Wall clock time and date at job start Tue Mar 31 2020 03:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 115.55292 * 2 1 4 4 C 1.53006 * 117.49597 * 214.33538 * 2 1 3 5 5 C 1.52997 * 117.50138 * 145.71434 * 2 1 3 6 6 H 1.09002 * 117.49884 * 214.98139 * 5 2 1 7 7 C 1.53006 * 117.49537 * 359.97438 * 5 2 1 8 8 N 1.46503 * 109.46921 * 185.01720 * 7 5 2 9 9 C 1.34775 * 119.99892 * 180.02562 * 8 7 5 10 10 O 1.21352 * 120.00116 * 0.02562 * 9 8 7 11 11 C 1.49454 * 119.99996 * 179.97438 * 9 8 7 12 12 O 1.21343 * 120.00052 * 0.02562 * 11 9 8 13 13 N 1.34775 * 119.99996 * 179.97438 * 11 9 8 14 14 C 1.47027 * 125.64696 * 0.02562 * 13 11 9 15 15 C 1.54330 * 107.27062 * 181.02254 * 14 13 11 16 16 C 1.55159 * 102.94054 * 22.19316 * 15 14 13 17 17 O 1.42904 * 110.99838 * 82.60974 * 16 15 14 18 18 C 1.50695 * 111.00491 * 206.42129 * 16 15 14 19 19 H 1.08000 * 119.99941 * 0.02562 * 18 16 15 20 20 C 1.37877 * 119.99989 * 180.02562 * 18 16 15 21 21 N 1.31516 * 120.00042 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99841 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47133 * 59.99971 * 22 20 18 24 24 H 1.48503 * 109.47108 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46973 * 299.99687 * 22 20 18 26 26 C 1.47425 * 125.65133 * 179.71864 * 13 11 9 27 27 H 1.09004 * 109.47489 * 154.27815 * 1 2 3 28 28 H 1.09006 * 109.47230 * 274.27603 * 1 2 3 29 29 H 1.09001 * 109.47457 * 34.27664 * 1 2 3 30 30 H 1.08990 * 117.50086 * 359.97438 * 4 2 1 31 31 H 1.09004 * 117.49623 * 145.02417 * 4 2 1 32 32 H 1.09002 * 109.47541 * 305.01612 * 7 5 2 33 33 H 1.08999 * 109.46972 * 65.01828 * 7 5 2 34 34 H 0.96996 * 120.00063 * 359.97438 * 8 7 5 35 35 H 1.08999 * 109.88622 * 300.43984 * 14 13 11 36 36 H 1.09003 * 109.88027 * 61.60666 * 14 13 11 37 37 H 1.08994 * 110.71868 * 140.55889 * 15 14 13 38 38 H 1.09001 * 110.71773 * 263.83130 * 15 14 13 39 39 H 0.96706 * 113.99689 * 180.02562 * 17 16 15 40 40 H 0.96999 * 119.99935 * 180.02562 * 21 20 18 41 41 H 1.08996 * 110.36394 * 274.74993 * 26 13 11 42 42 H 1.09006 * 110.36251 * 37.06981 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2363 -1.1207 -0.7655 5 6 2.2364 -1.1213 0.7645 6 1 3.1715 -0.8756 1.2679 7 6 1.3587 -2.1565 1.4710 8 7 2.2058 -3.0711 2.2406 9 6 1.6467 -4.0720 2.9491 10 8 0.4418 -4.2160 2.9491 11 6 2.5108 -5.0054 3.7338 12 8 3.7157 -4.8617 3.7334 13 7 1.9517 -6.0061 4.4427 14 6 0.5125 -6.2931 4.5314 15 6 0.3443 -7.5067 5.4699 16 6 1.6517 -7.4838 6.3052 17 8 1.5488 -6.5620 7.3923 18 6 1.9998 -8.8634 6.8017 19 1 1.3634 -9.7014 6.5582 20 6 3.1305 -9.0558 7.5667 21 7 3.9057 -8.0354 7.8627 22 14 3.5623 -10.7661 8.1816 23 1 3.7541 -11.6748 7.0229 24 1 4.8161 -10.7050 8.9750 25 1 2.4603 -11.2780 9.0351 26 6 2.6824 -6.9980 5.2525 27 1 -0.3634 -0.9258 -0.4460 28 1 -0.3634 0.0766 1.0249 29 1 -0.3634 0.8492 -0.5788 30 1 1.6111 -1.8582 -1.2687 31 1 3.1715 -0.8747 -1.2687 32 1 0.6676 -1.6485 2.1436 33 1 0.7945 -2.7214 0.7290 34 1 3.1690 -2.9567 2.2397 35 1 -0.0129 -5.4311 4.9424 36 1 0.1205 -6.5320 3.5427 37 1 -0.5264 -7.3791 6.1129 38 1 0.2694 -8.4304 4.8961 39 1 2.3424 -6.5128 7.9427 40 1 4.7014 -8.1709 8.4007 41 1 3.0112 -7.8289 4.6284 42 1 3.5356 -6.5313 5.7448 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326071570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:25 Heat of formation + Delta-G solvation = -95.196361 kcal Electronic energy + Delta-G solvation = -24128.169830 eV Core-core repulsion = 20495.003883 eV Total energy + Delta-G solvation = -3633.165947 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.35433 -38.87859 -38.02268 -37.15406 -34.73253 -33.93648 -32.17233 -30.22058 -29.07315 -28.03383 -27.55401 -25.58802 -23.53679 -21.99693 -21.60467 -20.42942 -19.68865 -19.10836 -17.33977 -17.10767 -16.81443 -16.10794 -15.81680 -15.14542 -14.98449 -14.61689 -14.53186 -14.17611 -13.86714 -13.47406 -13.27400 -13.04743 -12.94544 -12.75823 -12.45608 -12.27572 -11.87382 -11.64254 -11.53599 -11.52678 -11.12110 -11.05220 -10.77857 -10.55517 -10.51409 -10.38864 -10.27724 -10.20370 -9.41197 -9.17273 -9.13146 -8.69580 -8.42973 -7.88542 -6.31777 -4.41255 1.81395 2.62998 3.20906 3.26629 3.28554 3.37127 3.62423 3.92208 4.24480 4.25843 4.49318 4.50287 4.73695 4.91128 4.95899 4.98074 5.27095 5.42874 5.47965 5.49937 5.52221 5.54066 5.69441 5.80849 5.83383 5.87517 5.95900 6.05932 6.23258 6.36635 6.51241 6.73147 6.78793 6.84061 7.16546 7.26204 7.31170 7.71633 7.88107 7.97971 8.06033 8.45508 8.62348 9.28549 9.44365 10.75570 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.038600 B = 0.002988 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.205598 B = 9367.712153 C = 9711.528903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.143 4.143 3 H 0.107 0.893 4 C -0.173 4.173 5 C -0.169 4.169 6 H 0.113 0.887 7 C 0.152 3.848 8 N -0.706 5.706 9 C 0.510 3.490 10 O -0.518 6.518 11 C 0.508 3.492 12 O -0.539 6.539 13 N -0.573 5.573 14 C 0.112 3.888 15 C -0.122 4.122 16 C 0.250 3.750 17 O -0.582 6.582 18 C -0.537 4.537 19 H 0.068 0.932 20 C 0.070 3.930 21 N -0.896 5.896 22 Si 0.906 3.094 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.089 3.911 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.386 0.614 40 H 0.272 0.728 41 H 0.068 0.932 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 12.227 -13.602 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 H 0.125 0.875 4 C -0.209 4.209 5 C -0.188 4.188 6 H 0.131 0.869 7 C 0.029 3.971 8 N -0.360 5.360 9 C 0.291 3.709 10 O -0.393 6.393 11 C 0.290 3.710 12 O -0.418 6.418 13 N -0.305 5.305 14 C -0.011 4.011 15 C -0.160 4.160 16 C 0.209 3.791 17 O -0.392 6.392 18 C -0.575 4.575 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.535 5.535 22 Si 0.733 3.267 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.031 4.031 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.248 0.752 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.238 0.762 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.545 12.382 -13.785 19.079 hybrid contribution 1.459 -0.838 0.500 1.755 sum -3.086 11.544 -13.284 17.868 Atomic orbital electron populations 1.21402 0.92569 1.02242 1.02305 1.22375 0.95658 0.94338 1.03753 0.87505 1.23240 1.02750 1.01531 0.93422 1.22549 1.01634 1.00053 0.94517 0.86907 1.20912 0.92251 0.89437 0.94550 1.45732 1.11797 1.29957 1.48533 1.20412 0.88317 0.81910 0.80266 1.90726 1.14513 1.71842 1.62209 1.19565 0.87657 0.82130 0.81671 1.90717 1.14205 1.72633 1.64292 1.48631 1.09834 1.27553 1.44455 1.22147 0.80391 0.98936 0.99612 1.22727 1.00004 0.96228 0.97060 1.19630 0.88189 0.87995 0.83309 1.86090 1.44736 1.64610 1.43805 1.21469 1.09289 0.93363 1.33415 0.91360 1.25097 0.95361 0.97872 0.94947 1.69553 1.15247 1.30611 1.38119 0.86417 0.77799 0.83483 0.78954 1.19993 1.21066 1.19941 1.23563 0.98080 0.88884 0.92622 0.92220 0.91798 0.91989 0.88427 0.88556 0.90669 0.91010 0.75163 0.91147 0.91772 0.90483 0.90423 0.76200 0.91767 0.91400 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.86 9.19 37.15 0.34 -0.52 16 2 C -0.14 -1.00 6.41 -90.62 -0.58 -1.58 16 3 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 4 C -0.17 -1.24 9.82 -26.73 -0.26 -1.50 16 5 C -0.17 -1.39 5.85 -90.62 -0.53 -1.92 16 6 H 0.11 0.88 8.04 -51.93 -0.42 0.46 16 7 C 0.15 1.61 5.04 -4.04 -0.02 1.59 16 8 N -0.71 -9.39 5.55 -60.72 -0.34 -9.73 16 9 C 0.51 8.76 7.86 -11.58 -0.09 8.67 16 10 O -0.52 -9.54 14.12 5.49 0.08 -9.47 16 11 C 0.51 10.33 7.91 -11.58 -0.09 10.23 16 12 O -0.54 -11.87 16.73 5.50 0.09 -11.78 16 13 N -0.57 -12.27 3.32 -170.88 -0.57 -12.84 16 14 C 0.11 2.19 5.49 -3.06 -0.02 2.17 16 15 C -0.12 -2.51 6.12 -24.89 -0.15 -2.66 16 16 C 0.25 6.07 0.89 -89.51 -0.08 5.99 16 17 O -0.58 -15.05 13.19 -35.23 -0.46 -15.51 16 18 C -0.54 -13.82 8.25 -34.44 -0.28 -14.11 16 19 H 0.07 1.71 7.76 -52.49 -0.41 1.30 16 20 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 21 N -0.90 -23.57 10.72 55.43 0.59 -22.98 16 22 Si 0.91 20.10 29.54 -169.99 -5.02 15.08 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C 0.09 2.13 5.65 -2.41 -0.01 2.12 16 27 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 28 H 0.06 0.45 7.83 -51.93 -0.41 0.04 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.71 7.94 -51.93 -0.41 0.29 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.83 7.77 -51.93 -0.40 0.43 16 33 H 0.07 0.78 7.88 -51.93 -0.41 0.37 16 34 H 0.41 5.06 7.87 -40.82 -0.32 4.74 16 35 H 0.07 1.39 7.58 -51.93 -0.39 1.00 16 36 H 0.06 1.15 7.69 -51.93 -0.40 0.75 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.08 1.48 8.01 -51.93 -0.42 1.06 16 39 H 0.39 10.24 6.93 45.56 0.32 10.55 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 42 H 0.09 2.28 7.64 -51.93 -0.40 1.88 16 LS Contribution 348.03 15.07 5.24 5.24 Total: -1.00 -28.93 348.03 -7.98 -36.90 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -5.72 Total: 14.87 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -1.88 Total: 10.20 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.31 Total: -45.55 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.30 Total: -36.76 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.93 -7.98 -36.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326071570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.292 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds