -1.28 -12.27 16 5 C 0.05 1.19 4.97 71.24 0.35 1.54 16 6 C 0.50 16.54 7.22 87.66 0.63 17.17 16 7 O -0.56 -24.32 13.39 16.02 0.21 -24.11 16 8 N -0.59 -18.42 3.09 -806.46 -2.49 -20.91 16 9 C 0.07 1.46 5.87 86.32 0.51 1.96 16 10 C 0.05 1.26 6.72 71.64 0.48 1.74 16 11 O -0.37 -12.23 10.25 -146.21 -1.50 -13.73 16 12 C 0.09 3.35 3.82 30.81 0.12 3.47 16 13 H 0.13 4.44 8.14 -2.38 -0.02 4.42 16 14 C 0.16 8.07 5.08 86.64 0.44 8.51 16 15 N -0.62 -34.09 3.39 -696.33 -2.36 -36.44 16 16 C -0.25 -14.84 10.24 84.03 0.86 -13.98 16 17 H 0.07 4.13 7.84 -2.91 -0.02 4.11 16 18 C -0.06 -3.43 5.45 84.86 0.46 -2.97 16 19 N -0.94 -57.81 10.43 21.65 0.23 -57.59 16 20 Si 0.98 47.53 29.56 68.60 2.03 49.56 16 21 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 23 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 24 C 0.11 5.08 6.29 86.70 0.55 5.63 16 25 C 0.12 4.65 3.41 45.65 0.16 4.81 16 26 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.11 1.30 8.06 -2.91 -0.02 1.27 16 28 H 0.12 1.13 7.90 -2.91 -0.02 1.11 16 29 H 0.10 2.20 8.06 -2.91 -0.02 2.17 16 30 H 0.08 1.01 7.86 -2.39 -0.02 0.99 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 32 H 0.12 1.63 8.07 -2.39 -0.02 1.61 16 33 H 0.10 1.79 7.15 -2.39 -0.02 1.78 16 34 H 0.11 1.68 6.31 -2.38 -0.02 1.67 16 35 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.03 0.90 6.84 -2.39 -0.02 0.88 16 37 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.03 1.78 6.97 -2.39 -0.02 1.76 16 39 H 0.01 0.55 6.30 -2.39 -0.02 0.54 16 40 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.07 3.61 4.81 -9.68 -0.05 3.56 16 42 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -81.60 334.22 2.05 -79.55 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.98 Total: 10.54 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 6.23 Total: 25.41 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -4.62 Total: -114.94 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -2.56 Total: -50.11 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -81.60 2.05 -79.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217550118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.866 kcal (2) G-P(sol) polarization free energy of solvation -81.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds