Wall clock time and date at job start Tue Mar 31 2020 03:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00265 * 2 1 4 4 C 1.52993 * 109.47489 * 124.99226 * 3 2 1 5 5 N 1.46498 * 109.47088 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00613 * 270.00151 * 5 4 3 7 7 C 1.34780 * 119.99498 * 90.00661 * 5 4 3 8 8 O 1.21348 * 120.00324 * 3.65079 * 7 5 4 9 9 C 1.49453 * 119.99971 * 183.37838 * 7 5 4 10 10 O 1.21353 * 120.00031 * 354.43011 * 9 7 5 11 11 N 1.34769 * 120.00333 * 174.43278 * 9 7 5 12 12 C 1.47023 * 125.64567 * 359.68772 * 11 9 7 13 13 C 1.54341 * 107.26483 * 178.85388 * 12 11 9 14 14 C 1.55157 * 103.02105 * 338.14027 * 13 12 11 15 15 O 1.42900 * 111.00661 * 277.23601 * 14 13 12 16 16 C 1.50700 * 111.03855 * 153.39634 * 14 13 12 17 17 H 1.08003 * 119.99448 * 6.33277 * 16 14 13 18 18 C 1.37875 * 120.00224 * 186.33517 * 16 14 13 19 19 N 1.31517 * 119.99661 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00081 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46992 * 89.99748 * 20 18 16 22 22 H 1.48499 * 109.47093 * 209.99481 * 20 18 16 23 23 H 1.48503 * 109.47192 * 330.00089 * 20 18 16 24 24 C 1.47429 * 125.65363 * 180.02562 * 11 9 7 25 25 H 1.07996 * 119.99680 * 180.02562 * 1 2 3 26 26 H 1.07995 * 119.99603 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99855 * 179.97438 * 2 1 3 28 28 H 1.09010 * 109.46869 * 4.99321 * 3 2 1 29 29 H 1.09000 * 109.47182 * 244.99994 * 3 2 1 30 30 H 1.09001 * 109.47160 * 60.00419 * 4 3 2 31 31 H 1.09000 * 109.47535 * 300.00551 * 4 3 2 32 32 H 1.08999 * 109.47408 * 264.00864 * 6 5 4 33 33 H 1.08997 * 109.46454 * 24.00825 * 6 5 4 34 34 H 1.08999 * 109.46978 * 144.00624 * 6 5 4 35 35 H 1.08999 * 109.88644 * 298.39935 * 12 11 9 36 36 H 1.09000 * 109.88591 * 59.56832 * 12 11 9 37 37 H 1.09002 * 110.84587 * 219.67775 * 13 12 11 38 38 H 1.08995 * 110.51924 * 96.45477 * 13 12 11 39 39 H 0.96697 * 113.99964 * 173.65059 * 15 14 13 40 40 H 0.96999 * 119.99585 * 179.97438 * 19 18 16 41 41 H 1.09002 * 110.35808 * 322.92473 * 24 11 9 42 42 H 1.08997 * 110.37025 * 85.13602 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0350 1.3331 1.1817 5 7 3.7679 2.6016 1.1812 6 6 5.0343 2.7157 0.4536 7 6 3.2771 3.6636 1.8504 8 8 2.2631 3.5511 2.5074 9 6 3.9851 4.9783 1.7882 10 8 5.0537 5.0657 1.2198 11 7 3.4368 6.0669 2.3633 12 6 2.1510 6.1039 3.0752 13 6 1.9507 7.5471 3.5844 14 6 3.3956 8.1116 3.6122 15 8 4.0715 7.7304 4.8122 16 6 3.3943 9.6098 3.4491 17 1 2.4596 10.1507 3.4364 18 6 4.5863 10.2898 3.3160 19 7 5.7245 9.6310 3.3319 20 14 4.5846 12.1467 3.1130 21 1 4.6526 12.7908 4.4494 22 1 5.7610 12.5574 2.3052 23 1 3.3388 12.5682 2.4233 24 6 4.0237 7.4193 2.3768 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6214 1.4025 -0.9314 30 1 3.7400 0.5066 1.0922 31 1 2.4772 1.2357 2.1130 32 1 5.8644 2.5535 1.1412 33 1 5.0669 1.9675 -0.3383 34 1 5.1138 3.7111 0.0165 35 1 1.3430 5.8330 2.3956 36 1 2.1746 5.4149 3.9195 37 1 1.5166 7.5489 4.5842 38 1 1.3285 8.1137 2.8917 39 1 5.0063 7.9767 4.8323 40 1 6.5630 10.1094 3.2379 41 1 5.1068 7.3616 2.4841 42 1 3.7616 7.9557 1.4649 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261486511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:25 Heat of formation + Delta-G solvation = -82.239876 kcal Electronic energy + Delta-G solvation = -24651.524294 eV Core-core repulsion = 21018.920182 eV Total energy + Delta-G solvation = -3632.604112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.51971 -38.61116 -37.26401 -36.42844 -34.72452 -34.02075 -32.25799 -30.23150 -29.82997 -27.89857 -26.83676 -25.81807 -24.45272 -22.82814 -21.13322 -20.06016 -19.67988 -18.85435 -17.24300 -16.81991 -16.73401 -16.05989 -15.48667 -15.44281 -15.11318 -14.71327 -14.49085 -14.21670 -13.67561 -13.18383 -13.08511 -12.95816 -12.94174 -12.78742 -12.33947 -12.31428 -12.24013 -11.66787 -11.51332 -11.31620 -11.20687 -11.05701 -10.89489 -10.72388 -10.52302 -10.47332 -10.21681 -9.69014 -9.37728 -8.96555 -8.76456 -8.66727 -8.38041 -7.89177 -6.30703 -4.40187 1.79449 2.03322 2.61020 3.19741 3.27365 3.29837 3.57770 3.76656 4.24684 4.54912 4.68447 4.83884 4.96856 4.98784 5.08412 5.23907 5.31808 5.48694 5.62893 5.67771 5.69739 5.79301 5.82450 5.86926 6.04351 6.07935 6.30063 6.37739 6.42463 6.51311 6.53045 6.72497 6.82205 6.84988 7.12538 7.18089 7.30136 7.71279 7.81471 8.00002 8.06805 8.46021 8.64068 9.27413 9.36009 10.76497 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.029713 B = 0.003500 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.124348 B = 7999.136489 C = 8416.611530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.153 4.153 3 C -0.111 4.111 4 C 0.118 3.882 5 N -0.595 5.595 6 C 0.066 3.934 7 C 0.508 3.492 8 O -0.517 6.517 9 C 0.508 3.492 10 O -0.532 6.532 11 N -0.574 5.574 12 C 0.111 3.889 13 C -0.121 4.121 14 C 0.249 3.751 15 O -0.581 6.581 16 C -0.536 4.536 17 H 0.068 0.932 18 C 0.071 3.929 19 N -0.894 5.894 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.092 3.908 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.381 0.619 40 H 0.270 0.730 41 H 0.091 0.909 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.762 -15.105 -6.404 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.171 4.171 3 C -0.149 4.149 4 C -0.005 4.005 5 N -0.329 5.329 6 C -0.076 4.076 7 C 0.291 3.709 8 O -0.392 6.392 9 C 0.290 3.710 10 O -0.412 6.412 11 N -0.305 5.305 12 C -0.012 4.012 13 C -0.159 4.159 14 C 0.208 3.792 15 O -0.389 6.389 16 C -0.575 4.575 17 H 0.086 0.914 18 C -0.133 4.133 19 N -0.532 5.532 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.028 4.028 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.230 0.770 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.104 -15.370 -6.233 17.353 hybrid contribution 0.710 1.045 -0.385 1.320 sum -4.394 -14.325 -6.618 16.380 Atomic orbital electron populations 1.23901 0.96010 1.01951 1.00679 1.22808 0.96034 0.97956 1.00344 1.21134 0.98704 0.96100 0.98943 1.21497 0.94711 0.84622 0.99638 1.47718 1.23849 1.10750 1.50612 1.22396 0.83637 1.05382 0.96147 1.20446 0.84981 0.85536 0.79913 1.90716 1.24493 1.84270 1.39758 1.19563 0.85866 0.84354 0.81175 1.90618 1.21875 1.84849 1.43889 1.48686 1.21994 1.09540 1.50303 1.22151 0.84182 0.98732 0.96126 1.22712 0.98751 0.93246 1.01216 1.19640 0.86674 0.91917 0.80975 1.86135 1.28382 1.83646 1.40755 1.21463 0.93438 0.91143 1.51421 0.91393 1.25089 0.95374 0.99399 0.93407 1.69712 0.97788 1.36347 1.49367 0.86386 0.77798 0.84331 0.78294 1.20372 1.21023 1.19679 1.23488 1.00606 0.77538 1.01213 0.88463 0.88465 0.87254 0.90960 0.90733 0.90122 0.89432 0.92320 0.92022 0.87228 0.92008 0.90963 0.90505 0.90405 0.76958 0.91974 0.89077 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 14.32 29.01 0.42 -1.17 16 2 C -0.15 -1.29 9.52 -36.03 -0.34 -1.64 16 3 C -0.11 -1.10 5.98 -27.89 -0.17 -1.26 16 4 C 0.12 1.28 5.39 -4.05 -0.02 1.26 16 5 N -0.60 -8.23 2.87 -182.09 -0.52 -8.76 16 6 C 0.07 0.81 9.55 59.85 0.57 1.38 16 7 C 0.51 8.87 7.69 -11.58 -0.09 8.78 16 8 O -0.52 -9.65 13.72 5.50 0.08 -9.58 16 9 C 0.51 10.20 7.80 -11.59 -0.09 10.11 16 10 O -0.53 -11.22 13.39 5.49 0.07 -11.14 16 11 N -0.57 -12.17 3.33 -171.00 -0.57 -12.74 16 12 C 0.11 2.16 5.50 -3.05 -0.02 2.14 16 13 C -0.12 -2.48 6.13 -24.89 -0.15 -2.63 16 14 C 0.25 5.99 0.87 -89.61 -0.08 5.91 16 15 O -0.58 -14.78 13.16 -35.23 -0.46 -15.25 16 16 C -0.54 -13.78 8.27 -34.44 -0.28 -14.06 16 17 H 0.07 1.71 7.79 -52.48 -0.41 1.30 16 18 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 19 N -0.89 -23.37 10.69 55.43 0.59 -22.78 16 20 Si 0.90 20.08 29.54 -169.99 -5.02 15.05 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 C 0.09 2.18 5.38 -2.52 -0.01 2.16 16 25 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 26 H 0.10 0.86 7.84 -52.49 -0.41 0.45 16 27 H 0.11 0.75 8.06 -52.49 -0.42 0.32 16 28 H 0.07 0.86 7.79 -51.92 -0.40 0.45 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 31 H 0.09 1.07 7.38 -51.93 -0.38 0.68 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.55 8.03 -51.93 -0.42 0.14 16 34 H 0.11 1.60 5.36 -51.93 -0.28 1.32 16 35 H 0.06 1.11 7.84 -51.93 -0.41 0.70 16 36 H 0.07 1.44 7.44 -51.93 -0.39 1.05 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.08 1.48 8.03 -51.93 -0.42 1.07 16 39 H 0.38 9.84 7.56 45.56 0.34 10.19 16 40 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 41 H 0.09 2.37 7.33 -51.93 -0.38 1.99 16 42 H 0.07 1.62 8.03 -51.93 -0.42 1.20 16 LS Contribution 347.06 15.07 5.23 5.23 Total: -1.00 -28.44 347.06 -6.60 -35.05 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -5.63 Total: 12.21 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: -0.36 Total: 12.70 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.50 Total: -44.27 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.31 Total: -35.97 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.44 -6.60 -35.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261486511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.192 kcal (2) G-P(sol) polarization free energy of solvation -28.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds