Wall clock time and date at job start Tue Mar 31 2020 03:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00265 * 2 1 4 4 C 1.52993 * 109.47489 * 124.99226 * 3 2 1 5 5 N 1.46498 * 109.47088 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00613 * 270.00151 * 5 4 3 7 7 C 1.34780 * 119.99498 * 90.00661 * 5 4 3 8 8 O 1.21348 * 120.00324 * 3.65079 * 7 5 4 9 9 C 1.49453 * 119.99971 * 183.37838 * 7 5 4 10 10 O 1.21353 * 120.00031 * 354.43011 * 9 7 5 11 11 N 1.34769 * 120.00333 * 174.43278 * 9 7 5 12 12 C 1.47023 * 125.64567 * 359.68772 * 11 9 7 13 13 C 1.54341 * 107.26483 * 178.85388 * 12 11 9 14 14 C 1.55157 * 103.02105 * 338.14027 * 13 12 11 15 15 O 1.42900 * 111.00661 * 277.23601 * 14 13 12 16 16 C 1.50700 * 111.03855 * 153.39634 * 14 13 12 17 17 H 1.08003 * 119.99448 * 6.33277 * 16 14 13 18 18 C 1.37875 * 120.00224 * 186.33517 * 16 14 13 19 19 N 1.31517 * 119.99661 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00081 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46992 * 89.99748 * 20 18 16 22 22 H 1.48499 * 109.47093 * 209.99481 * 20 18 16 23 23 H 1.48503 * 109.47192 * 330.00089 * 20 18 16 24 24 C 1.47429 * 125.65363 * 180.02562 * 11 9 7 25 25 H 1.07996 * 119.99680 * 180.02562 * 1 2 3 26 26 H 1.07995 * 119.99603 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99855 * 179.97438 * 2 1 3 28 28 H 1.09010 * 109.46869 * 4.99321 * 3 2 1 29 29 H 1.09000 * 109.47182 * 244.99994 * 3 2 1 30 30 H 1.09001 * 109.47160 * 60.00419 * 4 3 2 31 31 H 1.09000 * 109.47535 * 300.00551 * 4 3 2 32 32 H 1.08999 * 109.47408 * 264.00864 * 6 5 4 33 33 H 1.08997 * 109.46454 * 24.00825 * 6 5 4 34 34 H 1.08999 * 109.46978 * 144.00624 * 6 5 4 35 35 H 1.08999 * 109.88644 * 298.39935 * 12 11 9 36 36 H 1.09000 * 109.88591 * 59.56832 * 12 11 9 37 37 H 1.09002 * 110.84587 * 219.67775 * 13 12 11 38 38 H 1.08995 * 110.51924 * 96.45477 * 13 12 11 39 39 H 0.96697 * 113.99964 * 173.65059 * 15 14 13 40 40 H 0.96999 * 119.99585 * 179.97438 * 19 18 16 41 41 H 1.09002 * 110.35808 * 322.92473 * 24 11 9 42 42 H 1.08997 * 110.37025 * 85.13602 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0350 1.3331 1.1817 5 7 3.7679 2.6016 1.1812 6 6 5.0343 2.7157 0.4536 7 6 3.2771 3.6636 1.8504 8 8 2.2631 3.5511 2.5074 9 6 3.9851 4.9783 1.7882 10 8 5.0537 5.0657 1.2198 11 7 3.4368 6.0669 2.3633 12 6 2.1510 6.1039 3.0752 13 6 1.9507 7.5471 3.5844 14 6 3.3956 8.1116 3.6122 15 8 4.0715 7.7304 4.8122 16 6 3.3943 9.6098 3.4491 17 1 2.4596 10.1507 3.4364 18 6 4.5863 10.2898 3.3160 19 7 5.7245 9.6310 3.3319 20 14 4.5846 12.1467 3.1130 21 1 4.6526 12.7908 4.4494 22 1 5.7610 12.5574 2.3052 23 1 3.3388 12.5682 2.4233 24 6 4.0237 7.4193 2.3768 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6214 1.4025 -0.9314 30 1 3.7400 0.5066 1.0922 31 1 2.4772 1.2357 2.1130 32 1 5.8644 2.5535 1.1412 33 1 5.0669 1.9675 -0.3383 34 1 5.1138 3.7111 0.0165 35 1 1.3430 5.8330 2.3956 36 1 2.1746 5.4149 3.9195 37 1 1.5166 7.5489 4.5842 38 1 1.3285 8.1137 2.8917 39 1 5.0063 7.9767 4.8323 40 1 6.5630 10.1094 3.2379 41 1 5.1068 7.3616 2.4841 42 1 3.7616 7.9557 1.4649 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261486511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:24 Heat of formation + Delta-G solvation = -101.575678 kcal Electronic energy + Delta-G solvation = -24652.362758 eV Core-core repulsion = 21018.920182 eV Total energy + Delta-G solvation = -3633.442575 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.96253 -40.15219 -38.92771 -37.55651 -36.13298 -35.29149 -34.24582 -31.95909 -30.69976 -29.68171 -28.11765 -27.36475 -25.81144 -24.29517 -22.48628 -21.51227 -20.72384 -20.26950 -19.14106 -18.32253 -18.06375 -17.43713 -17.10832 -16.86419 -16.40606 -16.21069 -15.93603 -15.54185 -14.90427 -14.76144 -14.68906 -14.47852 -14.10202 -13.95334 -13.72939 -13.53200 -13.50603 -13.28799 -13.18219 -12.83854 -12.61131 -12.41281 -12.27576 -12.14759 -12.12194 -11.98215 -11.93176 -11.21163 -10.70321 -10.48973 -10.41411 -10.20959 -9.86489 -9.55802 -8.25347 -6.42200 0.33217 1.20365 1.42687 1.45079 1.46611 1.55421 2.08566 2.34846 2.43188 3.00520 3.13809 3.76158 3.90256 4.04175 4.06304 4.14288 4.16596 4.30468 4.32746 4.43706 4.53127 4.65624 4.68326 4.72347 4.81354 4.93809 5.00005 5.03997 5.05197 5.08238 5.20885 5.31900 5.40600 5.42821 5.73906 5.74082 5.86080 5.94150 6.04802 6.31054 6.57565 6.67138 6.91472 7.26396 7.34587 8.80354 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.029713 B = 0.003500 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.124348 B = 7999.136489 C = 8416.611530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C -0.105 4.105 4 C 0.116 3.884 5 N -0.583 5.583 6 C 0.065 3.935 7 C 0.509 3.491 8 O -0.534 6.534 9 C 0.500 3.500 10 O -0.547 6.547 11 N -0.584 5.584 12 C 0.120 3.880 13 C -0.115 4.115 14 C 0.233 3.767 15 O -0.588 6.588 16 C -0.555 4.555 17 H 0.069 0.931 18 C 0.028 3.972 19 N -0.914 5.914 20 Si 0.965 3.035 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.266 1.266 24 C 0.108 3.892 25 H 0.114 0.886 26 H 0.085 0.915 27 H 0.133 0.867 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.374 0.626 40 H 0.270 0.730 41 H 0.059 0.941 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.406 -16.622 -7.252 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.172 4.172 3 C -0.144 4.144 4 C -0.005 4.005 5 N -0.315 5.315 6 C -0.076 4.076 7 C 0.291 3.709 8 O -0.411 6.411 9 C 0.284 3.716 10 O -0.428 6.428 11 N -0.316 5.316 12 C -0.002 4.002 13 C -0.153 4.153 14 C 0.193 3.807 15 O -0.396 6.396 16 C -0.593 4.593 17 H 0.088 0.912 18 C -0.173 4.173 19 N -0.553 5.553 20 Si 0.791 3.209 21 H -0.202 1.202 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.014 4.014 25 H 0.132 0.868 26 H 0.104 0.896 27 H 0.151 0.849 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.135 0.865 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.223 0.777 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.756 -16.932 -7.100 19.241 hybrid contribution 0.955 1.437 -0.168 1.734 sum -4.801 -15.494 -7.268 17.775 Atomic orbital electron populations 1.24045 0.96324 1.02308 1.00617 1.22897 0.96022 0.97992 1.00309 1.21065 0.98165 0.96216 0.98923 1.21769 0.95450 0.83796 0.99523 1.47848 1.24087 1.10636 1.48948 1.22433 0.82793 1.05354 0.97012 1.19935 0.84818 0.85308 0.80867 1.90705 1.25106 1.84362 1.40970 1.20227 0.85826 0.85225 0.80342 1.90621 1.22565 1.85429 1.44155 1.48727 1.22632 1.09093 1.51151 1.22130 0.83941 0.97937 0.96224 1.22720 0.96630 0.93712 1.02214 1.19867 0.88570 0.91769 0.80521 1.86128 1.27996 1.83730 1.41706 1.21745 0.93679 0.92185 1.51732 0.91247 1.25810 0.95081 1.03318 0.93096 1.69821 0.98131 1.37649 1.49683 0.85438 0.77836 0.79542 0.78112 1.20218 1.20978 1.18990 1.23038 0.98663 0.79093 1.00603 0.86776 0.89620 0.84897 0.93462 0.89598 0.86467 0.90701 0.92212 0.87773 0.89758 0.90099 0.91373 0.89718 0.88948 0.77708 0.92027 0.92219 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.93 14.32 67.78 0.97 -1.96 16 2 C -0.15 -2.18 9.52 25.64 0.24 -1.94 16 3 C -0.11 -1.85 5.98 29.84 0.18 -1.67 16 4 C 0.12 2.20 5.39 86.38 0.47 2.67 16 5 N -0.58 -15.11 2.87 -848.36 -2.44 -17.54 16 6 C 0.07 1.47 9.55 127.77 1.22 2.69 16 7 C 0.51 17.47 7.69 87.27 0.67 18.14 16 8 O -0.53 -19.64 13.72 -3.24 -0.04 -19.68 16 9 C 0.50 20.29 7.80 87.27 0.68 20.97 16 10 O -0.55 -23.50 13.39 -3.26 -0.04 -23.54 16 11 N -0.58 -25.12 3.33 -813.29 -2.70 -27.82 16 12 C 0.12 4.62 5.50 86.73 0.48 5.10 16 13 C -0.12 -4.64 6.13 31.79 0.19 -4.45 16 14 C 0.23 11.38 0.87 -10.14 -0.01 11.38 16 15 O -0.59 -30.58 13.16 -148.98 -1.96 -32.54 16 16 C -0.56 -28.69 8.27 25.60 0.21 -28.48 16 17 H 0.07 3.48 7.79 -2.91 -0.02 3.46 16 18 C 0.03 1.45 5.29 84.65 0.45 1.90 16 19 N -0.91 -48.79 10.69 21.45 0.23 -48.56 16 20 Si 0.97 41.19 29.54 68.60 2.03 43.22 16 21 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 C 0.11 5.25 5.38 86.86 0.47 5.71 16 25 H 0.11 1.30 8.06 -2.91 -0.02 1.27 16 26 H 0.09 1.46 7.84 -2.91 -0.02 1.43 16 27 H 0.13 1.28 8.06 -2.91 -0.02 1.26 16 28 H 0.05 1.07 7.79 -2.38 -0.02 1.05 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.12 1.44 8.07 -2.39 -0.02 1.42 16 31 H 0.07 1.68 7.38 -2.39 -0.02 1.66 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 1.47 8.03 -2.39 -0.02 1.45 16 34 H 0.08 2.40 5.36 -2.46 -0.01 2.39 16 35 H 0.08 2.81 7.84 -2.39 -0.02 2.79 16 36 H 0.07 2.69 7.44 -2.39 -0.02 2.67 16 37 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.09 3.43 8.03 -2.39 -0.02 3.41 16 39 H 0.37 20.06 7.56 -74.06 -0.56 19.50 16 40 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 41 H 0.06 3.25 7.33 -2.39 -0.02 3.23 16 42 H 0.06 2.79 8.03 -2.39 -0.02 2.77 16 Total: -1.00 -61.99 347.06 1.74 -60.25 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: 0.46 Total: 36.16 kcal Atomic # 6 Polarization: 23.84 SS G_CDS: 6.22 Total: 30.06 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -4.91 Total: -93.92 kcal Atomic # 8 Polarization: -73.71 SS G_CDS: -2.05 Total: -75.76 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -61.99 1.74 -60.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261486511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.326 kcal (2) G-P(sol) polarization free energy of solvation -61.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds