Wall clock time and date at job start Tue Mar 31 2020 03:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46249 * 118.79782 * 2 1 4 4 C 1.52176 * 109.96385 * 162.77142 * 3 2 1 5 5 C 1.54472 * 110.33137 * 284.80936 * 4 3 2 6 6 C 1.55293 * 101.41346 * 206.28819 * 5 4 3 7 7 N 1.47486 * 104.77369 * 36.65830 * 6 5 4 8 8 C 1.34776 * 125.65900 * 155.89609 * 7 6 5 9 9 O 1.21282 * 119.99940 * 179.69167 * 8 7 6 10 10 C 1.50698 * 120.00035 * 359.70052 * 8 7 6 11 11 C 1.53006 * 109.47184 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47418 * 89.99710 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99770 * 16 14 12 19 19 H 1.48508 * 109.47394 * 329.99535 * 16 14 12 20 20 C 1.47196 * 108.67580 * 335.63467 * 7 6 5 21 21 O 1.42285 * 110.64219 * 47.15600 * 4 3 2 22 22 C 1.43071 * 113.25063 * 293.85610 * 21 4 3 23 23 C 1.33839 * 118.79700 * 179.97438 * 2 1 3 24 24 O 1.21273 * 118.65217 * 2.58861 * 23 2 1 25 25 H 1.08995 * 109.46764 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47130 * 300.02261 * 1 2 3 27 27 H 1.09005 * 109.46754 * 60.01757 * 1 2 3 28 28 H 1.09000 * 109.39545 * 42.61581 * 3 2 1 29 29 H 1.08991 * 109.37674 * 282.91715 * 3 2 1 30 30 H 1.09000 * 111.01330 * 324.53731 * 5 4 3 31 31 H 1.08993 * 111.01474 * 88.38449 * 5 4 3 32 32 H 1.09003 * 110.49710 * 277.80428 * 6 5 4 33 33 H 1.08995 * 110.32464 * 155.42931 * 6 5 4 34 34 H 1.09001 * 109.47612 * 59.99945 * 10 8 7 35 35 H 1.09001 * 109.47122 * 299.99777 * 10 8 7 36 36 H 1.09001 * 109.47002 * 299.99404 * 11 10 8 37 37 H 1.08993 * 109.46955 * 59.99842 * 11 10 8 38 38 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 39 39 H 1.09011 * 109.90637 * 121.14679 * 20 7 6 40 40 H 1.08998 * 109.90878 * 242.41144 * 20 7 6 41 41 H 1.08998 * 109.39316 * 168.45324 * 22 21 4 42 42 H 1.09004 * 109.39473 * 288.17439 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1695 1.2816 0.0000 4 6 3.6170 1.0788 0.4236 5 6 3.7022 0.8440 1.9480 6 6 5.1398 1.3440 2.2561 7 7 5.3352 2.5009 1.3624 8 6 6.1991 3.5149 1.5673 9 8 6.2800 4.4153 0.7588 10 6 7.0647 3.5297 2.8008 11 6 7.9474 4.7794 2.7894 12 6 8.8135 4.7939 4.0226 13 1 8.7412 3.9922 4.7427 14 6 9.6974 5.8311 4.2321 15 7 9.7850 6.8076 3.3556 16 14 10.7704 5.8495 5.7611 17 1 12.0478 5.1471 5.4779 18 1 11.0536 7.2543 6.1502 19 1 10.0627 5.1616 6.8708 20 6 4.4345 2.3611 0.2066 21 8 4.1963 -0.0153 -0.2776 22 6 3.6080 -1.2758 0.0571 23 6 2.1097 -1.1729 0.0005 24 8 1.4582 -2.1946 -0.0471 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5142 0.8898 27 1 -0.3633 0.5136 -0.8902 28 1 1.6808 1.9633 0.6961 29 1 2.1423 1.7092 -1.0022 30 1 2.9562 1.4369 2.4771 31 1 3.5985 -0.2144 2.1868 32 1 5.8703 0.5660 2.0342 33 1 5.2180 1.6527 3.2985 34 1 7.6948 2.6404 2.8133 35 1 6.4321 3.5394 3.6885 36 1 8.5800 4.7693 1.9018 37 1 7.3177 5.6689 2.7767 38 1 10.4066 7.5375 3.5031 39 1 3.7675 3.2214 0.1496 40 1 5.0177 2.2789 -0.7106 41 1 3.9460 -2.0324 -0.6510 42 1 3.9134 -1.5619 1.0636 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269990121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:18 Heat of formation + Delta-G solvation = -100.502626 kcal Electronic energy + Delta-G solvation = -24337.426639 eV Core-core repulsion = 20704.030595 eV Total energy + Delta-G solvation = -3633.396044 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.62848 -39.70975 -38.40940 -36.16991 -35.88493 -33.50130 -31.89994 -30.81217 -30.14252 -29.16468 -27.14921 -25.96770 -25.27937 -23.45393 -21.94621 -21.11473 -19.28310 -18.77774 -18.06891 -17.31473 -16.92901 -16.58194 -16.18861 -15.92647 -15.41751 -15.23711 -14.72296 -14.56604 -14.37239 -13.92876 -13.85858 -13.52056 -13.26460 -13.22581 -12.77214 -12.54246 -12.36219 -12.17458 -12.03768 -11.87368 -11.68742 -11.44546 -11.16191 -10.94403 -10.72009 -10.60992 -9.98163 -9.84121 -9.68707 -9.26739 -9.21817 -9.06430 -8.53817 -8.33423 -5.97699 -4.02271 2.04230 2.34151 2.93584 3.12568 3.22687 3.32283 3.38565 3.40870 3.76430 3.97943 4.10267 4.19328 4.45892 4.63341 4.69792 4.84237 4.85704 4.94265 5.00637 5.06444 5.14146 5.30475 5.33791 5.36123 5.37355 5.40630 5.48578 5.62761 5.75400 5.78659 6.16144 6.19108 6.37522 6.44695 6.83730 6.84886 7.56417 7.72334 7.72601 7.83595 8.05002 8.35825 8.66014 9.05961 9.61389 11.13282 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.038615 B = 0.002795 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.938234 B =10016.964712 C =10276.225816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.606 5.606 3 C 0.099 3.901 4 C 0.088 3.912 5 C -0.162 4.162 6 C 0.108 3.892 7 N -0.630 5.630 8 C 0.528 3.472 9 O -0.529 6.529 10 C -0.124 4.124 11 C 0.036 3.964 12 C -0.527 4.527 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.128 3.872 21 O -0.348 6.348 22 C 0.047 3.953 23 C 0.489 3.511 24 O -0.544 6.544 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.261 0.739 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.134 0.866 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.323 -15.466 -5.151 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.340 5.340 3 C -0.024 4.024 4 C 0.047 3.953 5 C -0.200 4.200 6 C -0.016 4.016 7 N -0.368 5.368 8 C 0.320 3.680 9 O -0.404 6.404 10 C -0.163 4.163 11 C -0.001 4.001 12 C -0.566 4.566 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C 0.004 3.996 21 O -0.266 6.266 22 C -0.032 4.032 23 C 0.277 3.723 24 O -0.423 6.423 25 H 0.110 0.890 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.152 0.848 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.288 -15.209 -5.775 24.477 hybrid contribution 0.341 0.005 0.972 1.030 sum -17.947 -15.203 -4.803 24.007 Atomic orbital electron populations 1.21794 0.78768 1.04717 1.01731 1.47373 1.07674 1.05899 1.73015 1.21951 0.91337 0.85506 1.03608 1.22196 0.91736 0.89003 0.92347 1.23485 0.98638 1.03055 0.94834 1.22292 0.95132 0.88631 0.95517 1.48758 1.41101 1.23871 1.23083 1.21371 0.78551 0.79227 0.88886 1.90690 1.66932 1.35729 1.47024 1.21866 0.97633 1.04125 0.92706 1.18920 0.93548 0.90301 0.97340 1.21202 1.21398 1.07433 1.06518 0.92604 1.25022 0.97194 0.95574 0.96576 1.69991 1.36804 1.10792 1.35220 0.86590 0.80845 0.77213 0.83285 1.20654 1.21221 1.19889 1.21530 0.92949 0.93385 0.91701 1.88139 1.59660 1.13773 1.65015 1.22875 0.87768 0.87941 1.04635 1.21013 0.91846 0.83361 0.76120 1.90733 1.67400 1.34000 1.50125 0.89013 0.91800 0.91855 0.88801 0.89933 0.88933 0.89388 0.90904 0.89621 0.90187 0.90243 0.95768 0.95786 0.92918 0.89686 0.89809 0.84812 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 10.59 59.85 0.63 1.10 16 2 N -0.61 -4.90 3.21 -182.73 -0.59 -5.48 16 3 C 0.10 0.68 5.27 -4.60 -0.02 0.66 16 4 C 0.09 0.75 0.82 -89.95 -0.07 0.68 16 5 C -0.16 -1.24 5.82 -24.74 -0.14 -1.38 16 6 C 0.11 1.09 6.70 -2.29 -0.02 1.08 16 7 N -0.63 -8.78 3.33 -170.53 -0.57 -9.35 16 8 C 0.53 10.05 7.85 -10.99 -0.09 9.96 16 9 O -0.53 -12.31 16.31 5.56 0.09 -12.22 16 10 C -0.12 -2.46 4.64 -27.88 -0.13 -2.59 16 11 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 12 C -0.53 -14.77 9.11 -34.44 -0.31 -15.09 16 13 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 16 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.13 1.46 6.24 -3.34 -0.02 1.44 16 21 O -0.35 -3.33 10.37 -35.23 -0.37 -3.69 16 22 C 0.05 0.37 6.35 35.81 0.23 0.60 16 23 C 0.49 4.80 7.40 -11.60 -0.09 4.71 16 24 O -0.54 -7.07 16.10 5.56 0.09 -6.98 16 25 H 0.09 0.74 6.70 -51.93 -0.35 0.39 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.49 7.85 -51.93 -0.41 0.08 16 29 H 0.08 0.53 8.13 -51.93 -0.42 0.10 16 30 H 0.09 0.63 7.83 -51.93 -0.41 0.22 16 31 H 0.09 0.58 5.83 -51.93 -0.30 0.27 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.82 7.48 -51.93 -0.39 0.43 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.43 7.86 -51.93 -0.41 1.02 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.09 0.90 7.81 -51.92 -0.41 0.49 16 40 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 41 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.10 0.61 6.53 -51.93 -0.34 0.27 16 LS Contribution 341.05 15.07 5.14 5.14 Total: -1.00 -36.28 341.05 -7.08 -43.36 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -6.34 Total: -4.31 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -0.25 Total: 3.59 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: -0.42 Total: -41.32 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.19 Total: -22.89 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.28 -7.08 -43.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.143 kcal (2) G-P(sol) polarization free energy of solvation -36.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds